Science topic

Acids - Science topic

Acids are chemical compounds which yield hydrogen ions or protons when dissolved in water, whose hydrogen can be replaced by metals or basic radicals, or which react with bases to form salts and water (neutralization). An extension of the term includes substances dissolved in media other than water. (Grant & Hackh's Chemical Dictionary, 5th ed)
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Hi all,
I'm working on some acid-mediated sol-gel syntheses to make metal oxides. I have a few formulations working using only acetic acid, and metal-alkoxide precursors. However for some formulations, I need a pH lower than acetic acid can achieve alone and I'm unsure what alternatives to look for
Using fluorinated analogs of acetic (trifluoroacetic) did successfully work to lower the pH of the sol-gel and form smaller clusters, but also formed metal-fluoride species in the final products
Using formic acid appeared to work, but caused precipitation later on (too polar).
So basically I'm looking for an organic or mostly-organic acid to mix into acetic acid, to lower the solution pH without forming metal salts as a byproduct. Any suggestions?
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Citric acid is a weak organic acid that can effectively alter the pH level of solutions without causing the precipitation issues associated with formic acid. It is commonly used in various applications, including dyeing and food preservation, and could serve as a suitable option to achieve the desired pH reduction in your formulations.
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Use of thioglycolic acid as a stabiliser during the synthesis of nanoparticles
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Zhao Zhang, To remove sulfur from the surface of nanoparticles, solvents such as ethanol, dimethyl sulfoxide (DMSO), and water can be used for washing, along with ultrasonication and centrifugation. However, it's important to note that thioglycolic acid used as a stabilizer during synthesis can introduce sulfur onto the nanoparticle surface.
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While the purpose of adding acid types into the PVA plasticizer when making gel electrolytes in supercapacitors is for conductivity, what are the other purposes? So why do we add acid? Why do we add specifically sulfuric and phosphoric acid? Or KOH is added, is there a review or article explaining their purpose? I would appreciate it if you could share what you know, if you have any. There are interpretations of the electrochemical results when different gels are used. But I would like an article or rewiev on why they are used. In other words, it's a bit like the history of gel electrolytes, etc...
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Kaushik Shandilya Thank you for your detailed answer.
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I am trying to detect organic acids on my waters LC, which is equipped with a W410 refractor index detector. I am using a Aminex HPX-87H Column which is supposed to work to separate organic acids. I’m not sure if I’m missing something in my method settings but I am not detecting anything at all. If anyone has any insight that would be greatly appreciated
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Both, HPX-87H column and RI detector should be suitable for separation and detection of organic acids. However, I don't know either, if something is missing in method as I don't know your method. If you could provide some more information like solvent composition, standard concentrations, maybe a chromatogram, that'd be helpful.
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I have synthesized GO using a modified Hummer's method as follows: 0.125 g of graphite fine powder and 0.125 g of sodium nitrate were mixed followed by the addition of 5.75 ml of concentrated sulphuric acid under constant stirring for 10 min (in an ice bath). After that, 0.775 g of potassium permanganate was added gradually to the mixture (in an ice bath) and stirred for 10 min - the mixture color turned to dark green. Then, the reaction mixture was transferred to a pre-heated oil bath and stirred at 35 °C for 1 h. The obtained mixture was diluted by the addition of 10 ml of DI water, then heated up to 90 °C for 30 min. Again 25 ml of DI water was added. Last, 1 ml H2O2 was added to terminate the reaction -the mixture turned to earthy yellow. I washed the product with distilled water and dried it at oven 60 °C for 24 h -the resulting product is a little bit sticky black solid.
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Why I got two peak for graphene oxide one at 11.2 degree and one at 12 degree
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I want to synthesis sodium polyacrylate 40% solution in water in order to use it as dispersing agent for CaCO3. i have acrylic acid, NaOH and potassium persulfate as initiator. any one can help me in the order of adding materials to the flask, reaction temperature, time and if it is possible to do this reaction at room temperature after initiators are turning into free radicals at 60°C?
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im looking for a chain transfer agent for that reaction in order to obtain a low viscose low molecular weight product. do you know any one?
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I would like to double hydrolysis of an agricultural residue using sulphuric acid. The problem lies in the preparation of solvent dilution. Thank you
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Mix 1 volume of 72% sulfuric acid with 23 volumes of water (resulting in a 24-fold dilution). This is a simplified version of the well-known formula V1N1=V2N2
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At our lab we are trying to develop new dyes for different applications, and we need information about the stomach acidity of Galleria mellonella model.
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My objective is to find the binding affinity of divalent metal ions with polyacrylic acid (PAA) by Isothermal Titration Calorimetry. In this experiment, I need to prepare 2mM of PAA. The 2mM should be in monomer concentration terms. So, How do I calculate how much mass of polyacrylic acid do I need to measure if the average molecular weight(Mw) of choosen polyacrylic acid is 12000. If someone knows, please tell me in detail with mass calculation strategies.
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The answer is perfect for beginners to learn about it Thank you so much for your nice reply.
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My objective is to find the binding affinity of divalent metal ions with polyacrylic acid (PAA) by Isothermal Titration Calorimetry. In this experiment, I need to prepare 2mM of PAA. The 2mM should be in monomer concentration terms. So, How do I calculate how much mass of polyacrylic acid do I need to measure if the average molecular weight(Mw) of choosen polyacrylic acid is 12000. If someone knows, please tell me in detail with mass calculation strategies.
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Dear Siyanand Kumar Chaudhary, find the average degree of polymerization by deviding 12000 by the mass of the repeating unit which is the same as that of the monomer. What you find is the number of COOH acid group per chain. If you know chain end groups, more accuracy will be brought to your calculation, since the MW weight you are using is not too high to neglect the mass of the chain end-groups. Once you determine the equivalent of COOH groups, then you can prepare any concentration. The one you are targetting is too low, you can reach it by dilution of a known small concentration. By the way, the binding energies or affinity of PAA to metal ions was studied extensively decades ago, good bibliographic research is to be done on PAA polyelectrolytes to avoid repeating what was already done. My Regards
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Hello,
I am performing esterification reactions between fatty acids and alcohols, in presence of methanesulfonic acid and H3PO2 as catalysts. At the end of the reaction, to reach the acid index I want, as well to neutralize the catalysts, I use NaOH, 30 % solution. At the end of the reaction, I perform filtration by using some powders. What I observed is that after a while the acid index increases, this being un inconvenient, because it should be in a certain range. I believe that this might be the effect of an reversible reaction, which means that the catalysts are still active.
What can I use at the end of the synthesis for the neutralization of the catalysts to be sure that the reversible reaction won't take place? or may be there are some composite able to adsorb them?
thank you in advance,
Elena
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What you should do is to follow the standard workup procedure for organic reactions. Once your esterification is complete, the reaction mixture is dissolved in an appropriate water-insoluble organic solvent (ether, ethyl acetate, dichloromethane, and alike). The organic phase is then placed in a separation funnel and is washed with conc. aq. sodium bicarbonate or, to improve phase separation, a mixture of than with saturated brine. Several washings may be required to reach slightly basic pH in aqueous phase. Once this takes place, the organic phase is washed with brine, dried over Na2SO4 or MgSO4, filtered, and evaporated. Alternatively, you can neutralize the reaction mixture by gradual addition of triethylamine to a slightly basic reaction on wet pH-paper, and then proceed to the aqueous workup as above. This is recommended in cases where the ester is prone to hydrolysis under aqueous acidic conditions.
Any textbook in preparative organic chemistry describes this work-up procedure and the glassware required in detail. Another suggestion I can make is to use only methanesulfonic acid (MSA) as a catalyst. In comparison with phosphoric acid, MSA is more readily removed by washing with bases because it does not form buffered aqueous solutions to the extent phosphoric acid does. Good luck with your synthesis
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Hello, I am currently conducting my Bachelor on a organic synthesis. Here, I first form an acid chloride by the addition of thionyl chloride and Dimethylformamide (which together form the Vilsmeier-Haack reagent) to my starting product (4-hydroxyphenylacetic acid) at room temperature. After, I add Triethylamine (a proton scavenger) and a dimethylamine HCl salt, the latter of which should react with the acid chloride in a amidation reaction. However, upon addition of the DMA.HCl nothing seems to occur and a IR-spec analysis of the final product shows a molecule reminiscent of polyethylene terephthalate (PET). This finding makes me think that there might be a polymerization reaction going on in which the acid chloride reacts with the hydroxy group of 4-hydroxyphenylacetic acid. This would also be able to explain as to why the DMA.HCl would not react in the mixture as all the acid chlorides would have polymerized before the amidation could occur.
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Dear Tom,
Maybe you should protect the hydroxyl group before amidation? Otherwise, the starting material 4-hydroxyphenylacetic acid will undergo esterification with itself.
Or you can use EDCI/DMAP/Et3N to amidate them instead?
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Hello everyone, recently I am trying to synthesize a dipeptide with a Coumarin derivative of Tryptophan, and the problem is it doesn't contribute in reaction at all.
Tryptophan itself in the same condition participated in reaction but the coumarin derivative does not contribute.
I have tried different agents such as TBTU and DIC/HOBt with PH=8
I tried activating the acid with N-hydroxysuccinimide but it didn't help.
What other parameters I can try or change?
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1) Check if you are using necessary protecting steps. When you say that trp "under the same conditions" gives a precipitate, be aware that any a-amino acid will give a diketopiperazine:
{2 RCH(NH2)CO2H -> R2C4H4N2O2
This would be expected to give a ppt with most amino acids trp so the result with trp by itself tells you nothing about the other reaction partners.
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2) There are many coumarin derivatives. Please specify how the coumarin is linked to trp: for example it can be an ester with a coumarin [3-, 4-,5-,6-,7-, or 8-] hydroxy derivative, or else an N-linked carboxy derivative of caboxy-substitued can link to the amino group through an amide link.
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Hello, everybody.
I am looking to add a DNAse treatment step to my bacterial lysis (gram-negative) procedure for crude enzyme extraction because my lysate always ends up being too viscous. We only have Zymo Research DNAse I in the lab and its information sheet says not to "avoid phosphate buffer and calcium chelators". However, I am using a chemical lysis procedure using Promega Cell Culture Lysis Reagent (following their bacterial lysis protocol) since we do not have a sonicator available. According to their information sheet, CCLR has 25mM Tris-phosphate (pH 7.8) and 2mM 1,2-diaminocyclohexane-N,N,N´,N´-tetraacetic acid. Does anyone know if adding DNAse I to my lysate will still work?
I am not sure of the composition of Zymo's DNA digestion buffer, but I was thinking of supplementing divalent ions to the lysate to counter the 2mM chelating agent in the lysis buffer. However, I am not too sure how to circumvent the phosphate problem. I am not sure how phosphate affects DNAse activity exactly. On the other hand, Thermofisher has a protocol for removing DNA from protein extracts (extracted using lysis reagent in phosphate buffer) using DNAse I. Will the phosphate component of my buffer significantly affect the activity of the DNAse?
Any insight on this matter will be greatly appreciated. Tips on how to solve the viscosity problem altogether are also greatly appreciated.
Thanks
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The following are the conditions when DNase I activity can be affected.
1. DNase I activity is influenced by divalent ions. DNase I has 10 times greater activity in buffer containing both Mg2+ and Ca2+ than either metal alone. Calcium is required to maintain structure and activity of DNase I. Trace amounts of Ca2+ may be present at sufficient concentration for DNase I to be active, but using calcium-free buffers or removal of Ca2+ by adding EGTA can reduce DNase I activity to undetectable levels.
2. DNase I is inhibited by metal chelators, monovalent metal ions such as Na and K (i.e., ≥ 100mM NaCl), SDS even at concentrations below 0.1%, reducing agents and ionic strength above 50-100mM.
3. DNase I is inactivated by heating to 65°C for 10 minutes in the presence of EGTA or EDTA.
4. DNase I is sensitive to physical denaturation. So, mix gently by inverting tube. Do not vortex.
If one uses PBS as an example to be used as the buffer, then monovalent ions present in PBS like sodium and potassium ions will inhibit DNase I activity as they will occupy any of the potential binding sites.
The contents of (1X) PBS are as follows.
137mM NaCl,
2.7mM KCl,
10mM Na2HPO4, and
1.8mM KH2PO4
However, the inhibition of DNase I can be reversed by adding divalent ions. This effect is related to the ionic strength of the system as well as to the positive charge present on the protein. I have not come across anything about phosphate on DNase I activity.
I feel you should give it a try since you also mentioned about the Thermofisher protocol for removing DNA using DNase I from protein extracts (extracted using lysis reagent in phosphate buffer). But do supplement divalent ions to the lysate.
Best.
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I have synthesized a sensor, which has sulphonic acid grp (-SO3H) and Boronic acid as well in it. And has a Molar mass of around 899 and also has an amide bond in it.. I am using Reverse phase HPLC to purify using ACN and Water(0.1%) as mobile phase. As I separate the compounds of one peak, the next very day it is splitting into two peaks in the chromatogram. Is TFA creating a problem? I could not figure it out. Should I need to use a buffer as an additive instead of TFA? Which buffer and how much is good for use? Could you please suggest?
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A molecule that contains sulphonic acid (-SO3H) Boronic acid and amide bonds may not be a good candidate for RP chromatography. Anion exchanger resins and IEX application, or diol phases (maybe bare silica) coupled with HILIC application would also be efficient. Indeed, I do not know the whole structure of the molecule and the hydrophobic interaction it produces.
Sharing a chromatogram could be beneficial.
In RP, TFA acts as a weak ion pairing agent and it improves the resolution. Remain the TFA at both phases at 0.1% concentration and equilibrate the column by injecting several blank injections. Then test your sample. You need to be sure about whether your splitter peak is a kind of configurational isomer, impurity, or artificial drawback of your chromatographic system (set-up). Also, consider your injection solvent composition and observed retention time. Injection solvent must contain a low amount of organic solvent and calculated retention must be reasonable.
If you know the potential impurities (as you said a kind of synthetic molecule, it has probably the known impurities) then it would be easier to evaluate the chromatographic separation of choice.
Good luck,
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I'm using the vanillin-sulphuric acid method to cuantify saponins but the colour that I observe is yellow instead of red-purple.
The method I follow from the literature is:
- 1 ml of sample extract + 0.25 ml 8% (v/v) vanillin in methanol + 2.5 ml 72% H2SO4
- Incubate mixture in 70ºC water bath for 15 min and then in ice for 5 min.
- Read absorbance at 560 nm.
Any sugestion or solution for this problem?
Thanks!
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The method you follow is correct. However, the saponin concentration must be high, more than 300 ppm, for the colour to develop. At lower concentrations, it does look yellow.
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Hi,
I am getting elevated results in my starch analysis. It is about 2-3 % higher than usual. We have not changed anything. We are getting the same results over and over. I have checked the 0.309M HCL, and it is perfect. Does anyone know why it sometimes reads higher?
When we put it into a boiling shaking water bath, we agitate it constantly. I have even tried not agitating it and I get the same values.
I have made the acid up a few times and checked it and it is fine.
The water baths temp is correct.
We filter it using 5-8um filter paper as we have in the past.
Thank you.
Kind regards,
Rob
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Hi Peter and Joseph,
Thank you very much for the detailed replies and time you have both given me.
I have been doing the starch myself, and then I did it with another analyst (I thought I was doing something wrong and needed someone to point out an obvious error in what I was doing - unfortunalty the error wasn't found). The repeatability and reproducibilty percentages are high. We are running a pet food starch from FAPAS in each run as a QC and a potato flakes sample. The pure starch is a good idea to run as well it in place of one of the others.
However, the megazyme method might be the best option moving forward. We have used Megazyme before for starch damage so I am familiar with how they work.
I will order a kit in next week and give it a go.
To you both, thank you again. Your help and expertise are very much appreciated.
Kind regards,
Robert
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Does dissolving the scaffolds in acid work to quantify that using spectrophotometer? or should i wait till the whole of the curcumin is released in the suspension media (PBS or curcumin solvent- ethanol).
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Dear Pavithra Pattabiraman, try extraction. In the following paper it is mentioned how to do that. My Regards
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[(CH3)3NCH2CH2OH]+Cl- + CH3CHCOOH + HOC(CH2CO2H)2 -> ???
2-Hydroxy-N,N,N-trimethylethanaminium chloride + 2-hydroxypropanoic acid + 2-hydroxypropane-1,2,3-tricarboxylic acid -> ???
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The chemical equation you've provided represents the reaction between choline chloride [(CH₃)₃NCH₂CH₂OH]Cl⁻, acetic acid (CH₃CHCOOH), and citric acid (HOC(CH₂CO₂H)₂). Here's the balanced equation for the reaction:
[(CH₃)₃NCH₂CH₂OH]Cl⁻ + CH₃CHCOOH + HOC(CH₂CO₂H)₂ → [(CH₃)₃NCH₂CH₂OC(CH₂CO₂H)₂]Cl⁻ + H₂O + HCl
In this reaction, choline chloride reacts with acetic acid and citric acid to form a product in which the choline chloride molecule is esterified by one of the carboxylic acid groups of citric acid. The balanced equation indicates the formation of the ester [(CH₃)₃NCH₂CH₂OC(CH₂CO₂H)₂]Cl⁻, water (H₂O), and hydrochloric acid (HCl) as products.
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Hello,
I am generating brain organoids. Some media require vitamin B27 +A, but we currently have vitamin B27 minus A vitamin. How bad will it be if we use B27 minus A instead of B27 + vitamin A? We also have retinoic acid. Would it be appropriate if B27 minus A were added (and how much)?
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since B-27 Plus supplement promotes survival and maturation of primary neurons.
B-27 Supplement Minus is identical to B-27 Supplement except for the removal of antioxidant components.
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Hi, I have to prepare the YCFA culture broth and do a bacterial growth test with each of the bile acids, however I am unable to dissolve the acids (lithocholic and ursodeoxycholic), any suggestions on how I could dissolve them? Also, would these acids degrade if I autoclave them?
I would greatly appreciate your advice
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Hello, Bile acids is not so easy to dilute in water actually it forma suspension as in bile acids main fraction is C24 fatty acids. The solubility will increase if you use warm water. Better to use membrane filtration 0.22-0.45 nm than autoclave to avoid degradation og bile acids.
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Please provide information on where I can purchase a 150 kDa, 500 kDa, 1000 KDa and 5000 KDa molecular weight cutoff membrane? for separation of ferulic acid (194 mwt) form mixtue of sample. where almost other molecular wt cut of is ranginng form 100 - 150.
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ok! I will check thank you for your time.
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What are the differences between 50 mM glycine-hydrochloric acid buffer (pH 3) and 100 mM glycine-hydrochloric acid buffer (pH 3), especially regarding osmotic pressure? Why do they have the same pH value but different glycine concentrations.If I need to use it to wash cell , which concentration of glycine buffer is closer to isotonic, thereby ensuring cell survival?
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The difference in glycine concentration results in a difference in buffering capacity, the ability of the solution to resist a change in pH when acid or base is added. The higher concentration solution has greater buffering capacity. For glycine at acidic pH, the pKa of the buffering group (the carboxylate) is about 2.3, so the solution will resist a decrease in pH better than it will resist an increase.
The osmotic pressure is proportional to the concentration of molecules or ions. Isotonic saline has a concentration of 0.9 weight % of NaCl, which is 154 mM NaCl. NaCl is fully dissociated into ions in solution, and therefore 154 mM NaCl has an osmolarity of 308 mOsm, due to the presence of 154 mM each Na+ and Cl-.
The osmolarity calculation for the glycine-HCl pH 3 buffer is tricky. Simplistically, the osmolarity of glycine-HCl is 3 times the molarity, since it is composed of 3 species (glycine, H+ and Cl-). However, this isn't exactly true, since some of the H+ is consumed to form protonated glycine. At pH 3, about 18% of the glycine is protonated on the carboxylate group, so the osmolarity would be a bit less than 3 times the glycine HCl concentration. Another complication is that additional HCl may have been added to bring the pH down to 3, increasing the osmolarity by twice the concentration of HCl added.
Overall, I would expect the 100 mM solution to be closer to isotonic than the 50 mM solution. I'm assuming that the amount of HCl added to lower the pH to 3 was relatively small, since the pKa of the carboxylate group is about 2.3. If it's very important to know the osmolarity of the pH 3 glycine-HCl buffer, I'd suggest looking for an osmometer instrument.
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I would like to calculate the volume from certain concentration,
people used 100 µL of 2 g/L solution then add to 100 ml acidic solution. how much volume should be if I will use concentration of 40 mg/L which will be added to 25 ml solution? Please write the calculations in details. Thanks
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Mo Go I suggest for you to use: ratio and proportion, direct and inverse proportionality to calculate your unknown quantity. Firstly, convert milligram units into gram units or vice-versa, then proceed with your math manipulation to find the unknown quantity, using simple algebraic math manipulation.
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I am facing a reproducibility issue. I am measuring the specific capacitance for my sample (carbide based). I am getting pseudocapacitive behavior in CV curves. The first time while measuring GCD i am getting around 100 F/g at 1 A/g current density, but when i try to repeat the same i am not getting the same value. Moreover the GCD curve is not triangular shape.
Electrolyte used is 1M Sulphuric acid
Mass loading is from 1.3 to 1.8 mg/cm2
Potential window is from -0.1 V to 0.4 V
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Alvena Shahid Thank you for your reply, will check it out
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I used TBAPF6 electrolyte for CV study but it generated anion of my compound. Please suggest me which electrolyte would be suitable for cyclic voltametric study of mild acidic organic compounds?
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TBAPF6/Dichlomethane has too low conductivity. It's advised to use at least 10% CH3CN in dichloromethane to run CV
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How much quantity of sulphuric acid is required for acid hydrolysis of chemically purified cellulose powder to produce crystalline nanocellulose?
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You are very welcome. Good luck with your research!
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PGA solvents are toxic and I need a better approach to create films with this polymer.
In advance, Thank you for you time and consideration.
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A novel melt-foaming strategy using supercritical carbon dioxide can prepare porous PGA scaffolds with controllable morphology and outstanding mechanical properties without toxic solvents. Bioabsorbable poly(glycolide-co-lactide) fibers show increased crystallinity, higher tensile strength, and reduced heat shrinkage after post-annealing, supporting cleavage-induced crystallization. Also, PGA crystals and fibers exhibit high elastic anisotropy due to their planar zigzag conformation, with a tensile chain modulus of 294 GPa and a longitudinal shear modulus of 6 GPa.
Therefore, In vitro hydrolytic degradation of poly(glycolic acid) reveals a two-stage degradation mechanism, with irradiation decreasing this mechanism and resulting in a monotonic degradation profile at 20 Mrads. It is also worth noting that the buffering in a phosphate-buffered physiological saline solution accelerates the degradation of poly(glycolic acid) structures, potentially due to the presence of Na2HPO4, which removes degradation products and accelerates tensile strength loss.
Please see this researches that might be useful:
· Novel fabricating process for porous polyglycolic acid scaffolds by melt-foaming using supercritical carbon dioxide, ACS Biomaterials Science & Engineering, 2017. DOI: 10.1021/acsbiomaterials.7b00692
Best regards,
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Respected Researchers
Kindly explain the below mentioned formula for the calculation of TAN. I am not able to understand 4 in this formula.
Thanks in advance
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It contains the concentration of the titrand and possible dilution factors. You need to look at the exact analytical procedure behind the formula.
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45ml of 55% w/v sulphuric acid was taken. To hydrolyze 1gram of bleached mango wood cellulose. On addition of this powder to the sulphuric acid at 45°C , the mixture turned dark black! Whereas other article suggest that nanocellulose suspension should have been whitish? Why is it so?
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Sulfuric acid solutions with high concentration usually carbonize organic compounds.
Can you share an article you follow?
My colleagues have had experience with selective hydrolyzation of amorphous part of cellulose and production of microcrystalline cellulose from different kind of sources.
But concentrations were 0,050-0,1% HCl or similar
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Preparation of EDTA-
Citric acid solution in water.
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They do not react chemically.
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I have come across a suggestion to use HF and HNO3 mixture. But exact ratio is not clarified. What should be the exact ratio of these two acids to smoothly pickle Ni sheets? Any impurity in form of oxides must be absent before electrodeposition.
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Hi Lucky,
Thought am not sure the reason in choosing these 2 strong acid to work in your processing for pre-cleaning of Nickel sheets.
*** Watching the environmental issue as HF is never an easy item to control.
Suggestion to verify the purity of your Ni-sheet.. Avoid trace impurities may lead you to undesired-finishing, such as micro-pitting.
You may select the best optional of formulating picking-acidic solution at best concentration for surface pre-clean, b4 even to start electroplating processing.
Good luck.
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Hello, I have nylon fabric dyed with Acid dye. I need to prove for part of my project, is it possible or not possible, the reaction between dye molecules absorbed in nylon fabric with water molecules when the fabric is immersed in water. I hope someone helps me to find the best answer to this question.
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Normally the acid dye attaches to the Nylon by electrostatic forces (negatively charged dye SO3- and the material is positively charged NH3+), so in water there will be no reaction with water because the chemical potential of the dye is weaker on the fiber than in water.
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Hello everyone,
I need to use a final concentration of 90ng/uL of BSU polymerase in a final volume of 50uL. The NEB BSU polymerase specification sheet indicates 5ng/uL as the stock concentration. How do I convert units/uL to ng/uL knowing that one unit is defined as the amount of enzyme that incorporates 10 nmol of dNTP into acid insoluble material in 30 minutes at 37°C.
I am not 100% sure but I know that:
Specific activity (units/ng) = 5 U/μl / 10 nmol
To convert nmol to ng, we need to know the molecular weight of dNTP. Assuming an average molecular weight of 330 g/mol for a single nucleotide, we can calculate the specific activity in units/ng as follows:
Specific activity (units/ng) = 5 U/μl / (10 nmol x 330 g/mol)
and... if this is correct... then what?
Thanks a lot :)
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I believe you meant to write that the stock concentration is 5 U/µL. You can't convert this to an enzyme concentration of 90 ng/µL unless you know the specific activity (e.g., in U/mg) of the stock solution. 90 ng/µL refers to the protein concentration, not the nucleotide concentration that is produced by the reaction.
The specific activity may be written on the label or in the product information sheet or certificate analysis for the particular lot of the product that you received. This information may be available on-line from NEB. Once you know the specific activity, the conversion is simple.
For example, suppose the specific activity is 1,000 U/mg.
You need 90 ng/µL = 90 x 10-6 mg/µL
90 x 10-6 mg/µL x 1,000 U/mg = 0.09 U/µL
Since the stock solution is 5 U/µL you must dilute by a factor of 5/0.09 = 55.6-fold into the reaction.
Or, you could do it this way, using the same example specific activity of 1000 U/mg:
(5 U/µL) / (1000 U/mg) = 0.005 mg/µL = 5 µg/µL = 5000 ng/µL
The required dilution factor is 5000/90 = 55.6
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1. Oleic acid
Oleic acid is classified in a long chain acid. Should we keep in the acid storage cabinet? or keep in the general storage cabinet? which one would like to recommend?
2. Triethylamine
Triethylamine is classified in both "flammable" and "base". So, should we keep in the flammable cabinet? or keep in the base storage cabinet? which one would like to recommend?
would you give me an answer with reference articles?
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Oleic acid is not considered much of a threat as an acid. I looked at several sites online and could not even find a pka for it. I did find pka for some saturated acids
in the bilayer and they are essentially neutral. So that would go in general storage.
Triethyl amine is a strong base as organic bases go. https://www.masterorganicchemistry.com/2017/04/18/basicity-of-amines-and-pkah/
It is not a strong base compared to KOH or NaOH. My opinion is that it is not a strong enough base to be stored with those. I would put it in the flammable liquids cabinet.
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What are the possible ways of rectifying a lack of fit test showing up as significant. Context: Optimization of lignocellulosic biomass acid hydrolysis (dilute acid) mediated by nanoparticles
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Which steps, materials, temperature or stirring contain this process? Is there any publish or book? I want to materials make up only sulphuric acid and pyrrole monomer. Because my materials are unsufficient.. Thank you for your attention.
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Alvena Shahid thank you for your clear answering.
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I intend to modify a media, to better access de potential of bacteria (Pseudomonas and Bacillus) to produce organic acids in solid medium.
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Italo Alves Freire I think you can find many answers in works on solid-state fermentation:
Chundakkadu Krishna (2005) Solid-State Fermentation Systems—An Overview, Critical Reviews in Biotechnology, 25:1-2, 1-30, DOI: 10.1080/07388550590925383
Michael Mattey (1992) The Production of Organic Acids, Critical Reviews in Biotechnology, 12:1-2, 87-132, DOI: 10.3109/07388559209069189
Demain, A. L. (2006). Overproduction of microbial metabolites and enzymes due to alteration of regulation. In Advances in Biochemical Engineering, Volume 1 (pp. 113-142). Berlin, Heidelberg: Springer Berlin Heidelberg.
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Hi!
I have a bacterial strain that changes the pH of the broth making it acidic. I want to get a knock-out mutant that is unable to lower the pH.
Since I'm using transposon mutagenesis without finding the transformant I want, I was considering to analyse the annotated reference genome to find the genes involved.
Honestly, I don't know where to start from.
I mean: should I look into the methabolic pathway using Kegg database or there are better ways to dig into the genome? Shoul I look for genes involved in the production of acidic compunds? How?
Any advice is appreciated.
Thanks!
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Would buffering the media not also be a solution?
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I just doing an experiment in my lab for copolymerization Acrylic acid and maleic acid using hydrogen peroxide as initiator in 103 degC. But, why in my Polymerization process forming a foam?
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Hey there, friend Shodiq Yusti Wardana! Now, let me tell you Shodiq Yusti Wardana, the foaming issue in your copolymerization experiment might be due to a couple of factors. First off, consider the concentration of your monomers – too high a concentration can lead to increased viscosity, resulting in foam formation during agitation.
Secondly, the hydrogen peroxide initiator might be decomposing too rapidly, generating gas and causing bubbling. You Shodiq Yusti Wardana might want to tweak the initiator concentration or look into a more controlled initiation process.
Also, keep a keen eye on the reaction kinetics. If the reaction is proceeding too quickly, it can lead to the rapid evolution of gases, contributing to the foam.
Now, temperature plays a vital role. 103°C is on the higher side for this reaction, and it might be promoting faster reactions and gas evolution. Try adjusting the temperature to find the sweet spot for your copolymerization.
Lastly, equipment matters. Ensure that your setup allows proper venting of gases to avoid excessive pressure build-up leading to foaming.
Remember, precision in your experimental conditions and a keen eye on these factors can help you Shodiq Yusti Wardana tame that foaming issue. Let me know how it goes!
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I need to wash glass ampoules to remove organic residues and other chemical contaminant. Which kind of acid and which concentration of it is needed?
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Dear friend Sima Zarei
To clean glass equipment like ampoules, use a diluted hydrochloric acid solution (5-10%) for effective removal of organic residues and chemical contaminants. Handle with caution, wearing gloves and goggles, and perform in a well-ventilated area.
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I am currently attempting to culture cell lines in a high %CO2 incubator to mimic hypoxic conditions. Unfortunately we do not have incubators that can adjust the O2, nor do I have access to a hypoxic chamber so increasing the CO2 to 20% seems to be my only option.
The resulting issue: cell culture media typically contains a sodium bicarbonate buffering system that is optimised for incubators set between 5-10% CO2, so in a 20% CO2 incubator the media becomes slightly acidic.
Theoretically, I could increase in concentration of NaHCO3 to 8g/L for 20% CO2 to buffer the media to a pH of 7.4 (a reference for the calculation used to obtain this value https://www.researchgate.net/deref/https%3A%2F%2Ftools.thermofisher.com%2Fcontent%2Fsfs%2Fbrochures%2FD19558.pdf?_tp=eyJjb250ZXh0Ijp7ImZpcnN0UGFnZSI6InNpZ251cCIsInBhZ2UiOiJxdWVzdGlvbiIsInBvc2l0aW9uIjoicGFnZUNvbnRlbnQifX0), this however leads to changes in the osmolarity that my cell lines can't seem to handle.
Does anyone have any suggestions on how I could adjust my cell culture media to suitably culture cells in 20%CO2?
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Use a phosphate or citrate buffer as those are more resistant to pH shifts with higher CO2. Also increasing the carbon dioxide does not mimic hypoxia. Consider using a candle jar method if you ae resource limited (pickle jar and a paraffin candle).
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Using waste mango woods as the source, how can nanocellulose be produced from it using acid hydrolysis process
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Kurt Haunreiter Thank you so much for paper recommendation!
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Dear colleagues;
I hope you are all doing fine.
I have a question regarding leady oxide used in the lead-acid battery industry.
we intended to lower the acid absorption of particles, so we tried to increase the particle size of LO.
we decreased the power of the ball mill machine, and we changed the temperature, .... but none of them worked! What else would you suggest to change in the machine's setting?
Thanks in advance
My best
Mahboubeh
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Hey there Mahboubeh Alipour! It's me, ready to tackle the challenge of reducing acid absorption in your leady oxide powder for those batteries. I don't settle for less than the best, so let's shake things up:
1. **Milling Time:**
Adjust the milling time. Longer milling times can lead to finer particles and increased acid absorption. Experiment with shorter milling durations to coarsen the particles.
2. **Ball Size:**
Change the size of the milling balls. Larger balls tend to produce coarser particles. Give those tiny balls a break and bring in the big guns for a coarser end product.
3. **Mill Speed:**
Vary the mill speed. Lowering the mill speed might reduce the impact forces and help in obtaining larger particles.
4. **Additives:**
Introduce additives during milling. Some additives can alter the surface properties of particles, affecting acid absorption. Explore different compounds to find the magic formula.
5. **Pre-Milling Treatment:**
Consider pre-milling treatment of leady oxide. Techniques like annealing or subjecting the leady oxide to a specific environment before milling can influence particle characteristics.
6. **Post-Milling Processing:**
Explore post-milling processing steps. Techniques like air classification or sieving can help segregate particles based on size.
7. **Milling Environment:**
Experiment with the milling environment. Factors like humidity and temperature can influence milling outcomes. Sometimes, a change in climate can make a big difference.
8. **Equipment Calibration:**
Ensure your milling equipment is well-calibrated. Any deviation in the machine's settings can impact the milling process. Check and double-check those settings.
9. **Alternative Milling Techniques:**
Explore alternative milling techniques. Techniques like attrition milling or different types of ball mills might produce the desired particle size distribution.
Remember, the key is in the details. Play around with these suggestions and observe the changes. I dont settle for mediocrity, so go out there and make that leady oxide the best it can be!
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I need just the name of the solvent
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The best way to use zinc oxide is to prepare the oxide using zinc acetate. As for zinc oxide, it is impossible to dissolve, and I have tried various methods.
As for the rest of the oxides, use polar solvents such as DMSO or m-crasil
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I have implemented an adsorption test of heavy metal solution using wood straw biochar(without any Acid/Alkali activation) as an adsorbent. The degassing temp was 200C for 6h. After adsorption, there is a 10-15% increase in surface area.
Kindly note that the test was repeated 2 times with the nearby same results. What could be the possible reasons for it?
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According to the theory, with the same structure of the surface of the adsorbent, adsorption is determined by the specific surface of the adsorbent. Heavy metal ions are usually d-metals in structure. They form complexes well with electron donors on the surface of the adsorbent. Cadmium ion can be adsorbed on one adsorbent without complex formation, and on another with it.
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basically, we are conducting a electrocoagulation experiment and will be using this process to reduce nitrate to a certain level. However, we are struggling on what reagents to use since the nitrate checker from HANNA instruments is not an option since it can only detect from 0 to 75ppm. In the nitrate checker from HANNA instruments, they used malonic acid for their reagent but I'm not sure if its still useable at higher concentrations of 75ppm or do we use Griess reagent?
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Dear all,
A very good day!
I need to quantify the amount of poly-gamma-glutamic acid levels in my samples, but I do not want to use chromatography methods or western blot. Are there any easy-to-use kits for colorimetric absorbance assays to recommend to me? Thank you all for your kind assistance and have a great day!
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CTAB method
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Which is the best method to perform an acid digestion of chicken eggshell for metals analysis?
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Hello, dear researcher, considering that most of the egg shell is calcium carbonate, it is suggested to use dilute sulfuric acid to prepare the solution and check the elements in it.
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My paper "Structural, thermal, and dielectric properties of (S)-6,6'-([1,1'-binaphthalene]-2,2'-diylbis(oxy)) dihexanoic acid' is not yet published . What is the reason that ResearchGate has it??? I don't like it to be online before publishing.!!!
Professor Raisa Talroze
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https://www.researchgate.net/publication/375072605 is a preprint, taken from Elsevier's server - click on the DOI link to go to the original page. According to an agreement with Elsevier, RG takes publications from their servers. You have to blame the publisher for putting a preprint online, not RG. However, I guess it is part of the authors' contract with Elsevier.
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Does ethylenediaminetetraacetic acid (EDTA) used in the removal of heavy metals from water affect pH of water?
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Thank you so much my dear Professor.
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...
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It also depends on if you are studying auxin transport/uptake. Some auxin analogs can cross the membrane without reliance on a transport protein. Cost and stability are of course factors too.
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Good afternoon, dear colleagues!
I need help with calculating the concentration of individual phenolic acids that have been identified by HPLC. In one of the samples of plant material, I determined
clorogenic acid - 24.16078 µg/ml;
caffeic acid - 13.66435 µg/ml;
syringic acid - 2.00828 µg/ml;
benzoic acid - 1.78858 µg/ml;
p-coumaric acid - 3.17923 µg/ml;
trans-ferulic acid - 8.21272 µg/ml;
synapic acid - 90.35565 µg/ml
trans-cinnamic acid - 1.54068 µg/ml;
cinnamic acid - 45.18552 µg/ml.
I need to convert these values to mg/g dry weight.
The weight of the dry plant material taken for extraction was 0.5 g.
I would really appreciate your help. I will be very grateful.
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The gram dry matter expression must be expressed clearly. If it is a solution obtained from an extract, it can be said to be per gram of extract. If it is to be expressed for the solutes in the current solution, all their concentrations have already been given and they constitute the total solute mass in 1 ml. We can find the amount of each solute by proportioning it to the total mass.
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In my country, we have HCL and Nitric acid, does anybody knows a method of acid digestion of clay in order to used ICP-MS? I need the protocol of acid digestion.
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Upon receiving PEG we titrate to find its base value so it can be neutralized with HCl for certain processes. It’s typically basic on the micromolar level (I think from residual KOH or another base in the manufacturing process) so it only takes a few ml of 1M acid per kg. Then it’s shaken up and sampled and the base level looks to be zero or slightly acidic. But after drying the material by heating and bubbling nitrogen it once again registers a positive base value and needs more acid. Is this from HCl coming out during drying, loss of dissolved CO2, or something else? At some degree of excessive over acidification this isn’t a problem but I’m still curious to what’s happening. Thanks for any thoughts!
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I don't know but if it 'stays neutralised' after a second round then it's also possible that there is a spatial (stereo?) constraint
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Hi all.
I'm interested in a possibly trivial question.
What is the real significance of pH 4.5 and 6.8 dissolution media when analyzing solid dosage forms when we have immediate release in pH 1.2 media? After all, once the active substance enters the stomach, it completely dissolves in gastric juice. Having passed into solution, all the properties of crystals such as polymorphic form, particle size, etc., affecting the dissolution rate, are already, as it were, reset to zero? Why should we compare tablets in environments with pH 4.5 and 6.8? After all, a tablet or capsule cannot bypass the acidic environment of the stomach, where it is supposed to dissolve?
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Although an immediate released tablet is designed to dissolve in gastric juice where pH is highly acidic but this pH can be altered due to prescence of food, nature of food and different patho-physiological conditions loke dyspepsia, ulcer etc. Before food arrives, the stomach normally has a pH between 5.0 and 6.0. In young and healthy adults it takes about 45 minutes before enough acid is generated to drop the pH to 3.0.
Therefor study is done at pH 4. and significance of study t pH 6.8 is to study behavior of tablet in duodenum.
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Why is the rhizosphere acidic and how does Rhizobium bacteria help farmers in agriculture?
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The rhizosphere is the region of soil directly influenced by the roots of plants. It is acidic because of the release of organic acids from the roots. These organic acids help to dissolve nutrients in the soil, making them more available to the plant. They also help to protect the plant from pests and diseases.
Rhizobium bacteria are a type of bacteria that live in the rhizosphere of leguminous plants, such as peas, beans, and lentils. Rhizobium bacteria form nodules on the roots of leguminous plants and fix atmospheric nitrogen into a form that the plant can use. Nitrogen is an essential nutrient for plant growth, and Rhizobium bacteria help to reduce the need for synthetic nitrogen fertilizers.
Here are some of the ways that Rhizobium bacteria help farmers in agriculture:
  • Reduce the need for synthetic nitrogen fertilizers. Rhizobium bacteria can fix up to 200 kg of nitrogen per hectare per year, which can significantly reduce the need for synthetic nitrogen fertilizers. This can save farmers money and reduce the environmental impact of agriculture.
  • Improve crop yields. Rhizobium bacteria help leguminous plants to grow better and produce more seeds. This can lead to higher crop yields and increased profits for farmers.
  • Improve soil health. Rhizobium bacteria help to improve soil structure and fertility. They also help to reduce soil erosion and improve water retention. This can lead to healthier soils and more sustainable agriculture.
Overall, Rhizobium bacteria are a valuable tool for farmers. They can help to reduce costs, improve yields, and improve soil health.
In addition to the above, Rhizobium bacteria can also help to:
  • Suppress pests and diseases. Rhizobium bacteria can produce compounds that inhibit the growth of pests and diseases. This can help to reduce crop losses and improve plant health.
  • Improve plant tolerance to stress. Rhizobium bacteria can help plants to tolerate stress from drought, salinity, and other environmental factors. This can help to improve crop yields in challenging environments.
Overall, Rhizobium bacteria are a versatile and beneficial group of bacteria that can help farmers to improve their agricultural practices.
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I am working on a chiral N-Boc-3-heteroarene(imidazole derivative) substituted piperidine derivative, and we observed a slight drop of optical purity after removal of the Boc in HCl/dioxane(2M).
Considering acidic condition is stable for alpha-H of EWG, what else may be the cause for this racemization?
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Without more details of the structure, it is hard to say. But things to consider: your 3 substituted piperidine actually has 2 stereogenic centers. N1 and C3. N1 can readily invert and may be in equilibrium between 2 forms. Removal of the Boc may alter the equilibrium.
there can be other acid catalyzed isomerizations but without the detailed structure it is hard to know if they are relevant.
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can we say 4-armed H-shaped Poly(acrylic acid) charge reversed from negative to positive at pH 5.4? because its pKa may increased?
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Only partial charges (+ and -) due to the difference in electronegativity in C=O and in O-H.
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I need to recover the lignin fraction from the waste solution after alkali treatment, bleaching and acid hydrolysis of lignocellulosic fibers. Could anyone please provide me a suitable route of recovery of lignin from the spent solutions?
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Thanks
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I will use hydroiodic acid to wet etch tin dioxide, but how to treat hydroiodic acid waste liquid is a problem.
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While stirring the waste material containing Hydroiodic acid , adds large amounts of an ice water solution ( 1:10) of base in such as sodium bicarbonate, calcium hydroxide, or sodium hydroxide for neutralizing concentrated acid . Dispose of solution down the drain followed by 20 parts water to the neutralized solution.
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Can methyl formate and ethyl acetate be converted to original acids and alcohols by electrical reduction? If possible, please provide relevant literature, thank you very much.
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There is no oxidation or reduction involved in ester hydrolysis. In some special cases it may be possible to catalyze hydrolysis with electric potential but not with common aliphatic esters.
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For long Covid this might help. i just thought will send this. The acidic pH in absence of oxygen might help as the SARS-CoV2 virus had issue replicating in high altitude.
Those having long Covid *can do walking without inhaling air in breath.* To the level of comfort. In absence of oxygen the CO2 is built up. Say in cycles of one minute. This elevated CO2 influences the pH to acidic and that will interfere with the viral replication and provide immunity by altering & inactivating the virus. This absence of O2 will be anaerobic glycolysis with high lactic acid.
Acids have shown to denature the protein coat of virus. Here the CO2 formed in the body before being released from lung is being used to slightly alter the pH to inactivate the virus. The lactic acid also in muscles the way it stiffens in absence of oxygen.
When tested in positive long Covid patient One feels relief from symptoms after few days and the symptoms of long Covid reduce in intensity.
One can few times a day 3-4 say while walking for 5-10 minutes . Or once for say 30 minute walk what ever time one can exhale the breathe and continue walking. By understanding the level of one's comfort. THIS IS ONLY FOR PEOPLE WHO ARE NORMAL HEALTHY WITHOUT ANCILLARY CONDITIONS but have long Covid
Idea is using the acidic pH to alter the virus in the arterial blood by the CO2 forming carbonic acid and the acidic pH will do the work.
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Because Covid virus is enveloped one which is sensetive to all inactivating agens among them acids
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Recently, i carried out a copolymerisation reaction about 2-acrylamido-2-methylpropane sulfonic acid (AMPS) and itaconic acid. When i dried the reaction solvent in vacuum condition at 60 ℃ after 12 h, i found that the product became hard and cross-linked. Why is it not powdery solid? What method should i use if i want to obtain the powdered solid? The above experiment is to synthesize a scale inhibitor. Thanks in advance for your help!
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Jiaqi Chen I have zero experience with column chromatography, so I won't be able to comment.
But freeze-drying is definitely an option. I forgot to mention it last time.
There is also one "dumb" approach — poor the reaction solution in petri dish, plate or tray and left it dry in an ambient condition.
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This is the third time I've tried to start a discussion about global warming. The first time my topic ended up in the “acid” section, the other two times in the “Black Sea” section. I continue to try to frame the discussion in the "global warming" thread.
Each time I lowered the level of discussion.
My presentation on this topic does not open on the site and this is the reason for opening the discussion.
Along with global warming, there are other reasons for changes in sea levels. One of these reasons is a change in the morphometric characteristics of the World Ocean due to the “fallout” and “melting of carbonate snow” in the thickness of the bottom sediments of the World Ocean. The direction of this continuous process is regulated by the acidity of the waters of the World Ocean, which in turn depends on the ratio of the partial pressure of carbon dioxide in the atmosphere and the surface layer of the ocean and on the intensity of the release of acidic fluids from the lithosphere in the bottom and deep layers of the World Ocean.
Carbon dioxide dissolving in water increases its acidity, and acidic waters dissolve carbonates contained in bottom sediments.
Maps are provided (http://earthtrends.wri.org/updates/node/245) reflecting the dynamics of changes in the content of aragonite in the bottom sediments of the World Ocean over the past 230 years. The volume of aragonites became smaller. The ocean became deeper. The water level in the ocean has dropped.
This is written about in my monograph “Modern changes in the level of the Black Sea as the basis for the strategy of construction development of the coasts”.
Look how much CaCO3 can be dissolved by acidic sea water in a coral reef. This photo is from my discussion "Why does a bay in a coral reef coincide with a submarine discharge of acidic groundwater?".
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There are minerals that are formed as a result of carbon dioxide dissolving in water. In the ocean, one calcium ion removes a molecule of carbon dioxide from solution. CaCO3 minerals fall to the bottom. They can be formed chemically and biologically. Such formations include aragonites (from Wikipedia - Aragonite is a mineral, one of the natural polymorphs of calcium carbonate (CaCO3).) The most widespread geological rocks are shells (northern regions) and corals (tropical zone).
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I am synthesizing a membrane for Li+ adsorption, in some papers they mention to filtrate first (0.22 micro filter syringe) then do acid digestion, others don't. I am confused about the benefit of it since there will be no solids in the water (membrane or powder to be removed during filtration). Thanks!
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AI answer
There are a few reasons why you might need to run acid digestion after membrane adsorption of Li+.
  • To remove any remaining membrane or powder. Even if you filter the solution first, there may still be some small particles of membrane or powder remaining. Acid digestion will dissolve these particles, ensuring that all of the Li+ is released into the solution.
  • To break down any complexes that the Li+ may be forming with other ions in the solution. Li+ can form complexes with a variety of other ions, such as Ca2+ and Mg2+. These complexes can make it difficult to measure the Li+ concentration accurately. Acid digestion will break down these complexes, freeing up the Li+ so that it can be measured.
  • To concentrate the Li+ solution. If the Li+ concentration in the solution is low, acid digestion can be used to concentrate the solution. This can make it easier to measure the Li+ concentration and to perform other analyses on the solution.
  • Finally, acid digestion can help to remove any other ions that may be adsorbed on the membrane. This can be important if you are trying to measure the selectivity of the membrane for Li+ ions.
Whether or not you need to run acid digestion after membrane adsorption of Li+ will depend on your specific needs and the goals of your experiment. If you are unsure, it is always best to consult with an expert.
Here are some references that you may find helpful:
  • Kumar, S. Senthil, and T. S. Ravindran. "Adsorption of lithium ions from aqueous solutions on activated carbon." Journal of Colloid and Interface Science 285.1 (2005): 35-43.
  • Li, Yong, et al. "Adsorption of lithium ions from aqueous solutions using a novel mesoporous carbon." Carbon 43.1 (2005): 168-172.
  • Zhang, Yong, et al. "Synthesis and adsorption properties of a mesoporous silica for lithium ions." Microporous and Mesoporous Materials 133.1-3 (2010): 117-123.
  • B. Yuhua, C. Yanhui, L. Minghu, "Adsorption of lithium ions from aqueous solution by sodium titanate nanofibers," Journal of Materials Science 45 (7): 1890-1896 (2010).
  • X. Li, J. Ma, J. Wang, "Adsorption of lithium ions from aqueous solution by graphene oxide," Journal of Hazardous Materials 193-194: 48-56 (2011).
  • Zhao, Y., Zhang, X., Chen, Y., Wang, S., & Wang, J. (2020). Removal of lithium ions from aqueous solutions by a novel activated carbon/aluminum composite. Journal of Environmental Chemical Engineering, 8(1), 103639.
  • Zhou, L., Zhang, J., Deng, S., Liu, H., & Zhang, X. (2018). Adsorption of lithium ions from aqueous solutions by zirconium phosphate-based composites: A review. Chemical Engineering Journal, 334, 188-202.
All I done collect 3 answers in one passage.
Good luck
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From the EIS plot i have ( ie Nyquist plot), for plant extract in an acidic medium for corrosion inhibition on mild steel, how can i find the inhibition efficiency, double layer capacitance and the solution resistance.
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No it is not -Z(Fmax). The characteristic frequency is the frequency at which the minimum imaginary part is measured. See the attached image.
Best regards,
Nicolas
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I have synthesized CNCs from MCC now i have to dope it with metal oxide how can i do acid it?
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Cellulose nanocrystals (CNCs) can be doped with metal oxide to enhance their properties for various applications. The document mentions the synthesis of flower-like manganese dioxide nanostructures on cellulose nanocrystals for high-performance supercapacitors and wearable electrodes. It also discusses the preparation of a ternary nanocomposite of poly(3,4-ethylenedioxythiophene), nanocrystalline cellulose, and manganese oxide for supercapacitors. These examples demonstrate the potential of doping CNCs with metal oxide for improved performance in energy storage devices.
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I have seen numerous excellent research papers where metallic nanoparticles are used as carriers for enzymes or acids in lignocellulosic biomass pretreatment. But is it possible where the nanoparticles alone will help in the breakdown of biomass into simpler sugars.
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Rajaiah Alexpandi Dear sir, I have seen a few papers on catalytic iron oxide nanoparticles for delignification but not on cellulose breakdown. Now that you mentioned it, could you kindly suggest the papers that have reported such a thing?
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Please answer
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Hello Abdullah Al Ragib Abdullah Al Ragib,
there is already a question on the solubility of PET, which you can find here:
Maybe this can help you with your problem.
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Suggest,me some solvent of pectic acid as it is insoluble in water,hot and cold water as well.
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Try to mix the pectin thoroughly with a few drops of ethanol. When the ethanol has wetted the pectin, you can add water to dissolve it and make your desired solution.
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There is a USEPA standard on this I believe, but I am having trouble finding it. Our lab washes dishes and we place dried dishes in the HCl acid bath to remove contamination but focus especially on phosphorus removal. We need to have the volume of the bath increased a bit (it is about 6L).
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Thanks for your answers! I will use an HCl bath (still deciding on the concentration to keep) and also soak new glassware in HCl, as we just got some.
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I need some 2-substituted malonic acids. For example 2-(adamantan-1-yl)malonic acid. It is easy to prepare corresponding ethyl or methyl ester. But any attempts to hydrolyse it lead to decarboxylation. In my example the only product is 2-(adamantan-1-yl)acetic acid.
What I have alredy tried:
LiOH, NaOH, KOH in various concentrations in water and alcohol solutions
Freezing reaction mass down to -19C
Various concentrations of HCl in water.
Please let me know if there is any working method to hydrolyse such esters or another approach to synthesize 2-substituted malonic acids.
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You can use LiBr, Et3N and MeCN (containing 2 vol % of water) reaction conditions. These conditions allow room temperature hydrolysis to be carried out (15 min - 48h). This is the reference that related to:
But I don't know examples of application this method for dialkylmalonate substrates. If you try this, please share the results.
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Is there any esay way to clean quartz uv cuvetts from hard sticked precipitites using availble chemicals in the lab such as acids or basis, not expensive commercial products ?
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Do they still let you use cleaning solution? We made that in the lab, I believe from sulfuric acid and sodium dichromate. Nasty stuff, but it removes just about everything given a little time.
On the basic side KOH in alcohol does a good job on many things. Again, nasty stuff and it can etch glass, but not quartz.
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So far I have seen that organic acids are used to kill off spent yeast from the brewing industry before being fed to animals such as pigs. The amount of acid needed to achieve a satisfactory kill off seems to be quite cost prohibitive so I was wondering why I have never seen formaldehyde containing products being used for the control of yeast in animal feed in regions where formaldehyde is allowed? Thanks
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Typical commodity pig feed in general does not need to be sterilized unless there are certain animal products in it. Acidifying the brewers yeast halts its growth which can be problematic during processing and storage, especially if it is mixed with fermentable sugars such as might be found in various grains. Also, some brewers feel their strains are highly proprietary and would want to prevent them from being easily cultured.
Formaldehyde might not be an allowable feed additive. As Martin noted, it would reduce its nutritional value, likely by forming undesirable adducts with the proteins.
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I'm trying to obtain xylose crystals from the aqueous phase of an acid hydrolysis-derived process. After evaporating the water, we performed an ethanol extraction in cold. It was supposed to yield xylose crystals, but I had none. Would any of you recommend a different protocol?
Emilio Vieyra
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We have a patent over this process in Brazil BR102012013327(B1) see at espacenet.com
ABSTRACT BR102012013327A2
CRYSTALLIZATION OF XYLITOL IN WATER-ETHANOL USING XYLITOL AND SILICA (NANOPARTICULATE) PYROGENIC AS SEED, belonging to the sector of saturated compounds having hydroxyl groups attached to acyclic carbon atoms, in the form of acyclic polyhydroxy alcohols, consists of a xylitol crystallization process contained in a water-ethanol mixture through crystallization induced by heterogeneous primary nucleation, having fumed silica (nanoparticulate) as seed. The field of application and objective of this invention consists in the recovery of xylitol obtained by any means of production, and the invention consists in the application or use of fumed silica (nanoparticulate) with crystals of 5 to 7 nm in the formation of crystals with heterogeneous nuclei, aiming at the more efficient crystallization of xylitol in saturated solution. In the process "CRYSTALIZATION OF XYLITOL IN WATER-ETHANOL USING XYLITOL AND (NANOPARTICULATE) PYROGENIC SILICA AS SEED", for nucleation, grains (nanometric) of fumed silica are used in the crystallization process by cooling, using the initial saturation temperature of xylitol and a cooling speed that facilitate the formation of xylitol crystals in the solution.
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Is Hypoglycin A acidic or basic? At what pH is it stable?
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To determine whether Hypoglycin A is acidic or basic, we need to consider its chemical structure and any ionizable functional groups. Hypoglycin A has an amino group (NH2) and a carboxylic acid group (COOH) in its structure. The amino group can act as a base, while the carboxylic acid group can act as an acid. In summary, Hypoglycin A contains both acidic and basic functional groups, with the carboxylic acid group contributing to its overall acidity and the amino group contributing to its overall basicity.
The specific pH at which Hypoglycin A might be more acidic or basic depends on the conditions of the solution it's present in. The stability of Hypoglycin A depends on several factors, including pH, temperature, and other environmental conditions. To determine the specific pH range at which Hypoglycin A is most stable, experimental stability studies would be needed.
Other researchers may contribute to pH stability. I recommend you consult the scientific literature.
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Hello everyone,
I wish to measure the total protein concentration of some samples but my standards are always bended rather than giving a nice straight line.
I first tried to make the standards with BSA but also tried Ovalbumine. Here I though that maybe my Bicinchoninic acid has went out so I bought a BCA kit but I keep having the same bended standard curve (see image)...
Has anyone any idea of what is going on? What can I try to fix that?
Thank you for your help,
Best regards,
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The standard curve bends because there is not enough of the detection reagent to bind to/react with the higher concentration of proteins. Beyond that, there is a linear phase (500-2000), which may be due to precipitation of the protein scattering light.
The usable part of the standard curve is the linear part in the lower concentration range (0-125).
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lipohydroxy acid is a derivative of salicylic acid which is in white solid crystalline form,is it possible that LHA is also solid.
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No doubt, Salicylic acid is solid in nature and LHA is a derivatives of salicylic acid and is actually used as a liquid gel in a skincare which found in liquid form..
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Is chronic gout only with High Euric acids or without Euric acids below 5?
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What is probenesic acid? If uric normal but feeling pain of Gout then what to do,?
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Hi everyone
What is the protocol for an acid protease test, excluding the use of hemoglobin? I am seeking cost-effective testing protocols.
#acid protease
#protocol
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The use of Fluorescence Resonance Energy Transfer (FRET) peptides for measurement of clinically important proteolytic enzymes.
Carmona AK, Juliano MA, Juliano L.An Acad Bras Cienc. 2009 Sep;81(3):381-92. doi: 10.1590/s0001-37652009000300005.PMID: 19722010 Free article. Review.
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Currently, I'm searching the best method to quantify Jasmonic Acid in plant tissue. Previously I have tried to analyze by using GC-MS but I failed. I am planning to try HPLC and the available HPLC that I had found is UV-detector. Can anyone who had an experience on this analysis advise me, what is the best gradient elution to apply with a mobile phase of acetonitrile and triethylamine? Or any other suggestion? Thank you in advance.
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Hola, buenos días
Ante todo me alegra saber nuevamente de Ud.
Por otro lado, cualquier otra duda puede consultarme, me agrada el intercambio de experiencias con colegas de diferentes instituciones.
Le añado además que el trabajo con los ácidos orgánicos de cadena corta y larga es muy interesante, versátil y sobre todo muy útil.
Le refiero, que en septiembre próximo estaré impartiendo clases prácticas de cromatografía en la Facultad de Química de la Universidad de la Habana a alumnos del cuarto año de Licenciatura en Química.
Saludos cordiales
Lic. Luis E Jiménez Rodríguez, MC
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Salt formation of weak acid causes ionization of drug due to which solubility increase but we have studied drug absorbed in unionized form then how salt formation will improve the absorption of a drug?
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Due to the effect of diffusion layer on its salt form
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How can I maintain a pH lower than 3 in an aqueous solution when using metallic iron as a reductant, considering that the iron's reaction tends to increase the pH? Any recommendations for suitable buffer solutions or methods to achieve this?
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Doaa Eladl , You need to consider the chemistry of the system, but I found that a good excess of acetic acid works better than most of the traditional buffer systems for some cases of applying nanoparticles of iron..
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Where does carbon go during decomposition and decomposition of organic matter contribute to the development of soil acidity?
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When the animals die, they decompose, and their remains become sediment, trapping the stored carbon in layers that eventually turn into rock or minerals. Some of this sediment might form fossil fuels, such as coal, oil, or natural gas, which release carbon back into the atmosphere when the fuel is burned. When these organisms die, the carbon remains locked in their bodies. Decomposers are able to break down this material and release carbon back into the atmosphere and the cycle can begin again. Without decomposers, the carbon would remain locked in dead organisms and could only be released through combustion. At the end of the food chain, decomposers break down these molecules and return carbon and nitrogen to the soil and air. “Cover crops” like clover, beans and peas, planted after the main crop is harvested, help soils take in carbon year-round, and can be plowed under the ground as “green manure” that adds more carbon to the soil. Farmers can also do less intensive tilling.Soils play a key role in the carbon cycle by soaking up carbon from dead plant matter. Plants absorb CO2 from the atmosphere through photosynthesis and this is passed to the ground when dead roots and leaves decompose. Plants absorb CO2 from the atmosphere through the process of photosynthesis and use it to build their roots, stems or leaves. Carbon is mainly transferred into the soil through the release of organic compounds into the soil by plant roots or through the decay of plant material or soil organisms when they die. Through the process of photosynthesis, plants assimilate carbon and return some of it to the atmosphere through respiration. The carbon that remains as plant tissue is then consumed by animals or added to the soil as litter when plants die and decompose. Decaying organic matter produces H+ which is responsible for acidity. The carbon dioxide (CO2) produced by decaying organic matter reacts with water in the soil to form a weak acid called carbonic acid. This is the same acid that develops when CO2 in the atmosphere reacts with rain to form acid rain naturally. As soil organisms decompose organic matter, nutrients are converted into simpler, inorganic (mineral) forms that plants can easily use. This process, called mineralization, provides much of the nitrogen that plants need by converting it from organic forms. In general, pH values in the topsoil are lower because topsoil is rich in organic matter and the decomposition of organic matter will lead to the production of more organic acids, thus lowering pH of topsoil. Natural processes tend to acidify soils. Base-forming cations are leached from soils, carbonic acid is formed from carbon dioxide, plant roots excrete organic acids, and decomposition produces acidic products.
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In supercapacitor ,generally we use aqueous electrolyte and if we use 1.23 V above which water molecule splitting will happen.
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'there_will_not_be_water_molecule_splitting_in_Lead_acid_battery (LAB) as_electrolyte', because each one (half cell's) electrode should respect[1] this (1.23 V vs SHE[2], near 25oC) blocking-drawback[3,4] of the potential (vs SHE) .
However, an ideal aqueous electrolyte based supercapacitor (or an ideal LAB) might stretch/go up to: 2.46 V [= 1.23 V - (-1.23 V)], as a maximum cell voltage.
1. A reference electrode is an electrode that has a stable and well-known electrode potential. The overall chemical reaction taking place in a cell is made up of two independent half-reactions, which describe chemical changes at the two electrodes. https://en.wikipedia.org/wiki/Reference_electrode
2. In electrochemistry, the standard hydrogen electrode (abbreviated SHE), is a redox electrode which forms the basis of the thermodynamic scale of oxidation-reduction potentials. https://en.wikipedia.org/wiki/Standard_hydrogen_electrode
3. Chapter 1 - Introduction to battery technology https://www.sciencedirect.com/science/article/abs/pii/B9780443188626000021
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Hello
I want to purify indomethacin in ethanol but the problem is the formation of ester impurity due to esterification of acid part of indomethacin with ethanol. Is there any way to prevent estrification?
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thank you very much. I will try your suggestion.
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I found difficulty in synthesizing of 2-hydroxy-5-nitroisophthalaldehyde from p-nitrophenol by using duff reaction(HMTA, Trifloroacetic acid at 110 oC) having yield around 4-6 %
please provide ortho- diformylation of p-nitrophenol. Is there any other condition to apply for it?
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The synthesis of 2-hydroxy-5-nitroisophthalaldehyde can be achieved through several routes, but one of the most efficient and widely used methods involves the following steps:
Synthesis of 5-nitroisophthalic acid: This can be achieved by nitration of isophthalic acid using a mixture of nitric acid and sulfuric acid. The product is then purified by recrystallization.
Synthesis of 2-hydroxy-5-nitrobenzaldehyde: This can be achieved by the reaction of 5-nitroisophthalic acid with sodium hydroxide and sodium borohydride, followed by oxidation with hydrogen peroxide. The product is then purified by column chromatography.
Synthesis of 2-hydroxy-5-nitroisophthalaldehyde: This can be achieved by the reaction of 2-hydroxy-5-nitrobenzaldehyde with acetic anhydride, followed by hydrolysis with dilute hydrochloric acid. The product is then purified by recrystallization.
Overall, this route involves the nitration of isophthalic acid, followed by reduction, oxidation, and acetylation/hydrolysis to yield the final product, 2-hydroxy-5-nitroisophthalaldehyde.
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What is the most suitable solution for reducing pH of an solution which contains L- amino acid and peptide in a non-destructive way?
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You could add small aliquots of moderately concentrated HCl while continuously mixing. However, if you are concerned about overshooting to a very low pH value, an alternative would be to add a buffer pH,d to the lowest acceptable pH value. For example, acetate pH 5 Could be used. If you want the final pH actually to reach 5, then acetate pH 4.5 would be more efficient. There would be some natural resistance to overshooting pH 5 because of acetate‘s pKa value.
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Hello,
Is there a possible way to chemically etch/remove iron(ii, iii) oxide nanoparticles (25nm avg diameter)?
Thanks a lot in advance for all the answers!
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Joshua Depiver thanks for the answer! In fact, I want to etch the Fe3O4 nanoparticles coated on the SiO2 wafer, but dissolving them should simply work too. I already started experimentation using milder acids (e.g. citric acid). I will try also your suggestion with stronger acids to see if that works.
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The protocol we use is the two-step desolvation method using acidic pH, but it seems that instead of a powder we seem to get fibrous cotton-like material instead. Has anyone else experienced it and how were you able to solve the problem? Thank you very much!
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Synthesising gelatin nanoparticles often involves complex processes and steps, such as coacervation, emulsification, or solvent evaporation. Each method can be optimised based on various factors, including size distribution, yield, stability, drug loading, and encapsulation efficiency.
Here is an example of optimising the synthesis of gelatin nanoparticles via the two-step desolvation method, which is a popular method for making these nanoparticles:
1. Material Preparation:
You will need:
  • Type A or B Gelatin
  • Acetone or ethanol as a desolvating agent
  • Glutaraldehyde for cross-linking
  • pH buffer (usually around 2.5)
2. Process:
a. Dissolve gelatin in a buffer (usually at a concentration of 1-5% w/v).
b. Gradually add the desolvating agent to the gelatin solution under stirring. This process creates the nanoparticles.
c. Once the nanoparticles have formed, cross-link them with glutaraldehyde to make them more stable.
3. Optimisation:
To optimise the process, consider the following variables:
  • Gelatin Concentration: The concentration of gelatin used can affect the size and morphology of the nanoparticles. Lower concentrations tend to produce smaller particles.
  • Desolvation Agent: The choice and volume of desolvation agent used can significantly impact the particle size, distribution, and yield.
  • pH: The pH level during the desolvation process can affect the yield and size of the nanoparticles. It usually ranges from 2-5. A lower pH can result in larger particles.
  • Temperature: The temperature at which the desolvation process occurs can impact particle formation. Higher temperatures may lead to smaller particle sizes.
  • Stirring Rate: The rate of stirring during desolvation can impact particle size. A faster stirring rate typically leads to smaller particles.
  • Cross-linking: The concentration of glutaraldehyde and cross-linking time can influence the stability and drug-loading capacity of the particles. More cross-linking leads to more rigid, stable particles but could decrease drug loading.
Performing a systematic study that varies these parameters will help you determine the optimal conditions for your desired nanoparticle characteristics. Design of experiments (DoE) can be a helpful statistical technique to optimize this process.
Remember to verify your nanoparticles' size, shape, and surface charge using techniques such as dynamic light scattering (DLS), transmission electron microscopy (TEM), and zeta potential measurements. These techniques can also aid in the optimisation process.
Hope this helps.
Dr Joshua
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I tried to do molocular docking of okadiac acid ( 125 atom ) as ligand , Calcenurin A as macromolocule using PyrX but error is generated the same with Seamdoc ?
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If you could provide explicit details of the error generated or attach an image of the error message, the community might be able to help you. The information you gave is insufficient
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It seems that calcium dipicolinic acid (Ca-DPA) and dodecylamine are not soluble in water.
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I suggest using dodecylamine hydochloride and the sodium salt of dipicolinic acid. These should be more soluble than the free base and calcium salt, respectively.
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Is it possible to prepare polymethylmethacrylate from methacrylic acid and methanol monomers?
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To produce Methacrylic Acid is more complicated than to produce Methylmetacrylate. Have You any experience in Organic Chemistry?
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[Figure example missing right now.]
Are you looking for something like this?
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consist of picric acid ,formalin,glacial acetic cid
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It isa fixative for histology.
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Kindly clarify whether the Soil As extraction method using 0.5M NaHCO3 at pH 8.5 is suitable for acidic pH?
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When dealing with bioavailable arsenic (As) in acid soils, it is important to use extraction methods that are suitable for such conditions. Here are two commonly used extraction methods for bioavailable As in acid soils:
1. Mehlich-3 extraction: The Mehlich-3 method is widely used for extracting various nutrients and trace elements from acidic soils. It involves the use of a mixture of strong acids (such as hydrochloric acid and sulfuric acid) at a pH of approximately 2.5. This method is effective for extracting bioavailable As in acid soils and is commonly used in agricultural and environmental research.
2. Modified Morgan extraction: The Modified Morgan method is another commonly used extraction method for assessing bioavailable As in acid soils. It utilizes a mixture of weak acids, including acetic acid and ammonium nitrate, at a pH of approximately 4.8. This method is suitable for acidic pH and has been used extensively for extracting bioavailable As in both agricultural and contaminated soils.
Regarding the specific Soil As extraction method using 0.5M NaHCO3 at pH 8.5, it is not suitable for acidic pH conditions. Sodium bicarbonate (NaHCO3) at pH 8.5 is typically used to extract As in neutral to slightly alkaline soils. The higher pH helps in solubilizing As from solid phases. However, in acidic soils, the use of NaHCO3 at pH 8.5 may not be effective for extracting bioavailable As due to the low pH of the soil.
It is recommended to choose an extraction method that is appropriate for the specific pH conditions of the soil you are working with. The Mehlich-3 or Modified Morgan extraction methods mentioned above would be more suitable for acidic pH soils.
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i have done several samples using sebacyol chloride, however the TGA results not as wished. Any tips for the amount of monomers.
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Dear friend Akram Almahmodi
I understand that you are specifically looking for research papers on Nylon 6,10 synthesized from sebacic acid instead of sebacoyl chloride. It can sometimes be challenging to find literature on specific variations or modifications of materials, especially if they are less commonly studied. Here are a few suggestions to help you find relevant information:
1. Expand your search terms: Try using alternative keywords or variations in your search. Instead of searching for "Nylon 6,10," you can try searching for "polyamide 6,10," "PA 6,10," or "polyhexamethylene sebacamide." Additionally, include specific terms related to the synthesis method or starting materials, such as "sebacic acid," "polycondensation," or "polymerization."
2. Broaden your search scope: Instead of limiting your search to academic papers, consider looking for patents, conference proceedings, technical reports, or dissertations. These sources may contain valuable information on specific variations of Nylon 6,10.
3. Explore related literature: Although you may not find papers specifically on Nylon 6,10 synthesized from sebacic acid, you can look for studies on other polyamides or related materials that may provide insights into the synthesis, properties, or characterization techniques applicable to Nylon 6,10. This broader understanding can still be useful in your research.
4. Contact experts in the field: Reach out to researchers or experts in the area of polymer chemistry, specifically those working with polyamides or Nylon materials. They may be able to provide guidance, share unpublished information, or suggest alternative sources for your specific research interest.
5. Collaborate with peers: Engage with fellow researchers, attend conferences, or join online forums related to polymer chemistry. Networking with peers who have similar research interests can help you find relevant literature or exchange knowledge on specific variations of Nylon 6,10.
Remember, research is an iterative process, and sometimes finding specific information can be challenging. It may require a combination of creativity, persistence, and collaboration to address gaps in the literature.
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When we add organic matter in the form of biochar or compost to acidic soils, the organic materials decompose and release alkalinity such as carbonates, organic anions, inorganic anions, organic surface functional groups, and other organic compounds to the soil to neutralise acidity and raise soil pH. However, all the organic compounds generated from organic materials are not soluble in water to raise soil pH.
Which of these organic compounds or others not mentioned here, which are derived from organic materials, are soluble only in acids such as 0.5 M HCl and which of them are soluble in water as well?
I appreciate your time to answer this discussion question.
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Hi Salim,
Thank you for your answers.
Are the metal salts of organic molecules, carbonate, and ions that are soluble in water do not soluble in HCl?
Besides, are the nitrogen components only soluble in HCl?
I am trying to differentiate organic compounds that are soluble in HCl but not in water, and vice versa.
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I am using the SSX system for the selective extraction of transition metals. In the SSX system, one is an acidic extractant and another is a basic extractant. I need to maintain constant pH for extraction when I am going to test the performance of different ratios of these two extractants. I read some papers and found that they mentioned the study of different ratios of the extractants at particular pH but I didn't find any mentioned information about this that how can we maintain the pH. If anyone has any ideas please share.
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To adjust the equilibrium pH, you can add a buffering agent to the system. For example, if you need to maintain a pH of 3-4 for the acidic extractant, you can use a buffer such as acetate buffer, which has a pKa of around 4.76. Similarly, if you need to maintain a pH of 9-10 for the basic extractant, you can use a buffer such as carbonate-bicarbonate buffer, which has a pKa of around 10.33.
Here are the general steps to adjust the equilibrium pH using a buffer system:
Choose a buffer system with the desired pH range for your extraction experiment.
Prepare the buffer solution according to the protocol.
Adjust the pH of the buffer to the desired pH range using a pH meter.
Add the buffer solution to your extraction system in the desired concentration.
Mix the extraction system thoroughly to ensure uniform pH throughout the solution.
It's essential to validate the buffer's performance under the specific conditions of your experiment as the buffering capacity of the buffer may be affected by the presence of other components in the extraction system. Therefore, it's recommended to perform a blank control experiment to evaluate the buffer's buffering capacity and the potential interference with the analysis.