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Fish - Science topic
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Questions related to Fish
The processing of fish into meal and oil is quite straightforward: fish is an input and fishmeal and oil comprise output. Thus, there is the input of protein and lipids by fish. And there is also output of protein (by fishmeal) and lipids (fish oil and fishmeal). If the processing were a perfect and closed system, there would no technological losses and the output of protein by fishmeal and the output of lipids by fish oil and fishmeal would be equal to input of protein and lipids by fish.
In real life, the processing is not a completely perfect system and some losses (e.g. evaporation, rinsing) likely occur. How large or small are approximately these losses of protein and lipids if the output is compared with the input? Perhaps, someone has made calculations of “protein balance” and “lipids balance”.
My guess is that these losses should be fairly low as the modern processing of fish is efficient. However, I am not an expert in this field. I would appreciate estimates and opinion of more knowing people.
Best regards,
Alberts Auzins
It's not a question, but if anyone has a photo of the eggs of the fish called Harpagifer bispinis, please share it with me.
Analysis of Microplastics
Which of this techniques can give us the best result in detection of chromosomal abnormalities
Calling All Fish Biologists,
Myself, Dr. Marty Hamel with the University of Georgia and fellow biologist from North Carolina, Kevin Dockendorf are in the process of hopefully pulling together a standard weight equation and standard length categories for the Flier (Centrarchus macropterus). Georgia has a popular and very abundant population of Flier residing in the Okefenokee Swamp. North Carolina also has several well established coastal populations from the Dismal swamp all the way down to South Carolina . Flier typically inhabit low PH, typically very acidic, tannic, blackwaters and can live in lakes, rivers, backwater swamps, creeks. Kevin recently helped put together a excellent video with Carolina ALL OUT on North Carolina Flier fishing. See the link: https://www.youtube.com/watch?v=jGwyoX_B2DU
The Flier is found in the southern part of the United States along the Atlantic seaboard from the Potomac River drainage in Maryland, where it was most likely introduced down to central Florida. It is then found along the Gulf of Mexico drainages as far west as the Trinity River, Texas, and then north in Mississippi River system to above the fall line in southern Illinois and southern Indiana.
📷
We are looking for TL (mm) and weight (g) data in the following 16 states (FL, GA, SC, NC, MS, TX, ILL, IND, KY, AL, ARK, OK, MZ, TN, VA, MD).
We prefer data that has a associated date and GPS coordinates, to help us fill out the data distribution map for the eventual manuscript.
This equation would come in handy for university and agency field staff when attempting to assess proper condition and size structure of any Flier population needing to be managed.
We are not in a rush to secure data, as this is typically a year-long process of pestering folks until they find the time to dig up the data or even go and try to catch some data (either with electrofishing or better yet hook and line!).
We would like each population to have a minimum of 10 fish but will take whatever you can provide, with populations of 30 to 50 being preferred but we will take as high a number of fish and as many populations as you want to give us. More data is definitely better! We would rather not bootstrap, if we don’t have too.
We realize some of these states will not have enough fish in the data set. Just send what you have and we will determine if you have enough we can work with.
If your agency has a centralized area where data is stored that is probably the best place to look for this data and send this request to them.
Feel free to forward this request to a biologist in your state that may have data separate from a statewide database. As I have learned the hard way in the past, not all agencies or universities have one centralized location to report data too.
We sincerely thank you for your time,
Tim Bonvechio
Dear All,
I have an imagery with a single fish species within each image along with a list of morphometric measurements of the fish (length, width, length of tail, etc). I would like to train a CNN model that will predict these measurements having as input only the images. Any ideas what kind of architecture is ideal for this task? I read about multioutput learning, but I haven't found a practical implementation in Python.
Thank you for your time.
I'm working with Fish catch in the Amazon, however there's no data available on the fishing vessels, fishing days or number of fishermen involved. I would like to know different approaches to standardize the monthly fish catch
How are warming ocean temperatures impacting fish and other marine mammals and difference between ocean currents and water mass?
What are the best practices for selecting environmental variables in ecological niche modeling for coral reef fish species?
Hello,
I am trying to visualize a genomic locus. I produced Alexa fluor 488 dUTP tagged FISH probes by nick translation. I used two PCR amplified DNA fragments (12kb and 16 kb) that span through 28 Kb region. Although PNA telomere probes work with no problem, my probes are giving high background signal. I used cot1 dna, hyblock dna, and salmon dna as blocking reagents. How can I fix this issue? I attached the pictures of telomeres and my probes
I want to see if there is a difference in age structure between male and female fish so I have ages from 0.5 to 8.5 and the number of each sex at that age but I dont know which variables I use in the chi squared
I hard that not to apply iodine mix salt in the fresh water fish pond. But I've no idea what is the bad effect of iodine for fresh water fish body.
I am doing protein estimation from fish tissue by Bradford's method but after adding the reagent cbbg- 50mg, ethanol-50ml, ortho-phosphoric acid- 100ml in 1L soln precipitating clot is shown even in the standard BSA solutiin. Each test tube contain. 0.1 ml sample+0.9 ml phosphate buffer+5ml bf reagent.
I am doing a study focusing on analyzing differences in fish assemblages due to temperature extremes. I calculated Shannon diversity, evenness, richness, and total abundance for each year sampled. The years are grouped into 2 temperature periods essentially as well, which is what I want to overall compare.
On viewing results, there appears to be consistency across years, and when comparing the two groupings. I do have multivariate tests to follow this after for community composition, but when describing univariate results, are there any statistical tests that can be followed up with to better show there is no difference, rather than simply describing the numbers and their mean differences?
Hepatopancreas and kidney: control shows higher CAT, GPX, GSH and GST activity than fish exposed to pollution.
I'm planning a project focused on studying osteocytes in the long bones of rats, requiring intact sections of both cortical and trabecular bone. To achieve this, I'm considering Kawamoto's tape sectioning technique for frozen blocks. My concern is about effectively adhering the tape, with the tissue section facing upwards, to ensure it remains attached to the glass slide throughout the entire FISH protocol. I'm interested in knowing if anyone has successfully used this technique for FISH applications with any type of tissue.
Imposing a fish of x Does its quality and nutritional value vary from country to country along the coast itself?
Is there any research on this idea?
I am doing an experiment involving microinjections with zebrafish and have been experiencing high amounts of mortality.
The embryos look healthy upon injection, but many of them are dying between 24h and 120h post injection.
I've been playing around with lower temperatures and making sure fish aren't sitting too long in tricaine to reduce the amount of mortality post-injection, but neither seem to be changing much.
If anyone has any tips to possibly minimize the amount of fish that are dying, I would greatly appreciate it!
Somebody can share me this book in pdf format?
I really need it for a project.
Thanks!
Hello all,
I have a question. I am trying to test my DNA probes (that are biotin labelled) that we have in our lab to perform FISH. Probes are around 80 to 200 bp. I am doing a dot blot, to test our probes. However, I can not see anything when I develop the blot with ECL.
Does anyone have a good protocol that can help me? I feel like, I am missing a fundamental point. It doesn't make sense there is absolutely nothing on the membrane, complete white.
Looking forward to hear ideas,
Dilan
In have been doing an NMDS of plancton, fish and aquatic macroinvertebrate abundances with 7 environmental variables in PAST. But when the analysis is complete the stress value it gives me is 0, is it normal or is there something I am not doing right?
Does the amb gene contribute in the ontogenic development and sex differentiation of fish?
Happy to announce two PhD positions in fish ecophysiology 📣
Fully funded, fun fish temperature physiology, supervision by me, @shaunkillen, @NPilakouta! @Naturvetenskap
Please spread the word 🙏
I am working on a series of lock and dam structures, where as a mitigation tool, managers release water from an upstream reservoir to supplement the natural flows in order to submerge the dam for migratory fish to traverse over top. This is not common and I have not found anything in the literature that discusses this. There are plenty of examples of environmental flows prescribed for downstream ecological effects but nothing like I describe above. If you know of any studies please point me to them. Also, if there are any studies that show passage of fish during natural flows that inundate a low-head dam, I would be interested in those as well. Thanks in advance.
I have tried to extract RNA from fish semen and testis using the RNEasy kit and also have the PureLink RNA kit. I have tried a few modifications I've found online, but the RNA comes either highly degraded, despite what a simple gel run would suggest, or contaminated with other biomolecules. When trying to initially homogenize the tissue it becomes extremely gelatinous and therefore impossible to pipette, and unfortunately I do not have sophisticated equipment to use beads and other methods, although I am inclined to think the sample would still be too gelatinous for this method. I haven't found many references using liquid nitrogen to homogenize the tissues, so any past experiences would be highly appreciated. Also, if anyone has some suggestions for any of the two kits' protocols it would be appreciated too. I've read the addition of AGPC could be useful in this case.
Thanks to everyone in advance!
Can we use the kit for mice to study inflammation activities in fish for TNF alpha, IL-beta and iNOS in serum
This is so common in nature of fish but why they do this, no idea.
We have analysed fish and rapeseed oils for secondary oxidation products (AOCS, 1998) using the direct method protocol from Current Protocols in Food Analytical Chemistry (2001). We weighed off 25 and 100 mg of fish oil and rapeseed oil, respectively, and added 25 mL of butanol in a volumetric flask. The rest was performed according to the protocol; the same goes for the standard curve. However, now we are struggling to calculate the concentration of TBA in mg/kg oil. The formula described in the protocol gives us extremely high concentrations: K = (1/slope) × 72.03 g/mol × (25 ml/5 ml) × 10e6 ]/m = (3.60 × 10e8 )/(slope × m)
Can someone help out?! Thanks in advance
Hi everyone,
I´ve been struggling with low DNA yields and weird ratio readings extracted from stool samples collected from fish. I am currently using the PowerFecal Pro DNA extraction kit from Qiagen and strictly following their guidelines, but I keep having the same problem.
To address that problem, I tried to decrease the elution buffer (EB) volume to concentrate my samples more, pass the EB twice through the silica membrane, increase the vortexing time, change the vortex machine (Qiagen suggests vortex-genie, but I tried the Precellys as well), wash the stool sample with PBS prior to the extraction process, incubate the tubes at RT to allow the ethanol to evaporate completely, and also soak the silica membrane with EB for a couple of minutes before centrifuging.
None of these fixed my problem.
Could adding an incubation step (65°C/10min) before the beads beat improve efficiency? Since I don´t know if the kit´s lysis buffer contains proteinase K or not,, I wonder if adding to it and then incubating it would improve the DNA yielding.
Would you happen to have any suggestions?
Thank you in advance for all the help
PS: By low yields, I mean ~1ng/ul and weird ratios >2
Dear
A small marine fish can not understand what is sea. An ant can not imagine how big the Himalayas is.
There is UNIVERSE. Let us stand at the coast and observe the sea. We can not ask the meaningless question " IS THERE GOD"
I would like to find a job in KSA, Katar, Imarate or in Canada. It is impossible to remain suffering. What ever you work, you are negleted, no hope, no life.
My scientific publications:
Publications
2023
1- Cheriet, S.; Lengliz, S.; Romdhani, A.; Hynds, P.; Abbassi, M.S.; Ghrairi, T. Selection and characterization of bacteriocinogenic Lactic Acid Bacteria from the intestine of gilthead seabream (Sparus aurata) and whiting fish (Merlangius merlangus): promising strains for aquaculture probiotic and food bio-preservation. Life 2023, 13, 1833. https://doi.org/10.3390/ life13091833.
2- Hmissi S, Raddaoui A, Frigui S, Abbassi MS, Achour W, Chebbi Y, Thabet L. Detection of carbapenem resistant Pseudomonas aeruginosa co-harboring blaVIM-2 and blaGES-5 in burn patients. Acta Microbiol Immunol Hung. 2023. doi: 10.1556/030.2023.02089.
3- Benlabidi, S.; Raddaoui, A.; Lengliz, S.; Cheriet, S.; Hynds, P.; Achour, W.; Ghrairi, T.; Abbassi, M.S. Occurrence of high-risk clonal lineages ST58, ST69, ST224, and ST410 among extended-spectrum β-lactamase-producing Escherichia coli isolated from healthy free-range chickens (Gallus gallus domesticus) in a rural region in Tunisia. Genes 2023, 14, 875. https://doi.org/ 10.3390/genes14040875.
4- Said Bouzidi, Akila Bourabah, Sarah Cheriet, Mohamed Salah Abbassi, Samia Meliani, Hanane Bouzidi.Occurrence of virulence genes and methicillin-resistance in Staphylococcus aureus isolates causing subclinical bovine mastitis in Tiaret area, Algeria. Letters in Applied Microbiology, 2023, 0, 1-9 https://doi.org/10.1093/lambio/ovad003.
5- Dhaouadi S, Romdhani A, Bouglita W, Chedli S, Chaari S, Soufi L, Cherif A, Mnif W, Abbassi MS, Elandoulsi RB. High Biofilm-forming ability and clonal dissemination among colistin-resistant Escherichia coli isolates recovered from cows with mastitis, diarrheic calves, and chickens with colibacillosis in Tunisia. Life. 2023; 13(2):299. https://doi.org/10.3390/life13020299.
6- Ben Said M, Thabet L, Cheriet S, Messadi AA, Gómez P, Ruiz-Ripa L, Sghaier S, Hassen B, Hassen A, Torres C, Abbassi MS. Widespread of the Vienna/Hungarian/Brazilian CC8-ST239-SCCmec III MRSA clone in patients hospitalized in the Tunisian Burn and Traumatology Center. Lett Appl Microbiol. 2023;76:ovac001. doi: 10.1093/lambio/ovac001.
7- Hajer Kilani, Mohamed Salah Abbassi, Rim Dhifalli, Bouraoui Jihene, Riadh Mansouri, Noureddine Ben Chehida, Ilhem Boutiba-Benboubaker. Comparison of Antimicrobial Susceptibility of Escherichia Coli Isolated from Fecal Poultry and Bovine Housed in Tunisian Farms; Phylogroup Diversity and Detection of Tetracycline and Sulfonamides Resistant Genes With Integron Class1. Transl Med OA, 2023 ; 1(1), 17-26.
2022
1- Melek Ben Aissa, Sana Ferjani, Mohamed Salah Abassi, Nada Al-Suwailem and Ilhem Boutiba. (2022) Characterization of Escherichia colicefotaxime-resistance in Al-Ahsa, KSA: predominance of CTX-15 and first report of blaCMY-42 gene.Appl. Sci. 2022, 12(19):9964. https://doi.org/10.3390/app12199964.
2- Bilel Hassen, Salah Hammami, Abdonnaceur Hassen, Mohamed Salah Abbassi. Molecular mechanisms and clonal lineages of colistin-resistant bacteria across the African continent: A scoping review. Letters in Applied Microbiology. 2022. 75:1390-1422.
3- S. Harbaoui, S. Ferjani, M.S. Abbassi, M. Saidani, T. Gargueh, M. Ferjani, Y. Hammi, I. Boutiba-Ben Boubaker. Genetic heterogeneity and predominance of blaCTX-M-15 in cefotaxime-resistant Enterobacteriaceae isolates colonizing hospitalized children in Tunisia. Letters in Applied Microbiology. 2022;75(6):1460-1474.
4- Mohamed Salah Abbassi, Souhir Badi, Sana Lengliz, Riadh Mansouri, Salah Hammami, Paul Hynds. Hiding in plain sight - Wildlife as a neglected reservoir and pathway for the spread of antimicrobial resistance: A narrative review. FEMS Microbiology Ecology, 2022. 98(6):fiac045. doi: 10.1093/femsec/fiac045.
5- Ana R. Freitas, Ana P. Tedim, Ana C. Almeida-Santos, Bárbara Duarte, Houyem Elghaieb, Mohamed S. Abbassi, Abdennaceur Hassen, Carla Novais, and Luísa Peixe. High-resolution genotyping unveils identical ampicillin-resistant Enterococcus faecium strains in different sources and countries: a One Health approach. Microorganisms 2022, 10: 632. https://doi.org/10.3390/ microorganisms10030632.
6- Lengliz, S., Cheriet, S., Raddaoui, A., Klibi, N., Ben Chehida, N., Najar, T., Abbassi, M. S. (2022). Species distribution and genes encoding antimicrobial resistance in enterococcus spp. isolates from rabbits residing in diverse ecosystems: A new reservoir of linezolid and vancomycin resistance. Journal of Applied Microbiology, 132:2760-2772. doi.org/10.1111/jam.15461.
7- Werheni Ammeri R, Di Rauso Simeone G, Hidri Y, Abbassi MS, Mehri I, Costa S, Hassen A, Rao MA. Combined bioaugmentation and biostimulation techniques in bioremediation of pentachlorophenol contaminated forest soil. Chemosphere. 2022; 290:133359. doi: 10.1016/j.chemosphere.2021.133359.
8- Al-Gallas N, Belghouthi K, Barratt NA, Ghedira K, Hotzel H, Tomaso H, El-Adawy H, Neubauer H, Laouini D, Zarrouk S, Abbassi MS, Aissa RB. Identification and characterization of multidrug-resistant ESBL-producing Salmonellaenterica serovars Kentucky and Typhimurium isolated in Tunisia CTX-M-61/TEM-34, a novel cefotaxime-hydrolysing β-lactamase of Salmonella. J Appl Microbiol. 2022; 132(1):279-289. doi: 10.1111/jam.15211.
9- Djanette Barour, Mohamed Salah Abbassi, Oussama Amara, Rayane Benmabrouk. Antimicrobial resistance in Escherichia coliisolates from cattle and poultry in Algeria. Veterinaria, 2022; 71 (issue 3): 311-319. https://doi.org/10.51607/22331360.2022.71.3.311.
2021
1- Badi S, Ammeri RW, Abbassi Mohamed Salah, Snousssi M, Cremosini P, Luini M, Castiglioni B, Hassen Abdennaceur. Study of the diversity of 16S-23S rDNA internal transcribed spacer (ITS) typing of Escherichia coli strains isolated from various biotopes in Tunisia. Arch Microbiol. 2021; 204:32. doi: 10.1007/s00203-021-02684-x.
2- Aouadi Meriem, Kamel Msaada, Essia Sebai, Wissem Aidi Wannes, Mohamed Salah Abbassi, Hafidh Akkari. Antioxidant, anthelmintic and antibacterial activities of red juniper (Juniperusphoenicea L.) essential oil. Journal of Essential Oil Research. 2021; DOI: 10.1080/10412905.2021.1941338.
3- Benlabidi Saloua, Raddaoui Anis, Achour Wafa, Hassen Bilel, Torres Carmen, Abbassi Mohamed Salah, Ghrairi Taoufik. Genetic characterization of ESBL/pAmpC-producing Escherichia coli isolated from forest, urban park and cereal culture soils. FEMS Microbiol Ecol. 2021;97(11):fiab146. doi: 10.1093/femsec/fiab146.
4- Mohamed Salah Abbassi, Hajer Kilani, Islem Abid, Yolanda Sáenz, Paul Hynds, Sana Lengliz, Noureddine Ben Chehida, and Ilhem Boutiba-Ben boubaker. Genetic background of antimicrobial resistance in multiantimicrobial-resistant Escherichia coli isolates from feces of healthy broiler chickens in Tunisia. Biomed Res Int. 2021;2021:1269849. 2021 doi:10.1155/2021/1269849.
5- Lengliz Sana, Benlabidi Saloua, Raddaoui Anis, Cheriet Sarah, Ben Chehida Noureddine, Najar T, Abbassi Mohamed Salah. High occurrence of carbapenem-resistant Escherichia coli isolates from healthy rabbits (Oryctolagus cuniculus): first report of blaIMI and blaVIM type genes from livestock in Tunisia. Lett Appl Microbiol. 2021; 73: 708-717. doi: 10.1111/lam.13558.
6- Al-Gallas N, Khadraoui N, Hotzel H, Tomaso H, El-Adawy H, Neubauer H, Belghouthi K, Ghedira K, Gautam HK, Kumar B, Laouini D, Zarrouk S, Abbassi MS, Aissa RB. Quinolone resistance among SalmonellaKentucky and Typhimurium isolates in Tunisia: first report of SalmonellaTyphimurium ST34 in Africa and qnrB19 in Tunisia. J Appl Microbiol. 2021;130:807-818. doi: 10.1111/jam.14822.
7- Othman AA, Hiblu MA, Abbassi MS, Abouzeed YM, Ahmed MO. Nasal colonization and antibiotic resistance patterns of Staphylococcus species isolated from healthy horses in Tripoli, Libya. J Equine Sci. 2021;32(2):61-65. doi: 10.1294/jes.32.61.
8- Lengliz Sana, Abbassi Mohamed Salah, Rehaiem Amel, Ben Chehida Noureddine, Najar Taha. Characterization of bacteriocinogenic Enterococcus isolates from wild and laboratory rabbits for the selection of autochthonous probiotic strains in Tunisia. J Appl Microbiol. 2021; 131(3):1474-1486. doi: 10.1111/jam.15047.
9- Di Francesco A, Salvatore D, Sakhria S, Catelli E, Lupini C, Abbassi Mohamed Salah, Bessoussa G, Ben Yahia S, Ben Chehida Noureddine. High frequency and diversity of tetracycline resistance genes in the microbiota of broiler chickens in Tunisia. Animals 2021, 11, 377. https://doi.org/10.3390/ani11020377
10- Elnageh HR, Hiblu MA, Abbassi MS, Abouzeed YM, Ahmed MO. Prevalence and antimicrobial resistance of Staphylococcus species isolated from cats and dogs. Open Vet J. 2021; 10(4):452-456.
11- Kilani H, Abbassi MS, Ferjani S, Ben Chehida N, Boutiba-Ben boubaker. Virulence and comparison of methods for detection of biofilm formation by Escherichia coliisolated from retail meat in Tunisia. Journal of Microbiology and Modern Techniques. 4.
12- Bilel Hassen, Mohamed Salah Abbassi, Laura Ruiz-Ripa, Olouwafemi M. Mama, Chourouk Ibrahim, Saloua Benlabidi, Abdennaceur Hassen, Carmen Torres, Salah Hammami. Genetic characterization of extended-spectrum β-lactamase-producing Enterobacteriaceae from biological industrial wastewater treatment plant in Tunisia with detection of the colistin-resistance mcr-1 gene. FEMS Microbiol Ecol. 2021;97(3):fiaa231.
13- Ksibi B, Ktari S, Othman H, Ghedira K, Maalej S, Mnif B, Abbassi MS, Fabre L, Rhimi F, Le Hello S, Hammami A. Comparison of conventional molecular and whole-genome sequencing methods for subtyping Salmonellaenterica serovar Enteritidis strains from Tunisia. Eur J Clin Microbiol Infect Dis. 2021 ;40:597-606.
2020
1. Hassen B, Abbassi MS, Benlabidi S, Ruiz-Ripa L, Mama OM, Ibrahim C, Hassen A, Hammami S, Torres C. Genetic characterization of ESBL-producing Escherichia coli and Klebsiella pneumoniae isolated from wastewater and river water in Tunisia: predominance of CTX-M-15 and high genetic diversity. Environ Sci Pollut Res Int. 2020, 27:44368-44377 doi: 10.1007/s11356-020-10326-w.
2. Freitas AR, Tedim AP, Duarte B, Elghaieb H, Abbassi MS, Hassen A, Read A, Alves V, Novais C, Peixe L. Linezolid-resistant (Tn6246::fexB-poxtA) Enterococcus faecium strains colonizing humans and bovines on different continents: similarity without epidemiological link. J Antimicrob Chemother. 2020:dkaa227. doi: 10.1093/jac/dkaa227.
3. Souhir Badi, Mohamed Salah Abbassi, Mejdi Snoussi, Rim Werhani, Salah Hammami, Rasha Maal-Bared, Abdennaceur Hassen.High rates of antibiotic resistance and biofilm production in Escherichia coli isolates from food products of animal and vegetable origins in Tunisia: a real threat to human health. International Journal of Environmental Health Research, 2020; 1:11.
4. Sana Dhaouadi, Leila Soufi, Amani Hamza, Didier Fedida, Chtioui Zied, Bilel Hassen, Emna Awadhi, Mohamed Mtibaa, Ameur Cherif, Carmen Torres, Mohamed Salah Abbassi, Ramzi Boubaker Landolsi. Co-occurrence of mcr-1 mediated colistin resistance and β-lactamases encoding genes in multidrug-resistant Escherichia coli from broiler chickens with colibacillosis in Tunisia. J Global Antimicrobial Resistance. 2020; 22:538-545.
5. Hajer Kilani, Sana Ferjani, Riadh Mansouri, Ilhem Boutiba-Benboubaker, Mohamed Salah Abbassi. Occurrence of plasmid-mediated quinolone resistance determinants among Escherichia colistrains isolated from animals in Tunisia: specific pathovars acquired qnrgenes. J Global Antimicrobial Resistance, 2020. 20, 50-55.
6. Bilel Hassen, Mohamed Salah Abbassi, Laura Ruiz-Ripa, Olouwafemi M. Mama, Abdennaceur Hassen, Carmen Torres, Salah Hammami. High prevalence of mcr-1 encoding colistin resistance and first identification of blaCTX-M-55in ESBL/CMY-2-producing Escherichia coli isolated from chicken faeces and retail meat in Tunisia. Int J Food Microbiol. 2020. 318. 108478. DOI: 10.1016/j.ijfoodmicro.2019.108478.
7. Nariman Farag Almshawt, Murad Ali Hiblu, Ahmed Shaban Abid, Mohamed Salah Abbassi, Ahmed Asaid Elkady, Yousef Mohamed Abouzeed, Mohamed Omar Ahmed. Antimicrobial resistance among commensal enteric bacteria isolated from healthy cattle in Libya. PAMJ One Health. 2020;1:3.
2019
1. Bilel Hassen, Benlabidi Saloua, Mohamed Salah Abbassi, Laura Ruiz-Ripa, Olouwafemi M. Mama, Abdennaceur Hassen, Salah Hammami, Carmen Torres.. mcr-1 encoding colistin resistance in CTX-M-1/CTX-M-15- producing Escherichia coli isolates of bovine and caprine origins in Tunisia. First report of CTX-M-15-ST394/D E. colifrom goats. Comparative Immunology, Microbiology and Infectious Diseases. 2019. 67:101366. doi.org/10.1016/j.cimid.2019.101366.
2. Houyem Elghaieb, Ana P. Tedim, Mohammed Salah Abbassi, Carla Novais, Bárbara Duarte, Abdennaceur Hassen, Luísa Peixe, Ana R. Freitas. From farm-to-fork: identical clones and Tn6674-like elements in linezolid-resistant Enterococcus faecalis from food-producing animals and retail meat. J Antimicrob Chemother. 2019. 75:30-35.
3. Elghaieb H, Freitas AR, Abbassi MS, Novais C, Zouari M, Hassen A, Peixe L. Dispersal of linezolid-resistant enterococci carrying poxtA or optrA in retail meat and food-producing animals from Tunisia. J Antimicrob Chemother. 2019. 74:2865-2869
4. Khemiri M, Abbassi MS, Elghaieb H, Zouari M, Dhahri R, Pomba C, Hammami S. High occurrence of enterotoxigenic isolates and low antibiotic resistance rates of Staphylococcus aureus isolated from raw milk from cows and ewes. Lett Appl Microbiol. 2019; 68: 573-579.
5. Asma Bel Hadj Ahmed, Mohamed Salah Abbassi, Beatriz Rojo-Bezares, Lidia Ruiz-Roldán, Rabii Dhahri, Ines Mehri, Yolanda Sáenz, Abdennaceur Hassen. Characterization of Pseudomonas aeruginosa isolated from various environmental niches: New STs and occurrence of antibiotic susceptible “high-risk clones”. Inter J Environ Health Res. 2019. 16:1-10. doi.org/10.1080/09603123.2019.1616080.
6. Senda Sghaier, Mohamed Salah Abbassi, Alvaro Pascual, Lara Serrano, Paula Díaz- De-Alba, Meriam Ben Said, Bilel Hassen, Chourouk Ibrahim, Abdennaceur Hassen, Lorena Lopez-Cerero. ESBL-producing Enterobacteriaceae from animal origins and wastewater in Tunisia: first detection of O25b-B23-CTX-M-27-ST131 Escherichia coli and CTX-M-15-OXA-204-producing Citrobacter freundii from wastewater. J Global Antimicrob Resist 2019 ;17:189-194
7. Bilel Hassen, Senda Sghaier, Mohamed Salah Abbassi, Mohamed Amine Ferjani, Meriam Ben Said, Abdennaceur Hassen, Salah Hammami.Multidrug resistance and the predominance of blaCTX-M in extended spectrum beta-lactamase-producing Enterobacteriaceae of animal and water origin. J Mol Microbiol Biotechnol 2019;28: 201-206. DOI: 10.1159/000495409.
8. Tabatabaei S, Najafifar A, Askari Badouei M, Zahraei Salehi T, Ashrafi Tamai I, Khaksar E, Abbassi MS, Ghazisaeedi F. Genetic characterization of methicillin resistant Staphylococcus aureus and Staphylococcus pseudintermediusin pets and veterinary personnel's in Iran: new insights into emerging MRSP. J Glob Antimicrob Resist. 2019. 16:6-10.doi: 10.1016/j.jgar.2018.08.022.
2018
1- A. Askri, N. Fitouhi, A. Raach-Moujahed, MS Abbassi, Z. Maalaoui, H. Debbabi. Effect of a commercial prebiotic « AVIATOR®» on zootechnical performances, caecal microflora and meat quality of broilers. Journal of new sciences, Sustainable Livestock Management, 2018. 8 (1): 161-168
2- Monistero V, Graber HU, Pollera C, Cremonesi P, Castiglioni B, Bottini E, Ceballos-Marquez A, Lasso-Rojas L, Kroemker V, Wente N, Petzer IM, Santisteban C, Runyan J, Veiga Dos Santos M, Alves BG, Piccinini R, Bronzo V, Abbassi MS, Said MB, Moroni P. Staphylococcus aureus Isolates from bovine mastitis in eight countries: Genotypes, detection of genes encoding different toxins and other virulence genes. Toxins (Basel). 2018;10(6). pii: E247. doi: 10.3390/toxins10060247.
3- Abbassi Mohamed Salah, Debbichi Najwa, Hammami Salah. Virulotypes of uropathogenic E. coli isolates from diabetic patients in Tunisia: Occurrence of the invasion-associated IbeAgene. American Journal of Clinical Microbiology and Antimicrobials. 2018; 1(1): 1001
4- Elaa Maamar, Carla Andrea Alonso, Zaineb Hamzaoui, Nouha Dakhli, Mohamed Salah Abbassi, Sana Ferjani, Mabrouka Saidani, Ilhem Boutiba-Ben Boubaker, Carmen Torres. Emergence of plasmid-mediated colistin-resistance in CMY-2-producing Escherichia coliof lineage ST2197 in a Tunisian poultry farm. International Journal of Food Microbiology 2018; 269:60-63.
5- Souhir Badi, Paola Cremonesi, Mohamed Salah Abbassi, Chourouk Ibrahim, Majdi Snoussi, Giulia Bignoli, Mario Luini, Bianca Castiglioni, and Abdennaceur Hassen. Antibiotic resistance phenotypes and virulence-associated genes in Escherichia coli isolated from animals and animal food products in Tunisia. FEMS Microbiology Letters, 2018, 365(10). doi: 10.1093/femsle/fny088.
6- Monia Khemiri, Mohamed Salah Abbassi, Natacha Couto, Riadh Mansouri, Salah Hammami, Constança Pomba. Genetic characterization of Staphylococcus aureusisolated from milk and nasal samples of healthy cows in Tunisia: First report of ST97-t267-agrI-SCCmecV MRSA of bovine origin in Tunisia. Journal of Global Antimicrobial Resistance, 2018. 14:161-165.
7- Ben Rhouma A, Abbassi MS, Boubaker A. Effects of supplementing diets with thymol on performance growth and caecal microflora of growing rabbit. Journal of new sciences, Agriculture and Biotechnology, 2018. 57 (1), 3693-3697.
2017
1- Abbassi Mohamed Salah. Enterobacteriaceae and the CTX-M extended-spectrum β-lactamases (CTX-M ESBLs): What we should know? Journal of Infectious Diseases and Medical Microbiology. Editorial. Octobre 2017.
2- Ana R. Freitas, Houyem Elghaieb, Ricardo León-Sampedro, Mohamed Salah Abbassi, Carla Novais, Teresa M. Coque, Abdennaceur Hassen, Luisa Peixe. Detection of optrA in the African continent (Tunisia) within a mosaic Enterococcus faecalisplasmid from urban wastewaters. J Antimicrobial Chemother, 2017; 72 : 3245-3251.
3- Hajer Kilani, Mohamed Salah Abbassi, Sana Ferjani, Rakia Ben Salem, Riadh Mansouri, Noureddine Ben Chehida, Ilhem Boutiba-Ben Boubaker. Diverse Escherichia colipathovars of phylogroups B2 and D isolated from animals in Tunisia. The Journal of Infection in Developing Countries 2017; 11:549-556.
4- Khemiri M, Akrout Alhusain A, Abbassi MS, El Ghaieb H, Santos Costa S, Belas A, Pomba C, Hammami S. Clonal spread of methicillin-resistant Staphylococcus aureus-t6065-CC5-SCCmecV-agrII in a Libyan hospital. J Glob Antimicrob Resist. 2017 ;10:101-105.
5- Ben Salem R, Abbassi MS, García V, García-Fierro R, Fernández J, Kilani H, Jaouani I, Khayeche M, Messadi L, Rodicio MR. Antimicrobial drug resistance and genetic properties of Salmonella enterica serotype Enteritidis circulating in chicken farms in Tunisia. J Infect Public Health 2017. 10:855-860.
6- Abbassi Mohamed Salah, Zouari Mohamed, Hassen Bilel, Zniter Souhir, Dimassi Asma, Mansouri Riadh. ESBL/Cephalosporinase-producing Escherichia coli from retail poultry meat in Tunisia: Predominance of blaCTX-Mgene and multidrug resistance. J of Microbes and Microbiol Technic 2017; 1 (1): 102.
7- Meriam Ben Said, Mohamed Salah Abbassi, Paula Gómez , Laura Ruiz-Ripa, Senda Sghaier, Oussama El Fekih, Abdennaceur Hassen, Carmen Torres. Genetic characterization of Staphylococcus aureus isolated from nasal samples of healthy ewes in Tunisia. High prevalence of CC130 and CC522 lineages. Comparative Immunology, Microbiology and Infectious Diseases 2017, 51 : 37-40.
8- Meriam Ben Said, Mohamed Salah Abbassi, Paula Gómez, Laura Ruiz-Ripa, Senda Sghaier, Chourouk Ibrahim, Carmen Torres, Abdennaceur Hassen. Staphylococcus aureus isolated from wastewater treatment plants in Tunisia: occurrence of human and animal associated lineages. J Water Health, 2017, 15:638-643.
9- Mohamed Salah Abbassi, Hajer Kilani, Mohamed Zouari, Riadh Mansouri, Oussama El Fekih, Salah Hammami, Noureddine Ben Chehida. Antimicrobial resistance in Escherichia coli isolates from healthy poultry, bovine and ovine in Tunisia: A real animal and human health threat. Journal of Clinical Microbiology and Biochemical Technology, 2017, 3(2): 019-023.
2016
1- Abbassi Mohamed Salah, Debbichi Najwa, Mahrouki Sihem, Hammami Salah. Current epidemiology of non-β-lactam antibiotics-resistance in Escherichia coli from animal origins in Tunisia: A paradigm of multidrug resistance. Archives of Clinical Microbiology 2016. Vol 7. No 5: 29. DOI: 10.4172/1989-8436.100059
2- Ben Said M, Abbassi MS, Bianchini V, Sghaier S, Cremonesi P, Romanò A, Gualdi V, A H, Luini M. Genetic characterization and antimicrobial-resistance of Staphylococcus aureus isolated from bovine milk in Tunisia. Lett Appl Microbiol. 2016. 63:473-481
3-Nazek Al-Gallas, Mohamed Salah Abbassi, Becher Gharbi, Imen Boukef, Amna Al-Gallas, Monia Elbour, Ridha Mzoughi, Ridha Ben Aissa. Molecular study of Vibrio cholerae O1 Serotype Ogawa and Non-O1/139 isolated from the Environment in Tunisia. Journal of Microbiology and Antimicrobial Agents, 2016; 2 (2): 3-14
4-Elaa Maamar, Samia Hammami, Carla Andrea Alonso, Nouha Dakhli, Mohamed Salah Abbassi, Sana Ferjani, Zaineb Hamzaoui, Mabrouka Saidani, Carmen Torres, Ilhem Boutiba-Ben Boubaker. High prevalence of extended-spectrum and plasmidic AmpC beta-lactamase-producing Escherichia coli from poultry in Tunisia. International Journal of Food Microbiology, 2016. 231:69-75.
5- R. Ben Salem, M.S. Abbassi , V. Garcıa , R. Garcia-Fierro , C. Njoud , L. Messadi and M. Rosario Rodicio. Detection and molecular characterization of Salmonella enterica serovar Eppendorf circulating in chicken farms in Tunisia. Zoonoses and Public Health. 2016, 63: 320-327.
6- Rakia Ben Salem, Mohamed Salah Abbassi, Jean-luc Cayol, Amel Bourouis, Sihem Mahrouki, Marie-Laure Fardeau, Omrane Belhadj. Thermophilic Bacillus licheniformis RBS5 isolated from hot Tunisian spring co-producing alkaline and thermostable α-amylase and protease enzymes. Journal of Microbiology, Biotechnology and Food Sciences, 2016. DOI10.15414/jmbfs.2016.5.6.557-562.
7- Baâtour Olfa, Aouadi Mariem, Abbassi Mohamed Salah, Ben Nasri Ayachi Mouhiba. Chemical content, antibacterial and antioxidant properties of essential oil extract from Tunisian Origanum majorana L. cultivated under saline condition. Pakistan journal of pharmaceutical sciences. 2016, Vol.29, No.6 :1951-1958.
8- Debbichi Najwa, Abbassi Mohamed Salah, Sáenz Yolanda, Khemiri Monia, Majouri Dorsaf, Ben Rayena Chiheb, Ben Salem Rakia, Kilani Hajer, Ben Hassen Assia, Hammami Salah. Low antibiotic resistance rates and high genetic heterogeneity of Escherichia coli isolates from urinary tract infections of diabetic patients in Tunisia. J Chemother. 2016 ;28(2):89-94.
2015
1- Jaouani I, Abbassi MS, Ribeiro SC, Khemiri M, Mansouri R, Messadi L, Silva CC. Safety and technological properties of bacteriocinogenic enterococci isolates from Tunisia. J Appl Microbiol. 2015, 119:1089-1100.
2- Kilani H, Abbassi MS, Ferjani S, Mansouri R, Sghaier S, Ben Salem R, Jaouani I, Douja G, Sana B, Hammami S, Ben Chehida N, Boubaker I. Occurrence of blaCTX-M-1, qnrB1 and virulence genes in avian ESBL-producing Escherichia coli isolates from Tunisia. Front. Cell. Infect. Microbiol, 2015, 5:38. doi: 10.3389/fcimb.2015.00038.
3- Mahrouki Sihem, Hammami Salah, Mansouri Riadh, Abbassi Mohamed Salah. Overview of ESBL-producing Escherichia coli of animal origin in Tunisia: In the way of the global spread of CTX-M β-Lactamases. Archives of Clinical Microbiology. 2015. Vol 6. No 2: 4
4- Baâtour Olfa, Aouadi Mariem, Dhieb Cyrine, Abbassi Mohamed Salah, Sadfi Najla, Ben Nasri -Ayachi Mouhiba. Screening for antifungal activity polyphenol content of Origanum majorana L. essential oil treated and non treated with salt. International Journal of Advanced Research. 2015. Volume 3, Issue 5, 570-574
5- A. Gritli, T. Daboussi, M. Ben Moussa, M.S. Abbassi. Prevalence and characterization of Salmonella in chicken consumed in military cantines. Journal of new sciences, Agriculture and Biotechnology 2015, JS-INAT (12), 908-914
6- A. Gritli, I. Belkahla, M. Ben Moussa, M.S. Abbassi. Occurrence and characterization of Escherichia coli in raw lettuce consumed in a military hospital. Journal of new sciences, Agriculture and Biotechnology 2015, JS-INAT (11), 899-907.
2014
1- Imen Jaouani, Mohamed Salah Abbassi, Valentina Alessandria, Jihen Bouraoui, Rakia Ben Salem, Hajer Kilani, Riadh Mansouri, Lilia Messadi, Luca Cocolin. High inhibition of Paenibacillus larvae and Listeria monocytogenes by Enterococcus isolated from different sources in Tunisia and identification of their bacteriocin genes. Letters in Applied Microbiology. 2014. 59 (1):17-25.
2- Hela Lamine-Khemiri, Remigio Martínez, Waldo Luis García-Jiménez, Jose Manuel Benítez-Medina, Maria Cortés, Inés Hurtado, Mohammed Salah Abbassi, Imed Khazri, Mohammed Benzarti, Javier Hermoso-de-Mendoza. Genotypic characterization by spoligotyping and VNTR typing of Mycobacterium bovis and Mycobacterium caprae isolates from cattle of Tunisia. Trop Anim Health Prod. 2014, 46(2):305-311.
2013
1- Leila Soufi, Yolanda Sáenz, Laura Vinué, Mohamed Salah Abbassi, Salah Hammami, Carmen Torres. Characterization of Pc promoter variants of class 1 integrons in Escherichia coli isolates from poultry meat. Foodborne Pathogens and Disease. 2013, 10 (12):1075-1077.
2- Nazek Al-gallas, Mohamed Salah Abbassi , Becher Gharbi , Moulka Manai, Mohamed N Ben Fayala Raghda Bichihi, Amna Al-Gallas, Ridha Ben Aissa. Occurrence of plasmid-mediated quinolone resistance determinants and rmtB gene in Salmonella enterica serovar Enteritidis and Typhimurium isolated from food-animal products in Tunisia. Foodborne Pathogens and Disease. 2013, doi:10.1089/fpd.2012.1466.
2011
1- Leila Soufi, Yolanda Sáenz, Laura Vinué, Mohamed Salah Abbassi, Elena Ruiz, Myriam Zarazaga, Assia Ben Hassen, Salah Hammami, Carmen Torres. Escherichia coli of poultry food origin as reservoir of sulphonamide resistance genes and integrons. International Journal of Food Microbiology, 2011; 144: 497-502.
2- Leila Soufi, Yolanda Sáenz, María de Toro, Mohamed Salah Abbassi, Beatriz Rojo-Bezares, Laura Vinué, Ons Bouchami, Arabella Touati, Assia Ben Hassen, Salah Hammami, Carmen Torres. Phenotypic and genotypic characterization of Salmonella enterica isolated from poultry meat in Tunisia and identification of new genetic traits. Vector-Borne and Zoonotic Diseases, 2011; 12: 10-16.
3- Hajji W, Hamdi H, Mehri W, Bouzgharou N, Charfeddine L, Belarbia M, Lengliz-Ben Rayana S, Abbassi M.S. Antibiorésistance de souches aviaires d’Escherichia coli isolées dans la région du Sahel Tunisien : Résultats préliminaires. Bulletin vétérinaire 2011. N28: 7-8
4- Ben Aissa H, Zaouchi H, Khanfir L, Limam L, Lenglize-Ben Rayana S, Hamdi H, Abbassi M.S. Production de bactériocines par des souches d’Enterococcus spp. isolées à l’IRVT : Spectre d’action antibactérienne et antifongique et perspectives. Bulletin vétérinaire 2011. N28: 4-6.
2010
1- Mohamed Salah Abbassi, Elena Ruiz, Yolanda Sáenz, Arij Mechergui, Assia Ben Hassen, Carmen Torres. Genetic background of quinolone resistance in CTX-M-15 producing Klebsiella pneumoniae and Escherichia coli strains in Tunisia. Journal of Chemotherapy, 2010; 22: 66-67.
2009
1- Leila Soufi, Mohamed Salah Abbassi, Yolanda Sáenz, Laura Vinué, Sergio Somalo, Myriam Zarazaga, Asad Abbas, Rafika Dbaya, Latifa Khanfir, Assia Ben Hassen, Salah Hammami, Carmen Torres. Prevalence and diversity of integrons and associated resistance genes in Escherichia coli isolates from poultry meat in Tunisia. Foodborne Pathogens and Disease, 2009; 6 (9): 1067-1073.
2- Mohamed Salah Abbassi, Arabella Touati , Wafa Achour, Ahmed Cherif , Sami Jabnoun, Naima Khrouf, Assia Ben Hassen. Stenotrophomonas maltophilia responsible for respiratory infection in neonatal intensive care unit: Antibiotic susceptibility and molecular typing. Pathologie Biologie, 2009; 57 (5): 363-367.
3- Abbassi Mohamed Salah, Achour Wafa, Ben Hassen Assia. Enterococcus faecium isolated from bone marrow transplant patients in Tunisia: High prevalence of antimicrobial resistance and low pathogenic power. Pathologie Biologie, 2009; 57: 268-271.
4- Intissar Guedda, Rafika Debya, Mohamed Salah Abbassi, Leila soufi, Assia Ben Hassen, Salah Hammami. Phenotypic and genotypic typing of Salmonella enterica serovar Enteritidis isolates from poultry farms environment in Tunisia. Annals of Microbiology, 2009; 59 (2): 373-377.
2008
1- Abbassi Mohamed Salah, Carmen Torres, Achour Wafa, Laura Vinué, Yolanda Sáenz, Daniela Costa, Ons Bouchami, Ben Hassen Assia. Genetic characterisation of CTX-M-15-producing Klebsiella pneumoniae and Escherichia coli strains isolated from stem cell transplant patients in Tunisia. International Journal of Antimicrobial Agents, 2008 (32) 308-314.
2- Abbassi Mohamed Salah, Bouchami Ons, Touati Arabella, Achour Wafa, Ben Hassen Assia. Clonality and occurrence of genes encoding antibiotic resistance and biofilm in methicillin-resistant Staphylococcus epidermidis strains isolated from catheters and bacteraemia in neutropenic patients. Current Microbiology. 2008, 57: 442-448.
3- Bouzaiiane O, Abbassi MS, Gtari M, Belhaj O, Jedidi N, Ben Hassan A, Hassen A. Molecular typing of staphylococcal communities isolated during municipal solid waste composting process. Annals of Microbiology. 2008. 58: 387-394.
2007
1- Abbassi Mohamed Salah, Achour Wafa, Ben Hassen Assia. High-level gentamicin-resistant Enterococcus faecium strains isolated from bone marrow transplant patients: accumulation of antibiotic resistance genes, large plasmids and clonal strain dissemination. International Journal of Antimicrobial Agents, 2007; 29: 658-664.
2- Abbassi Mohamed Salah, Znazen A, Fawzia Mahjoubi, Adnan Hammami, Ben Hassen Assia. Emergence of vancomycin-resistant Enterococcus faecium in Sfax: clinical features and molecular typing. Médecine et maladies infectieuses, 2007 (37) 240-243.
3- Nazek Al-Gallas, Mohamed Salah Abbassi, Assia Ben Hassen, Ridha Ben Aissa. Genotypic and phenotypic profiles of enterotoxigenic Escherichia coli associated with acute diarrhea in Tunis, Tunisia. Current Microbiology. 2007, 55(1):47-55.
4- Kalai Blagui Souad, Achour Wafa, Abbassi Mohamed Salah, Bjaoui Mohamed, Ben Abdeladhim Abdeladhim, Ben Hassen Assia. Nosocomial outbreak of OXA-18-producing Pseudomonas aeruginosa in Tunisia. Clinical Microbiology and Infection, 2007. 13: 794-800.
2006
1- Wafa Achour, Mohamed Salah Abbassi, Ahmed Cherif, Naima Khrouf, Sami Jabnoun, Assia Ben Hassen. Épidémie d’infection respiratoire à Pseudomonas aeruginosa O:12 résistante à l’imipénème dans une unité de réanimation néonatale à Tunis. Pathologie Biologie, 2006; 54:596–599.
2- Chaieb Kamel, Touati Arabella, Abbassi Mohamed Salah, Ben Hassen Assia, Mahdouani Kacem, Bakhrouf Amina. DNA fingerprinting of a multi-resistant coagulase-negative staphylococci isolated from biomaterials in dialysis services. Archives of Medical Research, 2006 ; 37 : 953-960.
3- Garbaa Nadia, Mokhtari Wafa, Gharbi Houda, Abbassi Mohamed Salah, Ben Hassen Assia, Aouni Mahjoub, Gharbi Ali. Détection et caractérisation des souches de Listeria monocytogenes dans le gouvernorat de Nabeul. Microbiol. Hyg. Alim. Vol 18, N° 15- Mars 2006 ; p18-28.
2005
1- Kamel Chaieb, Abbassi Mohamed Salah, Touati Arabella, Ben Hassen Assia, Mahdouani Kacem, Bakhrouf Amina. Molecular characterization of Staphylococcus epidermidis isolated from biomaterials in a dialysis service. Annals of Microbiology, 2005; 55 (4): 307-312.
2004
1- Abbassi Mohamed Salah, Achour Wafa, Ben Hassen Assia. Caractéristiques des souches d’entérocoques isolées chez des patients neutropéniques au centre national de greffe de moelle osseuse de Tunis. Bulletin de la Société de Pathologie Exotique, 2004 ; 97 (2) : 91-94.
Genes and DNA sequences in GenBank
1- Abbassi Mohamed Salah, Torres Carmen, Achour Wafa, Vinue Loura, Saenz Youland and Ben Hassen, A. Genetic characterization of extended-spectrum beta-lactamases (SHV103) in clinical Klebsiella pneumoniae strains from a Tunisian hospital. GenBank Accession no. EU032604.
2- Soufi L, Saenz Y, Abbassi M.S, Vinue L, Zarazaga M, Hammami S, Torres C. Prevalence and diversity of integrons and associated resistance genes in Escherichia coli isolates from poultry meat in Tunisia. GenBank Accession no. FJ160769.
3- Soufi,L., Saenz,Y., de Toro,M., Abbassi, M.S., Rojo-Bezares,B., Vinue,L., Bouchami,O., Touati,A., Ben Hassen,A., Hammami,S. and Torres,C. Salmonella enterica subsp. enterica serovar Schwarzengrund strain S7 class 1 integron In150, partial sequence. GenBank Accession no. HQ874651.
Detection of two new spoligotypes in two strains of Mycobacterium bovis recovered from cow in Tunisia (http://www.mbovis.org/spoligodatabase/singlepattern.php)
1- - Spoligotype pattern : 0100000000000000111111111010100001111100000
- Name of the spoligotype : SB2024
- Hexacode : 20-00-1F-7A-87-60
2- - Spoligotype pattern : 1100011101111110111111011111011111111100000
- Name of the poligotype : SB2025
- hexacode : 63-5F-5F-5F-7F-60
I am doing comet assay for gills of fish, the fish were exposed to pesticides primarily.The problem i am facing that the cells are not picking stain.Can anyone tell that while using acrydine orange in order to stain DNA of gills.which concentration we should use?
can we use different digestion protocols ?
Like for water and sediments, it is used con. NaCl and for fishes NaoH and HNO3.
I have a case in my field research
I want to know the consistency of the fish troops at Market X
I recorded data for 7 days (from August 11 to August 17) regarding:
(A) Fish sold by traders at Market X
(B) Fish purchased by consumers at Market X
The respondents I interviewed were 30 traders at Market X
I conducted a census of the same 30 traders for 7 days (from August 11 to August 17) regarding:
(A) Fish sold by traders at Market X
(B) Fish purchased by consumers at Market X
What analysis is suitable to be used to provide an overview of the consistency of fish supply in Market
A phenomenon that is clearly visible from the census results is that the types/variations of fish purchased by consumers are less than the supply of types/variations of fish sold by traders.
Do any of you have a case like mine?
Hi everyone,
i might have a dumb question... my fish cells keep detaching and dying after a few days of culture so no i am trying to find a solution to this problem.
They grow at 19°C without CO2. I only have experience with mammalian cells. I bought a new incubator, which has no extra water tank. Now my question is: Do i need to place a tray or something in the incubator, even if the cells grow at low temperature? Might this be the reason they keep dying?
I need to extract the liver from frozen Emerald rockcod and sequence its RNA. To keep the RNA stable and prevent degradation, I would like to avoid thawing the fish for the dissection. However, I haven't been able to find any methods that keep the fish frozen. Does anyone have any tips on how to best achieve this?
Some amazing articles I've read and it seems Maxent is really doing well for Marine fish species and also in cases with few distribution points, Am I right?
-Purpose of the study: finding potential habitat suitability for some intertidal marine fishes.
-Situation: the selected species have few distribution points (8-35 points) because of a lack of studies and fieldwork and also most of them are cryptic small fishes (so their distribution can be much wider)
Question: I want to use worldwide scale layers for the SDM (BioOracle layers), does it have any technical problem not to crop the layers into smaller regions (Like Indian Ocean) and do the SDM for the whole world?
Appreciate your help
Dear researchers and experts, I need some guidance about the identification key of fish. For references, the following is an attached example.
More over, I also need identification keys of Tariqilabeo latius and Tor putitora.
Hi!
I am quite a novice in the field of fish ethological research. I am looking for a step-wise guide for parameter choice and data analysis. Especially the movement tracking and behavioural toxicology data acquisition and analysis.
There seems to be very little to no information about this fish and threats towards its social behavior that takes a huge role on the health of coral rife ecosystems, with the increase of global temperature O2 solubility drops creating conditions of hypoxia
Here we see in the first video a very strong house with dynamic walls that simply presses against the seismic base just as buildings today simply press against the ground, which at the slightest shift tends to topple over entirely. Why does it topple and not break in two? Because the walls are very strong, stronger than the unsupported loads of the building.
A tipping moment in one direction rotates the building around on itself and another opposite direction moment coming from the now unstable static loads of the building suspended in the air oppose each other. If the cross-sections of the vertical walls can withstand this contrast of moments, then the structure will either overturn or return to its original position intact without damage. If they do not, it will be cut in two.
See video that withstood the two opposing moments. https://www.youtube.com/watch?v=Ux8TzWYvuQ0
If we bolt the same building onto the seismic base or onto the ground, then it will neither topple nor lose its support from the ground so there will be no opposing moment from the unstable static loads since it will not topple. So nothing will happen to it or it will not tip over. See video https://www.youtube.com/watch?v=Q6og4VWFcGA
Now let's remove the strong walls and leave it with weaker corner walls and a beam at the top, and do the same experiment again without bolting it to the seismic base or ground.
We will see after some oscillations that the contrast of the two moments coming from the overturning moment and the unsustainable static loads broke both the beam and wall sections on the node.
Let's now repeat the last experiment with the corner walls and the large beam on the roof but bolting the wall faces to the seismic base or to the ground to see if it will break again as the previous one did.
Not the slightest damage, although the acceleration that shook it was three times the acceleration of the other one that broke.
Conclusion
If we bolt the building to the ground, then even during the earthquake it does not lose the support of the ground so its own unsustainable loads that broke it no longer break it because the ground supports them.
Civil engineers will say that their own buildings don't rise from the ground either.
That is correct.
But they don't lift not because there is no overturning moment in their own buildings but because the weak cross-sections of the beams are unable to lift the structure in the air and they break before they lift it like a reed breaks when a big fish bites it.
The house is not destroyed by the earthquake but by its own weight resisting the rotation of the momentum.
If you bolt it to the ground the overturning moment is deflected into the ground and the structure will not be damaged.
If the fish bites a little then the reed beam will get away with it due to the fact that it has some elasticity.
If the bite is sharp and strong it will break
I apologize in advance as I am new to community data analysis.
I am currently analyzing differences in fish assemblages due to temperature extremes. I am looking at data over multiple years(the years were chosen based off the avg. temperature of that given year-looking at the warmest and coldest years from a larger dataset).
I chose three sampling sites within a a single bay, the sites are used as replicates for my analysis.
I am interested in determining if the assemblages have a significant difference between the years. The response variable is the counts of each species of fish collected. The ultimate goal would be to determine if there is any difference between assemblages in a given year and is it the significant difference occurring between a warm and cold year. Univariate biodiversity tests(richness, Shannon, etc.) were calculated as well as SIMPER to determine which species were contributing most to given results.
I am also looking at counts of the given years over multiple months but will be keeping months separate from one another (i.e August 2000-2010 data analysis is separate from September 2000-2010 data analysis).
I will be using R for my statistical program; but my question is which analysis is appropriate to use to test for significance. My only factor seems to be (year) so i am not sure if this is considered multivariate even in this case and if ANOSIM is even appropriate.
I would appreciate any feedback or constructive criticism at this point as I am pretty new to multivariate studies.
I have a dataset with piles of fish and I'd like to implement an object detection algorithm by using rotated bounding boxes. Any suggestions with available (github) code?
how pesticides affect on fish Genotoxic (DNA damage)
I am interested in determining fish morphometrics by TRUSS network. Now how can I extract length/measurements by PAST software amonglandmarks on fish generated by tpsDig2 software? Can you please guide/recommend me any document/ manual/ link to some tutorial.
Thank you i anticipation.
I have extensive tag recapture data and length frequency distributions for two species of Turbinid snails from 8 sites and I need a research partner for combining the length frequency and tagging data.
Looks for ideas or methods for spiking heavy metal salts on or in fish pellets.
Has an done this or have methods on this?
I need to isolate RNA from fish eggs and fish tissues.
This is my first time dealing with fish samples.
Can anyone help me out.
Hi everybody,
here i am with another question. I am working with adherent fish cells but i am now facing the problem, that the cells are detaching after a few days. After seeding, the cells attached fine, they strech and grow fine also. But for example today, on day 7, i find a lot of detached, round cells in suspension. They do not look like dead cells. In my experience, dead cells are more like round, dense, glowing dots (kind of like freshly seeded cells). But these cells i found today, the look like little balloons. Like a blown up cell with a thin skin floating around the media. Also on some attached cells you can see some arms starting to detach.
I really don´t know why they start to grow fine, and after some days they all just detach and don´t grow anymore. I change part of the media regularly so they are not starving.
I would be very grateful for your help!
Thank you so much in advance
Anika
This is a histologic picture of the spermatheca of a male fish, what is this part of the picture in red?
If the species is least concern according to IUCN red list, then why we go for mt-gene sequencing? What will be the usefulness for the species after research? Would it be the useful research or we should go for some other research topic?
From your experience, how could I collect blood from such small fish?
I want to study the effects of algae as additive in fish feed , should i do analysis of the additive before mixing with the feed materials or after mixing?
My area of research is regarding dietary supplementation of nanomaterials to the fingerlings and studying the growth influence of the respective nanomaterial in fingerlings. so I doubt what enzymes should be studied in the enzymatical analysis.
I am working on skin coloration of koi carp.
We are working on salmonid fish eggs and would like to isolate RNA from them. The samples of eggs are stored on -80C, but the individual sample is too big (too many eggs in tube for a single isolation) and needs to be aliquoted somehow. Does anyone have a suggestion how to aliquote and store samples to avoid negative effects of freeze thaw cycles on eggs and RNA? We would like to keep the rest of the eggs for potential additonal RNA isolation.
Thank you!
Simona
What are the abiotic and biotic factors of water necessary for fish life and important abiotic features of an aquatic ecosystem?
AA. I have an inquiry to you. I have filtered water, sediment and fish different parts.... Now microplastic are on filter paper.
Shall I send you filter paper as such for analysis of chemical composition through FTIR etc,,
What are the fish feeds available in the world and India? Which is the number one brand and Why?
Dear community,
I recently experience increasing mortality in my zebrafish,
Starting as early as 8 days post hatch but sometimes even later fish show abnormal swimming behaviour.
They swim in circles or spin around their axis head downwards. Fish showing these symptoms die within days.
Using a binocular I cant identify deformations or any morphological abnormalities.
I already tried different fish origins, feeding protocols and water analysis was also ok.
I am looking forward to your ideas. Thanks in advance.
I'm looking for an researcher who had previously worked on allometric growth of fish and can contribute to a paper (as a co-author) I have almost completed
A book focusing on the subject of Dry Fish is being proposed for publication by Springer. The book will cover various topics of interest, which may include but are not limited to:
Dry fish as a healthy food; Dry fish and its contributor to food and nutritional security; Traditional and advanced methods of fish drying; Different types of dry fish products: a country's perspective; Dried fish and its role in the global economy; Biochemical composition of dry fish; Effect of different methods of drying on nutrient composition of fish; Physical, chemical, and microbiological changes associated with dry fish; Different packaging methods and materials for dry fish; Socio-economical perspective of dried fish value chains; Dry fish market and marketing channels: a global perspective
Please send your expression of interest to contribute to the mentioned book chapter by emailing [email protected]. This invitation is extended to experts, entrepreneurs, and authors.
To investigate the effect of pollutants in the water environment (such as: microplastics, silver particles, etc.) on the performance of fish (such as: Nile tilapia) in a short period of one month, it is better to add pollutants to the water or to feed?
I am running the code below in rstudio-
library(mlogit)
data("Fishing", package = "mlogit")
Fish<-mlogit.data(Fishing, varying = c(2:9), shape = "wide", choice = "mode")
m<- mlogit(mode ~ 0|income, reflevel = "beach", data = Fish)
summary(m)
And getting the output showed in the attached image.
In the above code, if I want to fix the coefficient of income:charter as zero or if I want to omit income:charter from the model as it is not statistically significant, what modifications should I have to make in the above code? Making income:charter coeff zero or omitting income:charter from the model must affect the other parameter values. They should not be the same when income:charter exists in the model.
Thank you.
Especially among P. latipinna, P. mexicana, P. formosa
Dear All,
does anybody aware about any program / R-script, R-package that estimate production / biomass ratio from known life history parameters of growth and mortality and might be applied to a particular size/age range? Many thanks in advance,
Vlad
Hello! I am curious about the minimum hybridization time for the custom locus-specific probes for FISH. I know that it should take at least 12 hours at 37 degrees Celsius, but is there an even lower threshold when you can get results?
I am trying to localise microbes inside the beetles using FISH. Is it possible to use the probe sequences used in Taqman q-PCR protocol for specific microbes in FISH study?
I want to know the current permissible levels of Cu, Fe, and Zn allowed in the food fish as recommended by WHO and National Environmental Standards and Regulations Enforcement Agency in Nigeria (NESREA)
Hi. We have fish eggs that have been fixed in 95% ETOH at room temperature for 1-2 years. Can these still be used for genetic barcoding? Thank you.
I'm on a research on this topic: Parasitological analysis of smoked dry fish sold in the market.so I want to know the methods needed to identify these parasites in smoked dry fishes
Hello while doing VPA analysis in TrophFish R it requires a terminal F value.
Does anyone know how we can calculate this value?
Thanks
Genetic Variation is Essential for Evolution by Natural Selection. For natural selection to occur, a population must have a wide variety of individuals with different traits. For example, natural selection would not influence fish body color if all individuals in a population were exactly the same color. Variability is essential for natural selection to work. If all individuals are the same on a given trait, there will be no relative difference in their reproductive success because everyone will be equally adapted to their environments on that trait.
I am working on environmental toxicology on fish and mice, so I need assistance with protocol and analysis of TUNEL assay for apoptosis.
Fish osteology is the study of skeletal structure of fish.
I am evaluating the isolated and combined effects of two stressors on physiological and biochemical parameters of fish. I analyzed different markers (eg antioxidant enzymes, DNA damage, histopathological damage...) and would like to know what kind of interactive effect occurs when fish are co-exposed to the two stressors. How can I determine if the interaction was additive, antagonistic or synergistic for these kind biomarkers??
This weekend Retraction Watch asked attention for the astonishing message that “A journal publishes a paper by Victoria Braithwaite, who is known for showing fish can feel pain…and who died in 2019.” (see enclosed file for the ‘paper’). (https://retractionwatch.com/2023/04/15/weekend-reads-plagiarism-allegations-swirl-around-superconductor-scientist-the-ice-cream-studies-no-one-wants-to-talk-about-when-fraud-doesnt-pay/#more-126917)
It redirects you to the following link:
https://twitter.com/RetractionWatch/status/1646547143149203456 One of the comments indicated that the paper title is stolen from https://www.sciencedirect.com/science/article/abs/pii/S0141113617307390
The journal behind it is “Journal of Aquaculture Engineering and Fisheries Research”
I am designing a formula for fish feeding includes bread yeast. Can I use the types in the market, or should I use the pure chemical form?
Amino acid fertilisers are a real alternative to chemical NPK fertilisers.
They can stimulate soil and leaf microbial population; hence they help increasing organic matter and soil aeration, they pollute less as they supply plants with slow released nutrients (including a burn-free nitrogen, and other valuable nutrients), etc.
There are many different sources of by-products to manufacture an amino acid fertiliser. Other than fish, it can be the leftovers from abattoir, corn syrup, soybean, vegetable “waste”, etc.
I am convinced that fish emulsion is the most advantageous of them for soil and plant growth, but I would like to find scientific reasons the demonstrate it.
Can you please help me to find the differences between fish emulsion and any other amino acid fertiliser? Can you share with me a research paper that points into that direction?
Thank you very much for your help.
These bones come from a Pleistocene archaeological site located in Timor-Leste near Lake Ira Lalaro. Freshwater and marine fish remains have already been identified at this site. We have a few ideas that are not very conclusive. If you have any clues, don't hesitate. Thanks !
Hello dear friends
I want to make a neuro fuzzy expert system for Fishery industry.
But my field of expertise is not connected to Fishery.
So please help me to find all kind of Commercial fish species.
Thank you
I am panning to collaborate with a colleague who is in a remote part of Africa, where he will collect fish samples for DNA extractions. There is no reliable electric supply and shipping may take months. Is there any suggestions about a preservative that can be used for preservation, which can be stored at room temperature for 3 - 6 months without degrading the DNA.
Hello, last year the production of one antibody for DIG labeled probe amplification was canceled. So now, we are left with just biotin amplification.
Do you know of any other way to amplify a DIG signal based on the same/similar principle?
Thank you very much for the advice.
how we check the age of the sturgeon fish without sacrificing them?
Howdy folks,
I will be teaching a study abroad course in Costa Rica this summer (Caribbean side). My main research project with students will focus on freshwater turtles, but we anticipate capturing a number of fish species as by-catch. I think it would be useful to document and photograph the fish we do catch, but as a turtle jockey.... I'm not too confident in my fish knowledge...especially in Central America.
Would anyone have any recommendations on books, papers, or other sources that might provide some keys or photo plates of fishes in the region? They would be greatly appreciated!
Thanks!
Dear colleagues,
I need a laboratory for the phylogenetic study of fishes, I have a new species that has never been identified before, so please could anyone of you guide me ?
By the way, it's a new fish in northern Algeria.
I hope I could find help from you!
Thank you in advance
Hi,
I would like to make a granul that includes H. sabdariffa powder and i am searching for a food such as "Fish Breed-M" available with INVEaquaculture. It is a powdered broodstock diet that incorporates highly refined and digestible raw materials, making this dry mix perfectly suitable as a stand alone feed. Mixed with water, the powder can be made into a stable moist paste or moist sausages because of ingredients with specific binding capacities.
However, this powder is for broodstock. I would like to find one for juvenil (1g)
Thank you for your answer.
I am having troubles to identify this species.
It was collected from a freshwater stream in Andaman group of islands.
Hello! I wanted to know the difference between marine and freshwater specimens of a particular species of euryhaline fish using gene expression analysis of its osmoregulatory gene. My question is do I need to grow a fish in a tank with varying salinities (marine vs freshwater) in order to perform this experiment? or can I just get specimens of the fish directly from the freshwater environment and from the marine environment and then immediately subject them to RNA analysis? Thank you!
Hello!
I am currently conducting some research studies by using zebra fish embryo assay. may I know the Fish inspector software reliable? Does it produce statistically reliable data? what are the morphologies that can we assess using this software and can we identified teratogenic effects?
Could you developmental biologists help me? When injecting cancer cells into the perivitelline space of zebrafish embryo (48 hpf) and growing them 3 days (+34 degrees), what structure/location of the adult fish is that location most resembling for?