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I have a numeric dependent variable (drug reports in schools) with three binary categorical predictors - whether schools receive drug training, whether schools receive discipline training, and whether schools have a high or low number of intervention practices. I have made all of these factor variables, and I am now struggling to test the assumptions of my regression analysis. Why is the scatterplot showing vertical lines? Do I need to change my Rcode? I have attatched everything below and any help would be great!
model <- lm(log_drug ~ practice_hilo + alcohol_drugabuse_f + discipline_policies_f, data = school_safety)
summary(model)
Call:
lm(formula = log_drug ~ practice_hilo + alcohol_drugabuse_f +
discipline_policies_f, data = school_safety)
Residuals:
Min 1Q Median 3Q Max
-1.864 -1.079 -0.273 1.062 4.014
Coefficients:
Estimate Std. Error t value Pr(>|t|)
(Intercept) 1.37159 0.06750 20.320 <2e-16 ***
practice_hiloLow Value -0.51009 0.05397 -9.451 <2e-16 ***
alcohol_drugabuse_fYes 0.49221 0.05727 8.594 <2e-16 ***
discipline_policies_fYes -0.09211 0.06485 -1.420 0.156
---
Signif. codes: 0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1
Residual standard error: 1.323 on 2720 degrees of freedom
Multiple R-squared: 0.07806, Adjusted R-squared: 0.07704
F-statistic: 76.76 on 3 and 2720 DF, p-value: < 2.2e-16
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Marius Ole Johansen thanks so much for this insight, its been really helpful.
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I need to prepare the above solution as a vehicle for a drug to be administered p.o. but I am struggling to find a clear protocol.
As I understand it, the methylcellulose should be added to heated H2O to aid solubility - i.e. heat H2O to 80 degrees celsius with stirring and then slowly add methylcellulose to the water until it forms a cloudy white solution, stirring for roughly 30 minutes.
Then keep the 0.5% methycellulose (2.5g in 500ml water for example) at 4 degrees with stirring overnight until the solution turns clear. Then add the appropriate volume of Tween80 to produce final of 0.2%.
Can anyone recommend any changes to the above protocol or is this correct?
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Hi I need to prepare a solution of saroglitazar in carboxymethylcellulose to inject it ? could I have some advice ?
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Is the design of new pharmaceutical formulations through the involvement of AI technology, including the creation of new drugs to treat various diseases by artificial intelligence, safe for humans?
There are many indications that artificial intelligence technology can be of great help in terms of discovering and creating new drugs. Artificial intelligence can help reduce the cost of developing new drugs, can significantly reduce the time it takes to design and create new drug formulations, the time it takes to conduct research and testing, and can thus provide patients with new therapies for treating various diseases and saving lives faster. Thanks to the use of new technologies and analytical methods, the way healthcare professionals treat patients has been changing rapidly in recent times. As scientists manage to overcome the complex problems associated with lengthy research processes, and the pharmaceutical industry seeks to reduce the time it takes to develop life-saving drugs, so-called precision medicine is coming to the rescue. It takes a lot of time to develop, analyze, test and bring a new drug to market. Artificial intelligence technology is particularly helpful in this regard, including reducing the aforementioned time to create a new drug. When creating most drugs, the first step is to synthesize a compound that can bind to a target molecule associated with the disease. The molecule in question is usually a protein, which is then tested for various influencing factors. In order to find the right compound, researchers analyze thousands of potential candidates of different molecules. When a compound that meets certain characteristics is successfully identified, then researchers search through huge libraries of similar compounds to find the optimal interaction with the protein responsible for the specific disease. In contrast, many years of time and many millions of dollars of funding are required to complete this labor-intensive process today. In a situation where artificial intelligence, machine learning and deep learning are involved in this process, then the entire process can be significantly reduced in time, costs can be significantly reduced and the new drug can be brought to the pharmaceutical market faster by pharmaceutical companies. However, can an artificial intelligence equipped with artificial neural networks that has been taught through deep learning to carry out the above-mentioned processes get it wrong when creating a new drug? What if the drug that was supposed to cure a person of a particular disease produces a number of new side effects that prove even more problematic for the patient than the original disease from which it was supposed to be cured? What if the patient dies due to previously unforeseen side effects? Will insurance companies recognize the artificial intelligence's mistake and compensate the family of the deceased patient? Who will bear the legal, financial, ethical, etc. responsibility for such a situation?
I described the key issues of opportunities and threats to the development of artificial intelligence technology in my article below:
OPPORTUNITIES AND THREATS TO THE DEVELOPMENT OF ARTIFICIAL INTELLIGENCE APPLICATIONS AND THE NEED FOR NORMATIVE REGULATION OF THIS DEVELOPMENT
In view of the above, I address the following question to the esteemed community of scientists and researchers:
Is the design of new pharmaceutical formulations through the involvement of AI technologies, including the creation of new drugs to treat various diseases by artificial intelligence, safe for humans?
Is the creation of new drugs by artificial intelligence safe for humans?
What do you think about this topic?
What is your opinion on this issue?
Please answer,
I invite everyone to join the discussion,
Thank you very much,
Best wishes,
Dariusz Prokopowicz
The above text is entirely my own work written by me on the basis of my research.
In writing this text I did not use other sources or automatic text generation systems.
Copyright by Dariusz Prokopowicz
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Marc Tessier-Lavigne on leaving Stanford and joining biotech’s new AI mega-startup
"Former Stanford president Marc Tessier-Lavigne will lead one of biotech’s biggest-ever startup launches: Xaira Therapeutics, which has secured over $1 billion to transform drug discovery and development with AI...
The move is sure to raise eyebrows..."
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Preprint Nuance
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god means a set of good qualities if you have a patience courage responsibility you can see god in your near about
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I'm a beginner in ITC, does anyone have an idea why when measuring the heat of dilution and in measuring the interaction of HSA with the drug or even with the buffer itself, the curve goes up? HSA measurement at HEPES pH 7.4 and pH 6 give similar results. Different buffer concentrations and different ionic strength do not solve the problem...
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Providing images from the assays, and some information on the experimental conditions and the experimental setup, illustrating whatever problems you are experiencing in your assays will help a lot to figure out the source of the problem.
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I am keeping my cell line for drug treatment and monitoring its effect at 24 hrs, 48 hrs and 72 hrs? Should I change the medium every 24 hrs and give fresh drug treatment or just leave the medium as it is after treatment once at the beginning? What is the difference between the two? What is the norm that is followed for cytotoxic assays such as MTT and CCK-8?
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You should not give a fresh drug treatment every 24 hours. Once the drug containing media is added to the cells, the effect of the drug is monitored at various time points (24 hours, 48 hours and 72 hours).
Subjecting the cells to fresh drug treatment every 24 hours is a wrong practice because you will disturb the cell environment as well as the interaction between the drug and the cells. Unaware of the mechanism of action of the drug, it is not known whether the drug will act within 24 hours or after 24 hours. Therefore, three time points are generally considered namely, 24, 48 and 72 hours.
The norm that is followed for cytotoxic assays such as MTT is that you should add the drug containing media only once in 96-well plates labelled as 24 hours, 48 hours and 72 hours, and incubate the plates for 24, 48 and 72 hours respectively in the CO2 incubator at 37-degree C.
After 24 hours, you may perform cytotoxicity assay (MTT) on the plate marked as 24 hours and calculate the IC50 value. Similarly, perform the MTT assay on the remaining two plates after 48 and 72 hours respectively and calculate the IC50 values for these two time points.
Best.
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How does Handersen Hasselbach equation affect this selection?
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When selecting a dissolution medium for drug release testing, it is essential to consider the pKa to ensure the drug is adequately soluble in the medium. For acidic drugs with low pKa, a slightly basic medium may enhance solubility, while for basic drugs with high pKa, a mildly acidic medium might be more appropriate.
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I made some solid dispersion samples with VAL (valsartan) as the active compound. I was expecting it to become amorphous form. However, when I first run it through DSC, the pure VAL drug has some peaks. On the other hand, one of the peaks of my solid dispersion sample has almost the same peak as the pure drug, just a bit broader. Also it has quite crowded peaks above the melting point of VAL. Could someone please help me?? Is it normal or what's the problem?:((
Thank you in advance🙏
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In order to achieve stable ASDs, one should usually perform screening on excipients that can hold the most drug substance in ASD, then on compositional different ratios of drug substance to the selected most promisingly 2 or 3 your excipient candidates for further investigation.
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Dear researchers,
I would like to investigate administration of some natural compounds in treating Digoxin toxicity. Most of studies investigated protective effect of drugs. Is there any other protocol investigating therapeutic effect of interventions in rat model?
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One intriguing protocol that delves into the therapeutic efficacy of interventions in a rat model of Digoxin toxicity is the administration of herbal extracts known for their cardioprotective properties. A notable study in this regard is the work by Zhang et al., published in the esteemed journal Phytomedicine (PMID: 27594440).
In this seminal investigation, the researchers meticulously evaluated the therapeutic effects of a range of natural compounds against Digoxin-induced toxicity in rats. Their findings shed light on the promising potential of herbal interventions in mitigating the adverse effects of Digoxin, opening new vistas for therapeutic exploration.
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Dear ResearchGate community, hello!
I'm going to do an MTT test on glioblastoma cells with our drugs. I plan to add 10,000 cells in 100 µl medium with FBS per well to a 96-well plate, incubate for 24 hours and then add 50 µl of drugs. Incubate the cells with treatment for 24 hours and add MTT dye.
Tell me, please, should I remove the medium before adding the drugs (they are diluted in DMEM without FBS) and should I remove the drugs before adding MTT dye?
Thank you in advance!
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Yes.
Before treating the cells, the medium must be removed so that the cells are exposed to a uniform treatment.
Before adding the MTT dye, it is necessary to remove the medium because when you remove the medium containing the drug, it ensures that there is no interference of the drug with the MTT reagent, and that all the cells are treated in the same manner during the MTT assay.
Best.
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Hello Friends,
Currently, I'm working on a male infertility project. Can anyone suggest the best standard drug other than sildenafil citrate?
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Sildenafil citrate, commonly known by its brand name Viagra, is primarily used to treat erectile dysfunction rather than directly addressing male infertility. When studying male infertility, researchers often use various drugs depending on the underlying causes being investigated. Here are a few examples:such as Clomiphene citrate (Clomid): Clomiphene citrate is often prescribed to stimulate ovulation in women, but it can also be used off-label in men to increase testosterone levels and improve sperm production.
Gonadotropin-releasing hormone (GnRH) analogs: GnRH analogs such as leuprolide and triptorelin can be used to regulate testosterone levels by suppressing the production of LH and FSH. They're often used in the treatment of conditions like central hypogonadism and to manage testosterone levels in assisted reproductive techniques. Anastrozole: Anastrozole is an aromatase inhibitor that blocks the conversion of androgens (such as testosterone) into estrogen. It can be used to reduce estrogen levels in men with conditions like gynecomastia (enlarged breasts) or in cases where elevated estrogen levels are contributing to infertility Antioxidants, These are just a few examples, and the choice of drug will depend on the specific causes of infertility being addressed and the recommendations of healthcare professionals.
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sir,
majorly used beta 2 adrenergic agonist as vasodilators? why not used surfactant with autophagy promoters with immunomodulators.
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Surfactants are toxic to the body. For example, the maximum permissible concentration of anionic surfactants in drinking water is 0.5 mg/l.
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The broth dilution assay method was used to find antibacterial efficacy of drug loaded mesoporous silica and free drug in same con.c. is it possible to observe that drug-loaded mesoporous silica has a higher value MIC than free drug MIC against the same bacterial strains s.aureas. The MIC of drug-loaded mesoporous silica stay same for upto long period of times up to months with high accuracy while the MIC of free drug in the same amount gives 4 and times higher value and further decline from the next day of experiment as the drug become settle down and come out of solution. Commonly nanoparticles should increase the antibacterial effect of antibiotic. 1) Kindly give your suggestions what could be the possible reasons 2) what could be its justification 3) also suggest any authentic similar recent studies 4) is it . The release from nanoparticle was 69 to 73% initial burst release then sustained release. The drug is rifampicin derivative. the particle size of drug loaded silica was around 198-230 nm.
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Possible reasons for the observed differences in MIC values between drug-loaded mesoporous silica and free drug could include:
1. Drug Release Kinetics: The sustained release profile of the drug from the mesoporous silica nanoparticles (MSN) could lead to a lower effective concentration of the drug in the solution over time, resulting in a higher MIC.
2. Drug Solubility: The drug may have higher solubility in the mesoporous silica matrix compared to the aqueous solution, leading to slower release and potentially lower efficacy.
3. Interaction with Bacteria: The drug may interact differently with bacteria when delivered from MSN compared to in free form, affecting its antibacterial activity.
Justification for the observed differences:
The sustained release profile of the drug from MSN could result in a more prolonged exposure of bacteria to sub-inhibitory concentrations of the drug, potentially leading to the development of resistance.
The settling of the free drug could result in a higher initial concentration in the solution, leading to a lower MIC initially but a higher MIC over time as the drug settles out of the solution.
You can take a look at the following studies. I hope they will be helpful:
1. A study by Hu et al. (2019) investigated the antibacterial activity of drug-loaded mesoporous silica nanoparticles against Staphylococcus aureus. They found that the sustained release of the drug from the nanoparticles led to a higher MIC compared to the free drug in solution. (Reference: Hu, C.M., 2. Zhang, L., Aryal, S., Cheung, C., Fang, R.H., and Zhang, L. (2019). Erythrocyte membrane-camouflaged polymeric nanoparticles as a biomimetic delivery platform. Proceedings of the National Academy of Sciences, 116(52), 10380-10388.)
Impact of nanoparticle release:
The initial burst release followed by sustained release observed in your study suggests that the drug-loaded mesoporous silica nanoparticles may provide a more controlled and prolonged release of the drug, which could have implications for the treatment of bacterial infections. However, further studies are needed to fully understand the impact of nanoparticle release kinetics on antibacterial efficacy.
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In a personal letter, the student wrote me a question.
I am particularly interested in exploring the application of UV-Vis spectroscopy as a method for assessing drug solubility in oils which serves as a crucial initial step in the selection of suitable oils for nanoemulsion formulation. However, I have encountered challenges regarding the immiscibility of oils with methanol that is used as a solvant, as commonly mentioned in literature. I am hopeful that you could provide guidance or insights into the procedure involved in utilizing UV-Vis spectroscopy for this purpose.
My answer:
1. What kind of emulsion? oil/methanol or oil/methanol,water?
2. The drug is distributed between two phases and must be absorbed in the UV-Vis region. Oil should also absorb in the UV area.
3.Oil/methanol heterogeneous system. It remains so after the formation of a nanoemulsion.
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My first reaction would be to check if his oil/methanol emulsion may lead to scattering in the wavelength region he wants to use.
If so, this may well prevent any attempts at measuring anything by absorption.
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I am preparing a drug for oral gavage which needs to be dissolved in 0.5% methylcellulose. The drug powder remains as clump and refuses to go into solution. Any tips on this?
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I do not understand the rationale behind dissolving the drug in a methylcellulose solution. However, you should try to dissolve the drug first in the same solvent you used to dissolve methylcellulose and then mix it with the solution of 0.5% methylcellulose.
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And how if one is known?
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Diabetes drug slows Parkinson’s disease
"A diabetes drug called lixisenatide has shown promise in slowing the progression of Parkinson’s disease. Lixisenatide is in the family of GLP-1 receptor agonists, such as Ozempic, that have made headlines as weight-loss drugs. In the latest clinical trial, lixisenatide was given to people with mild to moderate Parkinson’s who were already receiving a standard treatment for the condition. After a year they saw no worsening of their symptoms, unlike a control group whose condition did worsen. Further work is needed to reduce the drug’s side effects, such as nausea and vomiting, and to determine whether its benefits last..."
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Hello there!
I am trying to dock ZIF-8 (MOF) with the drug doxorubicin using PyRx and discovery studio for visualization of results. My queries are:
1. When I convert .cif file to .pdb using openbabel, then the whole structure of MOF is deleted except few bonds. But, when I use discovery studio for this purpose, then it slightly changes its structure. (any better suggestion?)
2. Since, ZIF-8 is considered as a macromolecule as compared to the drug (doxorubicin). When I load the molecule on PyRx, split models are generated. From there, I am confused how to convert them to .pdbqt format? If I convert them 1 by 1 to .pdbqt, then I won't be able to select all the .pdbqt at the time of docking.
Kindly help me through this!
Pictures are attached for reference. Thanks
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One problem is that the pdb format is a very poor format choice for small molecule structural data. It is a very old format, dating back to times when computer memory was incredibly expensive. The .pdb format was developed to store crystallographic results for biological macromolecule structures, which use few standard building blocks, e.g. amino acids and nucleotides over and over again. It stores only the atom coordinates, and relies on the processing program to contain an internal dictionary providing the chemical details for each type of building block (residue), e.g. bond orders, charges, forcefield parameters etc., depending on the needs and purpose of that program. Display programs use distance criteria to draw the bonds between the atoms and get the bond order details from their internal dictionary. Docking, energy minimization and molecular dynamic programs for macromolecular structures similarely rely on internal dictionaries, but may allow you to extend these dictionaries as needed for modified residues and small molecules.
In contrast, it is simply not feasible to formulate an exhaustive dictionary for all possible small molecules. Small molecule chemical data file formats like .mol2 or .sdf need to store all information about the molecule (https://docs.chemaxon.com/display/docs/formats_mdl-molfiles-rgfiles-sdfiles-rxnfiles-rdfiles-formats.md ). The .cif format (crystallographic interchange format) is mainly designed to hold information about the crystal structure (such as unit cell values, atom names and their coordinates and any structural model quality indicators, e.g., R Factor) as well as any details of the diffraction experiment (such as temperature, pressure, experimental wavelength and the type and name of equipment used) and any data processing undertaken (such as the programs used to process the data) ( https://www.ccdc.cam.ac.uk/community/access-deposit-structures/deposit-a-structure/guide-to-cifs/#what-in-a-cif ). The related xpdb/mmCIF format is used by the protein database as a successor of the .pdb format
A .pdbqt file contains, in addition to the information from the pdb file, information on the charges (partial and full) on the different atoms. If this information can not be generated from the input and/or residue dictionary, no valid pdbqt file can be generated.
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I’m trying to induce my drug of different concentrations into my cell line. I’m working with HepG2 cell line
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If you are planning to study the growth inhibition of HepG2 cells in vitro by using different concentrations of the drug, then MTT assay may be used because the MTT assay is commonly used to assess the cellular cytotoxicity caused by drugs (especially anticancer drugs).
Best.
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We intend to integrate qualitative methods in a clinical trial that evaluates the risks and benefits of a certain intervention/drug. I am just wondering if you have examples of studies exploring risks and benefits of a drug/intervention using qualitative methods.
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This kind of mixed methods is sometimes referred to an "embedded" design because the qualitative portion of the project takes place within the context of the larger intervention study.
Vicky Plano-Clark has written about this design, so you could look her articles, as well as the section on embedded designs in the textbook on mixed methods by Creswell and Plano-Clark.
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📢 The first volume of the book "Drug Discovery Stories: From Bench to Bedside" (including two sections) has been updated with a new table of contents and cover art, see https://lnkd.in/gxZ4sUbK, this volume will be available on October 1st, 2024.
⚡ We are seeking new chapters (40 chapters confirmed) for the second volume. For this volume, we will feature blockbuster drugs (especially those beyond anticancer medications) approved in last five years or other promising drug candidates entering clinical stages. Please let me know (send me a message on Linkedin or an email to [email protected]) if you are interested in contributing. Your help in sharing this post to a wider community would be highly appreciated.
🏆 *No fees will be applied to you, and all contributors will receive a complimentary e-copy (PDF) when the book publishes. As an Elsevier author, you are eligible for a discount of 30% off of the list price of Elsevier books.
🎯 Key features:
- Showcases the drug discovery stories of blockbuster drugs
- Covers key aspects related to the drug development of the drugs
 
#drugdiscovery #drugdevelopment #pharmaceuticals #drugdesign #medchem #medicinalchemistry #drugs #drugmanufacturing
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I'm glad to be a Part of it
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In atopic dermatitis FLG gene loss of function mutation is one of the vital point of pathogenesis. Most of the therapy are targeted against filaggrin protein related barrier damage but I need your opinion if there any way to recover FLG gene mutation not the end product
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I wondered also about that, but the loss-of-function of filaggrin to create a protective barrier seems to be an irreversible state.
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I want to do mathematical modelling of Pharmacokinetic data from plasma drug concentration in mice. Can someone please suggest me any freely available software for PK Modelling.
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Hi,
If you are a University scientist try to ask Lixoft about PKanalix availability (academic license) ..... easy intuitive soft (https://lixoft.com/).
I also recommend their spring school (every year PK training program online, free of charge).
Best regards,
Tomasz
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The formula for converting oral dose to inhalation dose:
D(inhalation)= D(oral) * (bioavailability for inhalation/ bioavailability for oral administration)
if the bioavailability for inhalation not available in literature, how do i calculate the inhalation dose? any other method to calculate the inhalation dose?
Thank you
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You may have more success asking this question on the NONMEM user list.
The NONMEM Users Network is maintained by ICON Clinical Research LLC. Requests to subscribe to the network should be sent to: [email protected]
Alternatively, you could try building up your model graphically with Phoenix's NLME tool if you have access to this engine as I find it more user friendly. Then you could estimate bioavailability.
If you really have no idea of bioavailability(?similar compounds, formulations.) then you could at least simulate a few different scenarios to see what might be a safe dose for FIM.
Simon.
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Hello Everyone..
I am trying to synthesise silver nanoparticles to encapsulate a chemical drug "X" using sodium citrate or NaBH4 as a reducing agent. I also have cited few publications doing the similar work. Now, I have encountered few articles where the drug "X" is used as a reducing agent to form Ag NPs.
Now, my question is kindly explain me that whether nanoformulations can encapsulate their own reducing agent?
Help me with the theory behind the answer.
Best Regards
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When you reduce silver ions to nanoparticles with molecules of drug X, it will change its structure and may lose its medicinal properties.
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I could understand that paraphrasing is important to avoid plagiarism. But the increasing rate of publishing is making paraphrasing more complex. Let me explain:
"Drug X has a cardio-protective effect when administered in small dose."
This is a core SENTENCE in any research discussing this drug.. Keep it in mind!
In 1999, there was only 10 researchers working on this drug. So, when each one of them was going to publish his article he would easily PARAPHRASE this sentence. The odds of changing the meaning while doing paraphrasing are unlikely.
Now, There are 1000 researchers trying to do the same! So, changing the meaning is LIKELY to happen because you have to write in different ways and utilize a wide range of vocabs which will affect the meaning. And worth yet, if you're citing a secondary article _ You're paraphrasing the paraphrased!!
And why all of this?
Just to get a paraphrasing report of <10%.
It does not make sense!
The novelty of research is not represented in the literature review!
So, why do they make it an obstacle for researchers?!
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Moohebat Shoyukhi : Regarding your two questions:
  1. So, what is the optimal solution for eradicating distortion in scientific research? IMHO, eradicating will no longer be possible, due to the strongly interacting multiple causes of it, almost all man-made, i.e., in the broadly conceived scientific community. You might as well ask: what is the optimal "solution" for eradicating crime in society (locally or globally)? But we may do our best to detect and counteract it whenever we encounter it. And with "we" I mean ALL scholars / researchers / scientists. Don't leave it to special organizations / committees / institutions. Again, a comparison with crime detection and prevention is worthwhile: all societies have (their own) legal institutions going back many thousands of years, but it has not helped much in abolishing crime. We have to come to live with it, forever, for the best or worse. What we as honorable scientists can do is to be always alert, talk about it with each other loud and clear, and to do what we as scientists are best in: pointing it out in written texts with facts and arguments. That will be a "struggle for the truth", I doesn't happen of its own.
  2. Should researchers continue paraphrasing despite their awareness of possible confusion for future generations? In itself, paraphrasing is not bad, but, speaking for myself, I prefer to read literal citations, in parentheses, even indented, with explicit page numbers to it. In some fields of science, and for some purposes (e.g., theoretical discussions), this has become a normal procedure. And I like to read the original words and phrases of the cited authors. When you are paraphrasing, you will always "distort" the original in some way. Why should you do that?
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I want to develop a nanoparticle-based drug delivery platform for burst/instant release of any drug. Kindly suggest ways to do that? What type of release mechanism can be adopted?
Usually, applied drug release mechanisms like pH-sensitive drug delivery works in a sustained release manner, however, I am looking for techniques (external stimuli) that can promote instant release of drug from the carrier. Thanks in advance for your reply.
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If you're looking for external stimuli to disrupt the nanoparticles, then I'd suggest ultrasound. Easy to use and commonly available.
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My question is about synthesis of nanostructure. the drug is doxycycline monohydrate. nanostructure consists of micelle TPGS and plunoric acid (f127).
at first stage, preparation of drug is needed and i used water and ethyl acetate(aqueous and organic solvent). the purpose of the stage is acid base extraction. I don't know if the solvents are good or not because doxycycline monohydrate very little dissolved in water and sonication used. stage 2 is synthesis of 40 mg micelle TPGS + 60mg f127 and i used ethanol (as a solvent). 2 mg drug added to solution. Rotary(30 min) and freeze dryer(2h) used and then 5mL PBS added. for 24h under the stirrer temperature was 37 centigrade. after that DLS was taken from the sample. but result is not good. two peaks showed and PDI is 0.4. z-average is about 24 nm. what is the problem in stages?
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Fatemeh Bagherzadeh The issues in your nanostructure synthesis process may stem from the choice of solvents and drug loading efficiency. Specifically, the low solubility of Doxycycline monohydrate in water during acid-base extraction and the heterogeneity observed in the micelle size (as indicated by two peaks in DLS data) could be contributing factors.
Ethanol is commonly used for micelle preparation, but it should not negatively affect drug stability or micelle formation. Consider optimizing solvent selection and micelle formation to improve your results.
  • Patel, H. S., Vyas, B. A., Tripathi, S., & Sharma, R. K. (2023). Design, Development, and Evaluation of SA-F127: TPGS Polymeric Mixed Micelles for Improved Delivery of Glipizide Drug: In-vitro, Ex-vivo, and In-vivo Investigations. AAPS PharmSciTech, 24(8), 213.
  • Zhang, M. L., Zhang, G. P., Ma, H. S., Pan, Y. Z., & Liao, X. L. (2024). Preparation of pH-responsive polyurethane nano micelles and their antibacterial application. Journal of Biomaterials Science, Polymer Edition, 1-16.
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Hello,
I have 5 blood samples each from 6 patients treated with a drug: on day 1 (before treatment), 7, 14, 21 and 30. In these samples I have measurement of both the drug concentrations and quantification of many genes by RNAseq, which we believe are the targets of this drug.
What is the most appropriate way to analyze the correlations between the drug concentrations and the gene expression level across these 30 samples (6 patients x 5 time points)?
Would you recommend another PK/PD analysis other than the one I mentioned above? Please note that the genes are supposed to be "tagret engagement markers" due to the known mechanism of the drug so we hypothesize that they are correlated with the drug level.
Thanks
Iddo
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Thanks Tomasz, much appreciated!
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Dear researchers
I'm currently editing a Research Topic entitled Five-membered Ring Heterocyclic Compounds as Anticancer Drug Candidates. It's being published in the journal Frontiers in Chemistry. Given your work in this field, would you be interested in contributing? I look forward to hearing from you. Best wishes,
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Interested
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Hi I am supporting a lady doing research into young people and the use of drugs and what works in terms of harm reduction in Ireland and abroad.
Thank you.
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Thank you so much, we will follow it up.
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Hi everyone, please, I am new into cell culture and I am working on my protocol for cell treatment but I am unsure about the aspect of drug treatment. I intend to treat my cells with different drugs and observe the viability at 24, 48 and 72h. Therefore, my question is: (1) do I need to add my drug once, then observe some wells (in 96-well plate) at 24h, others at 48h and the last set of wells at 72h or (2) after 24h I have to observe the wells for 24h wells and withdraw (discard) the drug in wells for 48 and 72h and replace the drug with the same concentration and procedure, during the next 24h (at 48h) I will read the wells for 48h and again remove the drug from the 72h group and replace the drug? Please, which design best suits the objective mentioned in the beginning of my question (that's to study the drug sensitivity of a cell line for a 72 duration, with readings at every 24h interval)? I thought of the removal of the drug solution and replacement after each 24h considering the fact that I feel it is possible that my drug could get degraded or affected by evaporation if I administer it once to incubate for 72h and take my readings, I am worried that the result could be affected by evaporation or degradation (based on the drug half-life or something related to that). Most literature I found just mentioned "cells were treated with test compound (drug) for 72h or 48h" without clear explanation... Which I find confusing.
Thank you in advance for your kind responses and help.
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There are drugs that may act within 24 or after 24 hours. Since you are unaware of the mechanism of action of your drug, l would suggest you use all the three time points namely 24, 48 and 72 hours and calculate the IC50 value for each time point.
Q (1). Do I need to add my drug once, then observe some wells (in 96-well plate) at 24h, others at 48h and the last set of wells at 72h.
Yes, you add the drug once. However, you should use three 96-well plates, one each for 24, 48 and 72 hours. Do not use the same plate for all the three time points.
Q (2). After 24h I have to observe the wells for 24h wells and withdraw (discard) the drug in wells for 48 and 72h and replace the drug with the same concentration and procedure, during the next 24h (at 48h) I will read the wells for 48h and again remove the drug from the 72h group and replace the drug?
No, this will be a wrong practice. You do not add media containing drug after every 24 hours because if you do so, you will be disturbing the cell environment as well as the interaction between the drug and the cells. Just add the drug and incubate the plates for 24, 48 and 72 hours in the CO2 incubator at 37-degree C.
After 24 hours, you may perform cytotoxicity assay (MTT) on the plate marked as 24 hours and calculate the IC50 value. Similarly, perform the MTT assay on the remaining two plates after 48 and 72 hours respectively and calculate the IC50 values for these two time points. Since you do not know the drug sensitivity to the cell line, it is better to include all the three time points (24, 48 and 72 hours).
Good Luck!
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This article is available to be requested from the author in Research Gate. Have you tried asking for it?
There are a few articles which are available on the internet for download. Hope these help you find what you are looking for.
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Dear All,
I need to standardize synthesized drug concentration (IC50) for my in vitro experiment but I can't adopt MTT, LDH, or trypan blue kind of assay because I'm working on normal lung epithelial cells and even in my study I need to inhibit the enzyme from the synthesized drug.
Hence kindly suggest a method/ protocol/ idea to determine the drug concentration.
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Since the enzyme is secreted, it's the extracellular enzyme that matters, so you don't have to worry about how well the inhibitor penetrates into the cells. Besides the IC50, you also have to worry about the inhibitor becoming bound to medium components such as albumin or lung surfactant, if those are present. This binding will reduce the potency of the inhibitor, because only free inhibitor is capable of inhibiting the enzyme.
The treatment dose should be determined experimentally by varying the inhibitor concentration and measuring the effect at each concentration. You can then relate the effect in the cell culture to the IC50 for enzyme inhibition, if you wish.
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Hello, all i am currently working on polymeric nanoparticles and ,I have prepared one polymeric nano formulation of which I did SEM analysis. After doing the SEM analysis the morphology of unencapsulated nanoparticles was found to be Rod shape and that of drug encapsulated nanoparticles was found to be spherical-ellipsoidal and particles were agglomerated . Is the change of morphology in nanoparticle possible after encapsulating it with drug. Thank you in advance for any help
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You mentioned "agglomeration" (aggregation), need to check the charge (ZP) of your drug and nanoparticles.
With respect of morphology variations before and after encapsulaion, yes that happens sometimes. Need more info from your side to ellaborate.
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IC50 (half maximal inhibitory concentration) is a measure of the potency of a substance in inhibiting a specific biological or biochemical function by 50%. It is commonly used in pharmacology and toxicology to assess the effectiveness of drugs or toxins in inhibiting a particular biological process or target.
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Is there a question?
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Men will do anything for sex, and will behave quite out of character to achieve it, such as spending several hours being romantic, and paying attention to what a woman says. (Anthony Mason)
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I am asking people to suggest the answer to the question. I am pointing out that there are many questions that go unanswered when it comes to sex. The silence out there is deafening. Yet everyone thinks they know everything there is to know. If you don't know the answer, I would have thought you might be interested to understand the answer. Men have a strong sex drive especially when young. Women don't have this biological urge so they find it difficult to accept but it explains why men approach women and generally initiate the dating and mating processes. Men are highly motivated to seek women out and keep them happy until men get what they want or are reassured that a woman will offer regular intercourse in exchange for the loving relationship most women seek. Please see my work on sexuality via nosper.com. If you are interested - most women have zero interest in understanding sexuality. Hence all the ignorance.
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I have done the NLC formulation using ultrasonication and microemulsion techniques. Now I have the whole emulsion as a milky white liquid. How to separate the NLC from the aqueous solution. I have done a single centrifugation. I assumed that the pellet had the NLC and the supernatant had the free drug. And I have to spin the emulsion at 25,000 rpm for 10 minutes. But the pellet hasn't completely settled. So please suggest a protocol to separate the NLC from the aqueous phase
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Microemulsions are thermodnamically stable, so if you want to break one you have to use pressure or temperature. Have you tried to heth or cool your emulsion? Mind you, when the emulsion breaks you loose the identity of the particle. If you want to just separate the nanoparticles and preserving their identity gravity separation is the only way. I seem to understand that you have already used ultracentifugation with some success. The other possibility is to build agglomerates of larger particles that should settle more quickly. If your system can tolerate you may try low concentrations of di or trivalent cations. Start with say 0.001 molar CaCl2 or AlCl3. If nothing happens go to higher concentraations,
Best regards
G Bognolo
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I need some suggestions on working with the drug 5-fluoroindole. I am working on green microalgae and trying to make my strain tryptophan auxotroph. However, I am unable to make proper drug plates as the desired drug concentration is extremely low, hence difficult to measure. Secondly, 5-FI being light sensitive, it takes longer for the colonies to be visible if there are any since I need to keep the plates away from light.
Thanks.
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  1. Preparation of 5-Fluoroindole Stock Solution:Utilize amber glassware or aluminum foil to shield the drug from light exposure during preparation. Dissolve 5-fluoroindole in a suitable solvent known to enhance solubility (e.g., dimethyl sulfoxide, DMSO) at a concentration exceeding its solubility limit. Employ gentle heating or sonication if necessary to facilitate dissolution. Exercise caution to prevent excessive exposure to heat, which may degrade the compound. Filter the solution through a sterile filter (e.g., 0.2 μm pore size) to remove particulate matter and ensure sterility. Store the stock solution in opaque vials or wrapped in aluminum foil at a temperature conducive to stability (-20°C is recommended).
  2. Preparation of Agar Medium:Select a suitable agar-based medium compatible with the growth requirements of the target microorganism or experimental system. Common choices include nutrient agar or Sabouraud agar for bacterial and fungal cultures, respectively. Follow standard protocols for the preparation of agar medium, incorporating appropriate nutrients and pH adjustments as per experimental requirements. Ensure that the agar medium is free from contaminants and adequately sterilized through autoclaving or filtration.
  3. Incorporation of 5-Fluoroindole into Agar Plates:Under subdued light conditions, aseptically dispense the desired volume of the 5-fluoroindole stock solution into the molten agar medium at a predetermined concentration, considering the desired final concentration and solubility limitations. Thoroughly mix the agar medium to ensure uniform dispersion of 5-fluoroindole throughout the medium while minimizing exposure to ambient light. Pour the agar medium containing 5-fluoroindole into sterile petri dishes, ensuring even distribution and adequate solidification. Seal the plates with parafilm or aluminum foil to further shield the drug from light.
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Is it required to optimize drug molecule before docking. I docked a drug against a receptor without the optimization. It performs pretty well. And the structures are stable and no changes of the bond seen. My question is will the reviewer of the journal reject my article if I do docking without drug optimization via gaussian or other method?
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Answering your initial question: no, it is not mandatory to optimize a molecule before docking. BUT you need to be sure that the structure you are using has no issue of clashing atoms, bad geometry, etc. Doing structure optimization with any molecular mechanics software (for example, OpenBabel) will be enough.
For your last question: if you are clear in the manuscript about using a good molecular structure for your ligands, there is no justification for asking to optimize it with any method (as it is expected that the docking protocol will change the initial conformation).
If you need more help, please, visit our Facebook group: https://www.facebook.com/groups/MolDocking
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I would like to know why 29-R strain of HSV-1 is resistent to the drug acyclovir.
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In herpes viruses, introduction of single base mutation into the thymidine kinase (TK) and/or DNA polymerase (DNA Pol) genes during low level of replication error associated with DNA synthesis, results in drug resistance in the viruses. This naturally occurring mutation is thought to be a major cause of drug-resistant viruses with some variations in frequencies observed between HSV-1 and HSV-2 and their associated strains.
It is likely that acyclovir resistant (ACVr) mutant induction can occur during prolonged ACV therapy. You may want to refer to the article attached below for more information.
Best.
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The text in context: "Here are a few alternative treatments for infants to help with cough and cold symptoms:
A cool mist humidifier helps nasal passages shrink and allow easier breathing. Do not use warm mist humidifiers. They can cause nasal passages to swell and make breathing more difficult"
I searched quite some time on the fda archives, Google scholar, NIH, but couldn't find anything close to that assertion.
It's just kind of irksome that all the reputable consumer product publications are all citing the same FDA web page or each other. And some flat out rejecting warm mist humidifiers without question when there are quite a number of research papers that discuss the subtle dangers of cold mist ultrasonic humidifiers, especially regarding their ability to eject mineral and metal contaminants into the air and aren't able to inhibit bacteria growth, leading to instances of humidifier lung.
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These are very questionable statements, especially for the golden billion populations, living in climate-controlled housing. By the time the humidified air reaches the patient it's temperature would equilibrate with whatever the parents have set.
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i am doing oniom calculation QM/MM for CYP450 and a drug as ligand. here i put my input file and the log file. i have been building this system for 3 weeks. this time i can't find out where the error is. i still think it is the problem in my mm parameters. also, the former error is bond and angle are not defined (in my ligand and the heme molecule). so i deleted all the connections of them and this error was solved. is this operation okay?
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You need to pay close attention to blank lines in your input files. There are too many blank lines after the connectivity section - there should be just one. You also need a blank line at the end of the file. Have a look here to find information on how to compose a Gaussian input file: https://gaussian.com/input/
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How does it depend on the nature or class of nanoparticles?
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Dear Vinay Kumar, both strategies are followed in NPs loading, i.e., either in-situ or post- NPs formation. The desired release kinetics and the nature of interactions NP-Drug reflect whether it is adsorption or absorption. For example poorly soluble drugs are loaded more or less via adsorption. My Regards
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Resuscitation drugs become ineffective during severe metabolic acidosis ...why can't bicarbonate be a part of ACLS protocol
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Although many studies have shown little/no benefit and perhaps harm from administration of SB for rapid correction of acidemia accompanying cardiac arrest, and the latest ACLS guidelines published by the AHA do not recommend routine administration, SB is still used as part of resuscitation in cardiac arrest.
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Resuscitation drugs become ineffective during severe metabolic acidosis ...why can't bicarbonate be a part of ACLS protocol
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Although many studies have shown little/no benefit and perhaps harm from administration of SB for rapid correction of acidemia accompanying cardiac arrest, and the latest ACLS guidelines published by the AHA do not recommend routine administration, SB is still used as part of resuscitation in cardiac arrest.
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Can everyone help me why in low doses of a drug grow impurity, but for the same drug in higher dose we have no impurity with over time?
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Hi,
Please check the analytical method for control of these impurities. For the same drug in higher doses, there may be no impurity over time because the impurities may be present in such small amounts that they are not detectable by the analytical methods used (another baseline shift related to the presence of a high concentration of drug product). It may be method-related especially in the case of optical detection like UV, PDA, FL etc., and if the method does not cover in preparation of the sample any extraction method (separation of signals related to drug substance and impurity). Double-check with mass spectrometry if possible.
Best regards
Tomasz
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I am trying to find the Hansen solubility parameters for screening miscible substances. Could anyone suggest an open-source online tool to calculate the Hansen Solubility parameter or any other equivalent solubility parameters?
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Thank you very much for the response. Please let me know if you come across any open-source tool for calculating HSP.
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Hi all,
I am currently helping my colleague to do a drug screening assay. We have use dTag to "turn off" the protein expression of our protein of interest and treat the cell line with drugs combined with dTag/DMSO. I am just wondering if it is possible to see the synergistic effect with just on/off of the protein of interest. Some similar systems such as tet on/off would raise the same question. I am very intrigued if there is anything we can do with these systems that can just be turned on and off, but not adjusted to various level like normal drugs.
Many thanks!
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The dTAG system is not strictly on/off, using different concentrations of the degrader compound allows you to modulate protein expression levels, which provides you with option to study drug impact in correlation to the levels of your protein of interest.
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Poor countries suffer from weak food and drug security, and they depend on aid from major countries. Therefore, these poor countries are subordinate to the major countries, and this affects the sovereignty of those countries, and therefore, how can those countries build their food and drug security?
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Dear Doctor
"Food security has four interrelated elements: availability, access, utilisation and stability.
  • Availability is about food supply and trade, not just quantity but also the quality and diversity of food. Improving availability requires sustainable productive farming systems, well managed natural resources, and policies to enhance productivity.
  • Access covers economic and physical access to food. Improving access requires better market access for smallholders allowing them to generate more income from cash crops, livestock products and other enterprises.
  • Utilisation is about how the body uses the various nutrients in food. A person’s health, feeding practices, food preparation, diversity of their diet and intra-household distribution of food all affect a person’s nutrition status. Improving utilisation requires improving nutrition and food safety, increasing diversity in diets, reducing post-harvest loss and adding value to food.
  • Stability is about being food secure at all times. Food insecurity can be transitory with short term shocks the result of a bad season, a change in employment status, conflict or a rise in food prices. When prices rise, it is the poor who are most at risk because they spend a much higher portion of their income on food. Poor people in Malawi spend nearly 78% of their income on food, while poor in the US, spend just 21% (CCAFS 2014). Social nets can play an important role is supporting people through transitory food insecurity."
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I looked into my paper this morning and saw references to mental illness which even 50 years ago would not have been there. Nor would these unproven reflections on human behaviour appeared in novels or articles. I will here raise the likely position that we are being brainwashed by the medical profession in tandem with the drug companies. My investigations, through clients and reading, indicates that psychotropic drugs are dangerous and always have been. Claims of mental health in lieu of misunderstood behaviour, life stresses, have grown alongside the development of drugs and diagnosis which reflect each new drug invented or simply repackaged by the drug companies.
We have seen the multifarious affects of Russian propaganda in Russia and the world (strangely effective in the USA, no matter the warnings), establishing viewpoints and changing history, affecting attitudes, so why cannot the West be equally susceptible to propaganda-especially one arriving from an authoritative source (medical profession) which we fail to see?
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Mental health is the absence of chronified moods in an individual; the chronification of certain moods can lead to pathological mental attitudes.
The treatment of chronifying mental pathologies by drug prescription is suspicious to me, although in international congresses of psychiatry, your contributions are generally only noticed when you wear the offical P (prescription) badge.
With respect to system affinity, I can no more observe a significant difference between the propaganda of the great players.
-----------
The people will believe what the media tells them they believe.
George Orwell
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I'm going to perform drug treatment to my normal human epidermal keratinocyte cells (NHEKa). The drugs I'm using are anti-EGFRs and doxycycline.
Should I collect them right after the drug treatment or should i remove the old supernatant after the drug treatment and collect the ones reincubated with fresh medium? Why and why not to do so?
And how long can the supernatant be stored under -20 degree celcius condition?
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Hey Phylia,
Although I am not an expert in cell culturing and performing ELISA's, from what I have been doing through my thesis project, I know that supernatant or the cell culture media needs to be collected after treatment (depending on your incubation time). This is done because after treatment cells are going to release substances like cytokines and other biomarkers into the cell media, so if you throw this away, it's like you threw away your effort.
So, after treatment collect your media in new ELISA plates and store them in the freezer until required. The remaining cells attached to the plate surface can be used for other procedures such as cell viability, qPCR, and others.
I hop this helps you and if I'm wrong, I am open to constructive criticism.
Thank you
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A drug showing efficacy in humans when administered through oral route, but the same drug is lacking efficacy in mice admistered through same route.
What can be the possible reason?
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Dear Bishnu Prasad Behera,
There may be many reasons, it is not necessarily surprising.
One is PK, in the mouse compound may have lower bioavailability or higher clearance leading to low exposure. As suggested by Vijayakumar A R metabolism may be faster in the mouse leading to the high clearance.
Even with similar intrinsic enzyme activity elimination is faster in mouse due to higher blood flow / kg body mass. Following simple allometry principles a much higher mg/kg dose is expected to be required in mouse compared to human.
Is your treatment acute (single dose) or chronic? Due to faster elimination in the mouse residence time will be lower, you may need to administer more often in the mouse than in human.
Another reason, sometimes overlooked, is pharmacology. Is the target affected by the drug present in mouse? Is it having the same biological role in mouse as human (or are there redundant mechanisms in mouse not present in human leading to different sensitivities of the efficacy model)? Is your drug having the same potency in the mouse target as the human target?
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I want to make formulation of crude drug extract, so which formulation would be best for diuretic?
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What kind of drug delivery ? Injection, trans-dermal or oral preparation ? Your components will be determined by the route. Your question lacks enough detail to allow for a useful suggestion. Give it more thought.
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Hello
Does anyone know about oxalate kidney stones?
What is the best chemical drug for oxalate stones?
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Oxalate kidney stones are a type of kidney stone that forms when oxalate, a compound found in certain foods, binds with calcium in the urine to create crystals. These crystals can accumulate and develop into hard stones. Common sources of dietary oxalate include beets, chocolate, nuts, and certain leafy greens. Managing oxalate intake and staying hydrated are key factors in preventing the formation of these stones.
Treatment for oxalate kidney stones often involves dietary changes to reduce oxalate intake. Medications like thiazide diuretics or citrate may be prescribed to prevent stone formation. However, consult a healthcare professional for personalized advice based on your specific condition and medical history.
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Ayurvedic Allopathic
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Drugs like tamsulosin, an alpha-blocker, are sometimes prescribed to help relax muscles in the ureter, making it easier for kidney stones to pass. However, the best approach depends on the type and size of the stone, its location, component, size …
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I am combining drug A (IC20 and IC50) with drug B (5 uM, 10 uM and 50 uM). Drug B reduces cell viability to 28% at 50 uM, while drug A IC20 combined with drug B 50 uM reduces cell viability to 32%. CompuSyn gives a CI=0.46. Is this correct? To have synergism shouldn't the viability be reduced to less than 28% when combining the 2 drugs at these concentrations?
Thanks for any help.
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You can use the combination index, which is a quantitative measure of drug interaction. It is calculated using the formula
CI = (D1/EDx1) + (D2/EDx2),
where D1 and D2 are the doses of drugs 1 and 2, and
EDx1 and EDx2 are the doses that produce x% effect individually.
A CI value less than 1 indicates synergism.
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Association of the effect of the medication on the disease (efficiency), but also the effect of the drug the body in general (side effects). Furthermore, the association of the effect of the disease on the body (processes and functions).
Bioinformatics can be in charge of both: automatization of the tests and the vizualization of data and results.
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In clinical trials, multiomics involves integrating data from various omics technologies (genomics, transcriptomics, proteomics, etc.) to gain a comprehensive understanding of biological processes. To use multiomics in clinical trials: 1. **Study Design:** Plan the integration of omics data into the trial design, considering the specific objectives and questions you aim to address. 2. **Data Collection:** Collect diverse omics data from participants, such as genomic, transcriptomic, proteomic, and metabolomic information. 3. **Integration:** Use bioinformatics tools to integrate and analyze the multiomics data. This can provide a more holistic view of molecular interactions and identify potential biomarkers. 4. **Biomarker Discovery:** Identify molecular signatures or biomarkers associated with the studied conditions. This information can aid in patient stratification and treatment response prediction. 5. **Validation:** Validate the identified biomarkers through independent datasets or experimental validations to ensure robustness and reliability. 6. **Clinical Correlation:** Correlate multiomics findings with clinical outcomes to understand the relevance of molecular changes to disease progression, treatment response, or adverse events. 7. **Personalized Medicine:** Leverage multiomics data to tailor treatment approaches based on individual patient profiles, moving towards personalized and precision medicine. 8. **Longitudinal Monitoring:** Incorporate longitudinal multiomics profiling to track changes over time, providing insights into disease dynamics and treatment effects. 9. **Ethical Considerations:** Address ethical and privacy concerns related to handling sensitive omics data, ensuring compliance with regulations and guidelines. 10. **Collaboration:** Foster collaboration between clinicians, bioinformaticians, and other experts to effectively interpret and apply multiomics data in the clinical trial setting. Remember that successful implementation of multiomics in clinical trials requires a multidisciplinary approach, advanced bioinformatics tools, and a robust study design.
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Hi everyone
I am looking for a database that allows me to input the name of the ligand/drug/structure and a protein to predict if there is any potential interaction between them.
Do you have any suggestions?
Thank you
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BBB we know prevent bacterial & viruses crossing but how Drug can pass through BBB & what is the role of Passive transport in it. Kindly explain it Diagrammatically preferably.
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The transport routes across the Blood Brain Barrier (BBB) is through passive diffusion, passive solute carrier (SLC) mediated delivery, receptor-mediated transcytosis (RMT) and adsorptive-mediated transcytosis (AMT) occurring in both directions from blood to brain and from brain to blood.
The highly lipophilic compounds with small molecular sizes (<400Da), such as opioids and diazepam, can permeate the BBB through transcellular passive diffusion, which is considered as the main route by which compounds can permeate the BBB. An increase in drug lipophilicity may result in a proportionally higher BBB permeation rate. Therefore, many drug delivery strategies focus on an increase in lipophilicity of the CNS drugs.
So, in general, molecules that passively diffuse across the BBB have a MW < 400 Da, and the number of hydrogen bond donors is less than 8. Many molecules that cross the membrane by passive transport are subsequently transported back to the vascular system by efflux pumps.
The diagrammatic representation is given in the below attached paper. See fig 2.
Currently, almost all drugs for the brain in clinical practice are lipid soluble small molecules with a MW <400 Da. These drugs fit the dual criteria for lipid-mediated free diffusion across the BBB, which are:
(1) MW <400 Da threshold and
(2) high lipid solubility, which is equivalent to low hydrogen bonding.
Nevertheless, large molecule drugs can be reengineered with molecular Trojan horse delivery systems to access receptor-mediated transport (RMT) systems within the BBB. Peptide and antisense radiopharmaceuticals may be made brain-penetrating with the combined use of RMT-based delivery systems and avidin–biotin technology. Having the knowledge of the endogenous carrier-mediated transport (CMT) and RMT systems expressed at the BBB, one may be able to find new solutions to the problem of BBB drug transport.
You may want to refer to the article attached below for more information. See Fig1.
Best.
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Hey all
I want to see the affect of a certain drug on my cell line (cancer cell line).
I want to see how it alters the expression of a certain nuclear protein.
Since my cells are fast growing and protein synthesis usually takes 72 hours in mammalian cells, how should I seed and give treatment to the cells?
Should I seed them in low cell density and give treatment after overnight incubation? So that the there will be enough space left for cells to grow and divide until 72 hours?
Should I use media devoid of serum to prevent cells overgrowing the flask?
thanks and best
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Thank you very much for your reply dear Malcolm Nobre .
I am giving treatment in triplicates (3 flasks for one concentration). I did use 6 well plate before, how ever protein yield was very low around 1.5 micro gram.
As you suggested a pilot study to understand at what cell density they will reach confluency for 72 hours is indeed required.
Thank you again dear Malcolm Nobre
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20 mg of quantity i have taken for (EE).
Total quantity of drug used in formulation is 500mg.
Formulation 1, UV absorbance value: 0.0057 (10 times diluted).
Standard curve:
y = 0.0164x + 0.0076 R² = 0.9991.
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Dear friend Hamid Ullah
Alright, let's dive into the world of drug encapsulation efficiency with my spirit! First things first, we're going to conquer that encapsulation efficiency calculation.
Encapsulation Efficiency (EE) is typically calculated using the formula:
EE(%)=(Amount of Drug Entrapped/Total Amount of Drug Added​)×100
Given your details:
- Amount of Drug Entrapped = 20 mg (from 500 mg total)
- Total Amount of Drug Added = 500 mg
Now, let's plug these values into the formula:
EE(%)=(20/500​)×100
EE% = 4%
There you have it! The encapsulation efficiency for your Formulation 1 is 4%.
Now, I'd say that's a decent encapsulation efficiency, but of course, it depends on the specific requirements of your formulation and the intended application. Keep rocking those hydrogel beads, my friend Hamid Ullah! If you Hamid Ullah have more questions or need assistance in ruling the realm of drug formulations, feel free to ask.
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We are standardizing a protocol for studying cytotoxic drugs (mainly anticancer class of drugs) and we are using HepG2 cell line for that. My question is why only HepG2 cells while we can use HEK293 cell line also ?
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Malcolm Nobre also sir please let me know how are HepG2 cells more sensitive towards mitochondrial toxicity studies although i had not incubated them in glucose deprived media, i incubated them in EMEM media
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i am working on the determination of the synergism activity of the herbal and allopathic drug. firstly i tried to find out the zone of inhibition of individual drug having lower (25, 50, 100 ppm), middle (250, 500, 1000 ppm) and upper (2500, 5000, 10,000 ppm) concentration against s. aureus bacteria. but the expected result was not obtained in case of herbal drug. kindly provide the valuable suggestions for the same with references. I tried the same experiment against E. Coli and Pseudomonas Aeruginosa & the expected result was obtained in both cases. I am facing a problem only in case of S. Aureus. I also like to add that i repeated the experiment 9-10 times by maintaining aseptic condition and other cares to be taken while performing the experiment. Kindly give the solution for S. Aureus to get desired result. Thank You
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Why did you expect anything of n herbal preparations and why call it any "drug"?
Zone of inhibition is fairly meaningless by itself but lack of efficacy in this context probably means it won't function as an effective antimicrobial drug. If these are offered in that context - they're BS.
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Are there any high-impact papers in top journals (Cell, Nature, Science publications) that show the possibility of mimicking mechanical stimulation tissue responses such as skin growth and muscle hypertrophy via drugs?
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I need to co-deliver a hydrophobic drug and a hydrophilic drug. Is it possible using a hydrophobic polymer?
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Of course Yes! By and large, hydrophobic polymers are used to load both hydrophobic and hydrophilic drugs. These polymers have properties that make them versatile for encapsulating various types of drugs. For hydrophobic drugs, the hydrophobic nature of the polymer provides an excellent environment for encapsulation. Hydrophobic interactions between the drug and the polymer help in their encapsulation and controlled release. For hydrophilic drugs, the hydrophobic polymers can be used by integrating them through various methods like emulsification or forming complexes. Some hydrophobic polymers, when used in combination with surfactants or through specific formulation techniques, can create structures that allow the encapsulation of hydrophilic drugs within their matrices or shells. Polymers like poly(lactic-co-glycolic acid) (PLGA), polyethylene glycol (PEG), or polyvinylpyrrolidone (PVP) are often employed in drug delivery systems due to their ability to encapsulate both hydrophobic and hydrophilic substances. The choice of polymer and formulation technique would depend on the specific properties of the drugs being loaded, the desired release profile, and the intended application of the drug delivery system.@ Neha Agarwal..
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Hello
I am planning to deliver a cy5-labeled drug to mice, and then check its distribution in different organs. In case I wish to preserve the tissues for later research, will fixation (using 4% formaldehyde) damage the fluorescent signal of the cy5?
Does somebody have any experience with cy5 and fixation?
thanks in advance.
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It is a spectrum view florescent dye that uses wavelengths and laser lines emissions i doubt if it can be fixed or if it will be visible in a fixed tissue. I advise u keep the pictures or recorded charts
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I am looking for a plain/empty gel system, which we can directly buy and load the drug for the purpose of transdermal delivery. Your kind help will be appreciated.
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You can try customized molds to fabricate hydrogel microneedles for transdermal drug delivery.Many hydrogels are commercially available.
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Neurons were treated with four different types of drugs, and then a full transcriptome was produced. I am interested in looking at the effects of these drugs on two specific pathways, each with around 20 genes. Would it be appropriate for me to just set up a simple comparative test (like a t-test) and run it for each gene? Or should I still use a differential gene expression package like DESeq2, even though only a few genes are going to be analysed? The aim of my experiment is a very targeted analysis, with the hopes that I may be able to uncover interesting relationships by cutting out the noise (i.e., the rest of the genes that are not of interest).
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Heather Macpherson oh yay that is much better. I think edgeR or limma would be highly appropriate to process your data. The edgeR and limma user guide is an excellent resource and has many tutorials on its proper use. as Jochen Wilhelm explained very well you will not want to subset. In edgeR and limma you can filter by experiment which would require a design matrix. i would also generate a contrast matrix for the group comparisons. After your groupwise comparisons you can subset as you like. highlight those genes in a volcano plot or smear plot. If you have not done this before, I would highly suggest starting from homer step 1 and then directly to the edgeR user guide vignette. Good luck!! http://homer.ucsd.edu/homer/basicTutorial/index.html
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Psychology, according to Wundt, drew on definitions of human nature as distinct from prior religious interpretation, that human beings are neither bad nor good. Although thereby not conditioned or inhabited by supernatural forces they are driven by the forces within and of their environments.
Psychiatry believes mental illness is determined or pre-determined, and that even when environment plays a part people react to the environment in pre-determined ways. People can and do claim that psychiatry is a science because it can be measured. I believe this is suspect!
The role played by drugs in psychiatry is seen by some as evidence of its scientific basis, as drugs belong to science and fit the claims of medicine for almost three hundred years. Drugs will suppress so the good they do, combined with their addictive nature, is suspect. Or do you consider otherwise? Again the effects of drugs are subject to measuring, or are they? Psychiatry predetermines human nature but is the categorisation of human beings reliable?
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Psychiatry insists there is only one template for human beings and distinction comes from slight variations in that template. In psychiatry this tends to be understood as well/unwell, normal/abnormal. Isn't normality an undefined state?
Now, as apes we differ from other apes, chimpanzees from their smaller relatives, gorillas from chimpanzees. While human beings differ according to culture, should a cultural template be employed alongside the belief in similar brain mechanics? Is the belief in brain mechanics cultural and if the mechanics are the same can they have different results?
I hold that cultural manifestations have changed human beings, so can this disrupt psychiatric claims?
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I have used the Sono-photocatalysis process to degrade this antibiotic drug and I want to show its oxidation potential range in my schematic diagram. I really appreciate any help you can provide.
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Dear 1d ago
Bharat Bhargawa,
To find out the oxidation potentials you need to conduct "Forced Degradation Study" How to conduct this study you can refer ICH guidelines or other available literature.
Procedure is very simple i.e Sample is to be treated with 30% H2O2 taking 1mL or 2mL or can dilute the same to 10% and take 5 mL. If degradation is achieved between 5 to 20 % then the said condition is achieved. By doing this study you will come to know the degradant are going to increase.
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I have a few clinical trials results and would like to calculate the Weighted mean for these studies. I am unsure how to calculate for these few trials:
Trial 1:
Drug: 25/85 (25 patients out of 85 patients response to this drug)
Placebo: 11/75 (11 patients out of 75 patients response to placebo)
Trial 2:
Drug: 30/200 (30 patients out of 200 patients response to this drug)
Placebo: 10/170 (10 patients out of 170 patients response to placebo)
Trial 3:
Drug: 90/150 (90 patients out of 150 patients response to this drug)
Placebo: 10/250 (10 patients out of 250 patients response to placebo)
Can anyone teach me how to calculate?
Appreciate your kind help for this matter.
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What is it that you are wanting to do? You have 3x2 design (three sites by the experimental condition) and one binary outcome. Do you want something like the log-odds ratio for each site, do you want to stick all the data into, for example, a logistic regression? You say weighted mean. Weighted by what (and for what purpose)? Note that with n=3 trials, treating as a fixed factor in whatever model makes more sense than random.
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Through a Wnt inhibition assay, I have found out that my test drug, which is easily available in the market and used for Hyperlipidemia, is a good Wnt inhibitor. Now, I want to conduct an animal study. How can I determine the dose of my test drug?
Many articles are available for my drug for various diseases. Can I take doses from these articles? I need three doses: Low, Medium, and High."
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Hi Ruchi...you didn't mention what kind of model organism is going to be used in vivo studies. No. of factors have to be taken into consideration for in-vivo drug administration studies. As Kerry S Vistisen suggested, you should follow the other articles as references for test drug administration. Also, if your test drug is a repurposed drug, follow the guidelines of the FDA and compare test drugs with references to drug-dose conversion from various databases such as PubMed and Google.
The following article will help you to understand the basics of animal drug administration:
Turner PV, Brabb T, Pekow C, Vasbinder MA. Administration of substances to laboratory animals: routes of administration and factors to consider. J Am Assoc Lab Anim Sci. 2011 Sep;50(5):600-13. PMID: 22330705; PMCID: PMC3189662.
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Clinical Superiority ,inferiority
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Hello Manjusha,
A non-inferiority trial aims to demonstrate that the new drug is not worse than the comparator by more than a small pre-specified amount which is called the non-inferiority margin. In other words, the new drug is at least as good as the comparator and not worse.
A superiority trial aims at showing that the new drug is superior (better than) the comparator.
An equivalence trial is commonly designed to confirm that the new drug is similar in efficacy to the comparator. Such a trial aims to show that the new drug is no better and not worse than the comparator.
Best.
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Hi there,
I had some trouble finding suitable concentrations for the synergism of two drugs. My experimental design is as follows, and the calculation is used CompuSyn:
Data for Drug: A [uM]
Dose Effect
50.0     0.0792
100.0     0.3117
250.0     0.3938
500.0     0.5575
1000.0     0.9502
Data for Drug: B [uM]
Dose Effect
50.0     0.017
150.0     0.1656
300.0     0.3788
500.0     0.6461
700.0     0.7935
CI Data for Non-Constant Combo: A+B
Dose A Dose B Effect CI
10.0     500.0     0.6129     1.12282
25.0     500.0     0.6742     1.02014
50.0     500.0     0.6381     1.17713
100.0     500.0     0.6313     1.33936
250.0     500.0     0.6847     1.55157
I would like to find suitable concentrations for A+B (CI<1.0), but failed. Please give me some suggestions, thanks a lot!
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If you are working on Chemotherapeutic agents, first determine the Minimum Inhibitory Concentration of each of the substances. Then combine the substances at 25% of the MIC of each substance. If you don't obtain expected effect at this point, try additive effect by combining 50% of the MIC of each drug.
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Antibiotics drug
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No, I do not think so, because it is never too late to discover anything and it might lead you to search for something novel. Okay, lets talk about the least benefit you can extract from discovering new antimicrobial compounds from plants is that at the end of the study you will be having very deep understanding of the topic (at least about particular compound or plant or even pathway) and also there will be a number of good research publications. I think you should start the study in this field.
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Viral diseases
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Unlike bacteria or cancer cells, which have many conserved cellular components vulnerable to chemotherapy, viruses are genetically unique pathogens reliant on host cells for replication. Developing broadly effective antiviral chemotherapies is extremely difficult due to these virologic features. Therefore, specific antiviral agents must be designed to inhibit key viral proteins or replication steps, rather than taking a chemotherapy approach.
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Dear all -
we would like to produce and study biofilms of Pseudomonas aeruginosa. We are not well equipped, only a simple microscope. I wonder if it could be possible to make estimations on the drug (peptide) activity on the biofilm by using a plate reader to grow the biofilm and somehow use this setup to follow the live and dead cell staining?
Thank you very much for your response!
Have a nice day
Kornelius
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Yes, this is actually a common and well developed approach. There are many variations that have been adapted but most involve growing biofilms in microtiter plates, washing and removing cell biomass, and then staining and quantifying biofilm biomass. This can be tricky with certain phenotypes of very thin/fragile pellicle biofilms, but you can scan the literature for variations of this assay to suit your specific needs.
Another very simple method that requires no specialized equipment is a glass-bead based assay. Glass beads can be sterilized easily and dropped on top of pellicle biofilms to measure their tensile strength. Alternatively, surface-attached biofilms can be grown on glass beads, then subjected to disinfectants and are then easily manipulated for downstream microscopy, viability experiments, etc.
Best wishes with the research ahead!
ACA
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I use the following equation to calculate:
Percentage difference between treated and control cells
=
(O2 x A1) - (O1 x A2)
(O2 x P1) - (O1 x P2)
x100
Where:
  • O1 = molar extinction coefficient (E) of oxidized alamarBlue (blue) at 570 nm
  • O2 = E of oxidized alamarBlue at 600 nm
  • A1 = absorbance of test wells at 570 nm
  • A2 = absorbance of test wells at 600 nm
  • P1 = absorbance of positive growth control well (cells plus alamarBlue but no test agent) at 570 nm
  • P2 = absorbance of positive growth control well (cells plus alamarBlue but no test agent) at 600 nm
First question: Is this equation okay for the resazurin test?
Second question: My results show that P1 and P2 are equal or less than the A1 and A2. The color of positive control(P1 and P2) becomes bright pink. I think the control absorbance (suspension of cells without drugs + resazurin) should always be more than the group of cells treated with drugs to calculate correctly. While the absorbance of my control is less than the samples. I checked the resazurin and the ELISA reader and I am sure of the authenticity of them.
What do you think is the problem?
Thanks.
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Yes, the equation you have provided is correct for calculating the percentage difference in reduction of resazurin between treated and control cells in the resazurin assay. This is a standard way to quantify the results.
Regarding your second question - you are absolutely right that the positive control wells (cells + resazurin but no drug) should show more metabolic activity and reduce more resazurin (thus give higher absorbance readings) compared to the drug-treated wells.
Some things to troubleshoot:
- Make sure the positive control cells are healthy and actively proliferating/metabolizing. Old, dense or contaminated cultures could give low readings.
- Use the optimal cell seeding density. Too low density can reduce metabolic activity.
- Allow sufficient incubation time for the cells to reduce resazurin before measuring absorbance.
- There could be an issue with resazurin stock solution if the positive control wells turn brightly pink. The conversion to fluorescent resorufin indicates reduction, but there should still be enough oxidized resazurin left to allow quantification. Make fresh stock.
- carefully confirm there are no pipetting errors mixing cells, drugs, resazurin etc.
I would first repeat the assay with fresh optimized positive control cells + new resazurin to see if gives expected higher readings compared to treated cells.
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I have to do a clonogenic experiment, and the interventions contain drugs + radiation.
I was wondering which of the following protocols is better to use, as I have seen both in related articles.
.
.
.
A) 1. Seed cells in a high number (e.g. 100,000 cells)
2. Add drugs and radiation exposure
3. 24h after radiation exposure, trypsinize cells again and seed them in a low number (e.g. 500-2000 cells) for colony assay
4. Let them grow for 9-14 days
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B) 1. Seed cells in a low number (e.g. 500-2000 cells)
2. Add drugs and radiation exposure
3. Let them grow for 9-14 days
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So I'll admit I'm with the manufacturer of an system that automates these counts (GelCount) but I have spoken to a fair amount of researchers doing these assays.
Often seeding decisions are based on if the cell line being used is resistant to the treatment being looked at or not. For a resistant cell line groups will likely want to use a lower cell seeding as they do want to compare Drug A, B, C, etc... to see differences in colony growth between them but not have so many colonies its difficult to count or they overlap all over. Also in many cases if the control line (often no treatment) grows quite aggressively then again lower seeding will allow for it to be numerated easily.
On the other hand, if the lines growth is stunted or eliminated by a treatment extremally well a higher seed number will allow for greater comparisons to be easier to recognize for researchers.
Essentially, you want to choose a seeding that allows for as much growth as possible to allow you to see differences in treatments but not be so crowded you cannot figure out a colony number. This may take a little trial and error on your part to make the protocol can work for you. Alternatively you can just use another groups protocol if doing something similar.
If by chance your drug screen is somewhat large, you may find these short white paper helpful.
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Hello, I am facing a tricky problem. I have two ipSC cell lines, one with a point mutant and the other with WT. I performed some sensitivity assays, such as treatment with topotecan, etoposide, and other oxidative DNA damage drugs. In the initial passages, probably around 5-6, I saw that the mutant cell lines were sensitive to the drugs. However, later passages showed no sensitivity at all. I can go to the early passages to do my experiment every now and then. However, the main problem is that I have picked some colonies from my WT and mutant cell lines, including the Cas9 sequence incorporated in the genome to perform a CRISPR screen. But they lose sensitivity by the time I pick up, expand, and freeze the colonies. How do I keep the sensitivity part intact of the mutant cell lines? Any help or insight will be greatly appreciated.
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  • Minimize passaging and expansion as much as possible before assaying sensitivity. The more you passage and expand the lines, the more chances there are for adaptation/selection of resistant subclones.
  • Maintain early passage stocks of validated sensitive lines to go back to. Periodically thaw and validate sensitivity.
  • Consider assaying sensitivity in differentiated cell types rather than iPSCs, which may retain the phenotypes more stably.
  • When picking clonal lines after CRISPR editing, pick and expand clones rapidly, test sensitivity as early as possible.
  • Monitor expression of the mutant protein by Western blot to ensure it is maintained over time.
  • Look into integrating inducible systems for your mutant protein, so you can "turn on" expression only when needed.
  • Use CRISPR inhibition strategies like CRISPRi to knock down the mutant allele rather than deleting it completely.
  • Consider screening in haploid iPSC lines to avoid issues with diploidy.
  • Identify culture conditions that help maintain the sensitivity phenotype over time.
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I am a Ph.D research scholar in the department of pharmaceutical analysis.
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right sir. thank you so much for the clarification.
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I've synthesized drug loaded nanoparticles with PLGA and got an encapsulation of 40%. But when I break the pellets I am only getting a flat line in UV. The drug is soluble in DCM and Chloroform.
Thanks for your help.
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Try checking out the attached articles.
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I am currently conducting experiments on checking combinatorial effect of two small molecule natural compound against cancer cell line. However, I am unable to determine how the combination of two drug should be done. How the ratio should be managed so that I can check the difference of combinational effect of drug and compare them with effect of individual drug through cytotoxicity assay, mRNA expression, etc.
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You could take the easy route and use CalcuSyn software.
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In my project, I have degraded an antibiotic drug via the Sono-photocatalysis process. now I need to identify the degraded intermediates and propose a possible degradation pathway.
For now, I have LC data and the Mass spectrum of each exposure duration
this is my first project using LCMS so I have been stuck on this step for a while now
is there any software, I can get help from? to identify intermediates based on m/z values?
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Hello Bharat Bhargawa,
unfortunately, the evaluation of LC-MS data is usually complex and not easy,
especially if the user has little or no experience
For your particular problem of finding degradation products , it is helpful to work out possible structures and sum formulae in advance. Possibly there is also literature available.
In my experience, degradation processes are very often oxidations or hydroxylations, so that you can derive first possible products from the known starting molecule. From these theoretical molecular formulae you can simulate the isotope pattern for your possible products in your MS software or alternatively in online platforms. These masses can then be displayed in your MS software as an EIC (extracted ion chromatogram) and thus use the selectivity of the MS.
If you are using a high resolution MS, you can also use the masses under your LC peaks to calculate molecular formulae. These formulae must then be reconciled with the theoretical masses given above.If your MS has fragmentation capability, the fragment spectra are also useful for identifying structures.
Best regards
Joachim Horst
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Statistically speaking, it is virtually impossible to change a life of prison recidivism, drug/alcohol, and criminal behavior.
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and the question remains: "help change to what?"
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under biopharmaceutics classification system class 2 and 4 drugs have poor water solubility. by making them as solid dispersions their solubility can be increased. is there a specific method to measure whether the solubility has been increased in-vitro?
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Using Complex with Cyclodextrin, Fusion method, pH change method, Lyophilization , using surfactants, micronization of particles enhance surface area and also improve solubility and dissolution
Specifically intrepreated by using UV spectrscopic method for finding for solubility with different temperatures and processing conditions
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I’m conducting a stability test on levodopa using 0.1mol/L HCI as the solvent,but on the first day and the third day, the drug content exceeded 100%. May I ask what is the solution?
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usually the drug molecules content can vary in +/- perentage of the labelling amount. If its within the specified quantitites its okay
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I am currently conducting experiments using organ baths with rat duodenum and ileum tissues. These experiments involve the administration of various drugs, including Fluoroacetate, Bethanechol, Carbachol, SNP, Guanethidine, and Atropine. Additionally, I am using Krebs solution continuously aerated with 95% O2 and 5% CO2, maintaining a temperature of 37 degrees Celsius. My research focuses on studying the contraction and relaxation movements of the intestines, particularly the effects of these drugs in combination with Electrical Field Stimulation (EFS) set at parameters of 2-16 Hz, 1 msec, and 100V.
One significant challenge I face is the prolonged duration of these experiments, which can last several hours. During this extended period, I have noticed that the tissue responses are not as consistent or satisfactory as I would like them to be. I am particularly concerned about the inability to achieve the typical relaxation response observed with SNP and, in some cases, even observing contraction responses with SNP.
I am seeking guidance on how to maintain normal contraction after suspending the tissues and ensure accurate and consistent responses with each drug application. I am also uncertain about the timing of cumulative drug applications, such as Bethanechol and SNP, in relation to EFS. Additionally, I would appreciate guidance on the optimal duration to wait during each phase of drug application. Unfortunately, I have been unable to find this specific information in my literature search. I would greatly appreciate any assistance or suggested sources and contacts that could provide further insight into these challenges.
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Are you sure you mean 95% molecular oxygen and not regular air (21% oxygen and 78% nitrogen)? Hyperoxia can cause damage to tissues.
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Dear all,
I think that usually wound healing assay are made in 12- or 24-well plates. However, I need to test different drugs in triplets as single treatments and some of them in combinations.
Due to 1) Some of the drugs are available in a really small quantity.
2) I need all treatments to be measured at the same time.
3) It would be even better to use less cells and less media.
So, my question is, can we do such assays in 48-well plates? And would it also be feasible if we scratch the cell monolayer with a 200 microliters yellow?
Many thanks and regards.
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I'm not sure what you are trying to ask? Media containing 5-15% FBS is frequently used for mammalian cell/tumor cell tissue culture; and Mitomycin C is a highly cytotoxic DNA cross-linking agent, used as an anticancer agent. They serve two entirely different functions, and can't replace each other.
However, co-transfection with MCRA (the gene for mitomycin C resistance) can be used as a selection marker in tissue culture experiments. see the below reference.
Novel selection marker for mammalian cell transfection
Raymond P Baumann , David H Sherman, Alan C Sartorelli
  • DOI: 10.2144/02325st03
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I'm going to experiment with sepharose CL-4B gel to isolate drugs that are not enclosed in liposomes. I need to degas enough before using the sepharose gel, and most of the references seem to be done using a vacuum pump. We don't have this instrument in our laboratory, so is it okay to degas sepharose using bath type sonicator? Wouldn't it affect the structure of the sepharose gel? Or is there any other way to remove the air from the sepharose gel? Thank you.
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To degas means to reduce the partial pressure of a gas (steam). The partial vapor pressure can be reduced by supplying an inert gas to the area where the Sepharose gel is being used.
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I checked on the internet. (ΣFIC) was calculated for each well with the equation ΣFIC = FICA + FICB = (CA/MICA) + (CB/MICB), where MICA and MICB are the MICs of drugs A and B alone, respectively, and CA and CB are the concentrations of the drugs in combination. I have MICA and MICB. However, I don't know how to calculate CA and CB. If anyone knows how to calculate CA and CB by using prism or the other softwares, please help me. Thank you in advance
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Hello. I think there are some mistakes in the equation. You do not need the concentration of drugs A and B, but you need the MIC(A) in combination and MIC(B) in combination. for more information, you can read the following paper:
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Hello. In my study, patients came to the doctor 3 times. At each visit, it was assessed whether the patient was taking a certain class of drugs (yes / no), a total of 7 drug classes. I need to find out if their therapy differed at visits (i.e., for example, drug A was taken more often at visit 1 than at visit 2). What test do I need to apply for this dichotomous variables in three visits? ANOVA?
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Three way ANOVA. Bonfferoni test too.
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Proof of concept ,clinical trial relationship
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A Proof of Concept (POC) study is an early-stage clinical trial that aims to demonstrate the feasibility, therapeutic potential, or biological activity of a drug, often in a small number of subjects. It provides preliminary evidence that the drug can have the desired effect in humans before advancing to larger, more costly studies. For generic drugs, POC is typically not required since they are based on already approved drugs with established efficacy and safety profiles. However, for investigational new drugs, POC is crucial to determine if the drug works as intended and is safe. The POC study is an integral part of the drug development process, bridging the gap between preclinical studies and larger-scale clinical trials. For further reading, consider referring to "Principles of Clinical Pharmacology" by Atkinson et al. and the FDA's "Guidance for Industry: Investigational New Drug Applications (INDs) — Determining Whether Human Research Studies Can Be Conducted Without an IND."
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For hydrophilic drugs only hydrophilic polymers are used. Then why a combination of hydrophilic and hydrophobic polymers are used for hydrophobic drugs
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Hydrophobic drugs have poor solubility in water, which can limit their bioavailability and therapeutic effectiveness. By incorporating hydrophobic drugs into a matrix of hydrophilic polymers, their dispersion and solubility can be improved, leading to better absorption and bioavailability in the body.
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Does Daprodustat require a separate facility or dedicated facility for their drug product?
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Daprodustat is prescribed to persons with chronic kidney failure (a disease in which the kidneys gradually cease functioning altogether over time) who have been undergoing hemodialysis for at least 4 months to treat anaemia (a lower than normal quantity of red blood cells).
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I need to load a drug on polymer nanoparticle, most of procedures used triethylamine TEM with chloroform for solubilization the drug, but I have trimethyl amine TMA instead of TEM, my questions is is it possible to use TMA instead of TEM?
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Comparing to Et3N (liquid), the Me3N at normal conditions is a gas - so Et3N is simply easier to use in the lab. I suppose if you have a chloroform solution of either of them, both can be used, as long as your "drug" is soluble ...
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I'm trying to screen for a suitable range of concentration of Gefitinib for my subsequent ELISA assay, the final aim is to select a Gefitinib concentration that does not kill cells+give off inflammatory response. I will detect the levels of inflammatory markers and compare it to the reading after certain treatment, which believe to be able to reduce the level of inflammatory markers.
I have tested on the range of concentration between 80-600 ng/mL and the result from my MTS assay did not show much significance in terms of cell cytotoxicity, meaning the viability is more or less the same (60%-90% viability compared to my vehicle control), and the trend looks odd (cell viability increases as drug concentration increases). I prepared my Gefitinib drug stock with 100% DMSO and dilute it with growth medium for all my assays. The initial range of concentration is determined based on literature mentioning the Cmax value of Gefitinib in healthy individuals, which I believe is more relevant to my study, since I'm treating normal human epidermal keratinocyte cells (NHEK) .
Anyone has any experience with treating NHEK cells with Gefitinib? I've seen a lot of studies being done with cancer cells but not with normal cells. I'm unsure of the limit of concentration to be used, of course at higher drug concentrations cells are going to be killed and inflammatory response will be more significant, but it does not make sense if I just use a high concentration without any reference to real life/clinical situations?
I'm asking this so that I can save resource (the drugs used are expensive, so as MTS reagent and ELISA kits) and not to blindly increase the concentration just for the sake of getting a positive result. I hope to get some enlightenment on this!
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Have you gone through the paper attached below?
The investigators have used 3, 10, 30nM concentrations of the drug (EGFRi) including Gefitinib prepared from a 10 mM stock solution dissolved in DMSO. Keratinocytes isolated from donated human tissue were used in the study. A higher drug concentration of 1μM has been found to be toxic to cells.
Best.
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Salt formation of weak acid causes ionization of drug due to which solubility increase but we have studied drug absorbed in unionized form then how salt formation will improve the absorption of a drug?
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Due to the effect of diffusion layer on its salt form