Science topic

Fish - Science topic

Explore the latest questions and answers in Fish, and find Fish experts.
Questions related to Fish
  • asked a question related to Fish
Question
1 answer
The processing of fish into meal and oil is quite straightforward: fish is an input and fishmeal and oil comprise output. Thus, there is the input of protein and lipids by fish. And there is also output of protein (by fishmeal) and lipids (fish oil and fishmeal). If the processing were a perfect and closed system, there would no technological losses and the output of protein by fishmeal and the output of lipids by fish oil and fishmeal would be equal to input of protein and lipids by fish.
In real life, the processing is not a completely perfect system and some losses (e.g. evaporation, rinsing) likely occur. How large or small are approximately these losses of protein and lipids if the output is compared with the input? Perhaps, someone has made calculations of “protein balance” and “lipids balance”.
My guess is that these losses should be fairly low as the modern processing of fish is efficient. However, I am not an expert in this field. I would appreciate estimates and opinion of more knowing people.
Best regards,
Alberts Auzins
Relevant answer
Answer
Honoured
Alberts Auzins!
In addition to fish meal and fish fat, it is possible to obtain pearl pate from fish scales, which is an initial component for the production of pharmaceutical substances such as acyclovir and others. The issue of the yield of finished products is improving with each new stage of production technology.
  • asked a question related to Fish
Question
2 answers
It's not a question, but if anyone has a photo of the eggs of the fish called Harpagifer bispinis, please share it with me.
Relevant answer
Answer
Maybe DEI could help us find someone with the eggs. I wrote this for DEI: https://www.researchgate.net/publication/380427514_Kalergi_and_Hart-Cellerand_Memetics_White_Antifragility
  • asked a question related to Fish
Question
1 answer
Analysis of Microplastics
Relevant answer
Answer
I recommend the H2O2 and low temperatures or perhaps
dry the tissue and mill it if you want just the concentration of MPs in the tissue
but you need to consider the thermal and chemical effects on polymers. .........................
  • asked a question related to Fish
Question
1 answer
Which of this techniques can give us the best result in detection of chromosomal abnormalities
Relevant answer
Answer
Hi
depends on skills and money you got and what you're searching for...FISH is OK, array CGH is better, and WGS is far resulting
all the best
fred
  • asked a question related to Fish
Question
1 answer
Calling All Fish Biologists,
Myself, Dr. Marty Hamel with the University of Georgia and fellow biologist from North Carolina, Kevin Dockendorf are in the process of hopefully pulling together a standard weight equation and standard length categories for the Flier (Centrarchus macropterus). Georgia has a popular and very abundant population of Flier residing in the Okefenokee Swamp. North Carolina also has several well established coastal populations from the Dismal swamp all the way down to South Carolina . Flier typically inhabit low PH, typically very acidic, tannic, blackwaters and can live in lakes, rivers, backwater swamps, creeks. Kevin recently helped put together a excellent video with Carolina ALL OUT on North Carolina Flier fishing. See the link: https://www.youtube.com/watch?v=jGwyoX_B2DU
The Flier is found in the southern part of the United States along the Atlantic seaboard from the Potomac River drainage in Maryland, where it was most likely introduced down to central Florida. It is then found along the Gulf of Mexico drainages as far west as the Trinity River, Texas, and then north in Mississippi River system to above the fall line in southern Illinois and southern Indiana.
📷
We are looking for TL (mm) and weight (g) data in the following 16 states (FL, GA, SC, NC, MS, TX, ILL, IND, KY, AL, ARK, OK, MZ, TN, VA, MD).
We prefer data that has a associated date and GPS coordinates, to help us fill out the data distribution map for the eventual manuscript.
This equation would come in handy for university and agency field staff when attempting to assess proper condition and size structure of any Flier population needing to be managed.
We are not in a rush to secure data, as this is typically a year-long process of pestering folks until they find the time to dig up the data or even go and try to catch some data (either with electrofishing or better yet hook and line!).
We would like each population to have a minimum of 10 fish but will take whatever you can provide, with populations of 30 to 50 being preferred but we will take as high a number of fish and as many populations as you want to give us. More data is definitely better! We would rather not bootstrap, if we don’t have too.
We realize some of these states will not have enough fish in the data set. Just send what you have and we will determine if you have enough we can work with.
If your agency has a centralized area where data is stored that is probably the best place to look for this data and send this request to them.
Feel free to forward this request to a biologist in your state that may have data separate from a statewide database. As I have learned the hard way in the past, not all agencies or universities have one centralized location to report data too.
We sincerely thank you for your time,
Tim Bonvechio
Relevant answer
Answer
Still looking for more Flier data, especially for Texas, Louisiana, Mizzouri, & Mississippi.
  • asked a question related to Fish
Question
2 answers
Dear All,
I have an imagery with a single fish species within each image along with a list of morphometric measurements of the fish (length, width, length of tail, etc). I would like to train a CNN model that will predict these measurements having as input only the images. Any ideas what kind of architecture is ideal for this task? I read about multioutput learning, but I haven't found a practical implementation in Python.
Thank you for your time.
Relevant answer
Answer
Thank you Aldo for your suggestion. I can see the general framework.
Cheers!
  • asked a question related to Fish
Question
2 answers
I'm working with Fish catch in the Amazon, however there's no data available on the fishing vessels, fishing days or number of fishermen involved. I would like to know different approaches to standardize the monthly fish catch
Relevant answer
Answer
Hi Daniel,
Standardization of monthly fish catch without any data on fishing effort (vessels, days, fishermen) is tricky, but there are a few approaches that you can consider:
· Monthly average: Since months have different lengths, dividing the total catch by the number of days in the month provides a basic standardization. However, this doesn't explain the seasonal variations in fish abundance or the effort put into fishing activity.
· Comparison to the historical data: If you have historical catch data for the Amazon fishery of the location of interest, you can calculate the average catch for each month over a defined period (e.g., past 5 years). Then, visualize the trend of the current month's catch as a percentage of the historical monthly average. This approach accounts for seasonal variations but may not be ideal if fishing pressure has significantly changed with time.
· Environmental data: Fish abundance can be influenced by environmental factors like water temperature, salinity, or land runoffs. With such data, you might be able to establish correlations between these factors and historical catch data. This allows you to estimate a "baseline" catch expected for certain environmental conditions and compare the current month's catch to that expectation.
· Indigenous knowledge: Consulting with indigenous and local fishers can provide valuable insights. With their experience, they might be able to explain seasonal patterns in fish abundance or fishing activity that can be used to adjust the catch data for better comparability between months qualitatively.
The results might not be as statistically robust as those obtained with standardized Catch Per Unit Effort (CPUE), but it might give you some insight into the trend.
  • asked a question related to Fish
Question
2 answers
How are warming ocean temperatures impacting fish and other marine mammals and difference between ocean currents and water mass?
Relevant answer
Answer
Hi, small opening remark, fish are not 'other marine mammals'. Fish and other gill breathing animals are strongly affected by water temperature, irrespective of the origin. First of all, fish, except big tuna, have environment temperature, not a fixed one around 36°C like mammals. The proteins of fish adapted to high latitudes function best in cold or cool waters, where disolved oxygen tends to be much higher than in warm, tropical waters.
As gas exchange in water breathing animals is much more energy intensive than air breathing, fish must expend a large part of their energy budget on breathing. Moreover, gills are surfaces, while the body of fish will grow in volume. At some point, the surface limitation of gas exchange through the gills will not allow fish to transform food into own body cells because of lack of oxygen supply. This is why fish species in the warmer part of their distribution range attain a lower maximum size than in the cooler part of their distribution range. It has also been observed, that e.g. salmon can grow a bit more after spawning (spawning reduces body weight requiring oxygen supply). This gill-oxygen limitation theory (GOLT) proposed by Pauly also explains why we observe polewards migrations of fish species as the ocean surface waters warm. They want to remain within their preferred temperature range - if they can. It means also that tropical regions loose species without replacement because it's becoming too warm (oxygen too low, even without overfishing), while temperate and polar regions gain, at least temporarily. But cold adapted animals may be at risk, e.g. mass mortality of snow crabs in the rapidly warming Arctic. Air breathing marine mammals are not affected by this phenomenon, except indirectly in that they prey species may move as a result of a warming ocean.
  • asked a question related to Fish
Question
3 answers
What are the best practices for selecting environmental variables in ecological niche modeling for coral reef fish species?
Relevant answer
Answer
A priori selection based on a mechanistic explanation of a species niche "preferences" is advised. Selection procedures via p-values (backward and/or forward selection), dropping "insignificant" variables, AIC (or BIC) are not proper statistical approaches for selection and are all somehow "related" so result in problematic conclusions see the sources (https://royalsocietypublishing.org/doi/10.1098/rspb.2023.1261, https://www.tandfonline.com/doi/full/10.1080/09332480.2018.1549817 or see F. Harrell's book
A niche could be defined as some abstract multivariate space constructed by univariate vectors under which a taxon was observed. I see no need to select a variable perse, because a niche does not imply "causality", unless defined otherwise ofcourse. If you have too many variable you could start by addressing why a particular variable would be of interest for a species occupation of this space. Ofcourse in ecology we often deal with indirect relations so one could "explain away" every relation and by some model selection it tends to become tricky and we likely end up with a spurious relation (e.g., https://www.sciencedirect.com/science/article/pii/S0022316622012196).
I would keep it straightforward and focus on those of "direct" relations. I never read something about reef fish, but I assume reef structure, algae biomass and specific food source or oxygen, might be of interest. Iam much more interested in your knowledge and ideas of how such variables shape the niche given a qualitative good introduction en mechanistic explanation then why a "mindless" model wold select it.
Best,
  • asked a question related to Fish
Question
1 answer
Hello,
I am trying to visualize a genomic locus. I produced Alexa fluor 488 dUTP tagged FISH probes by nick translation. I used two PCR amplified DNA fragments (12kb and 16 kb) that span through 28 Kb region. Although PNA telomere probes work with no problem, my probes are giving high background signal. I used cot1 dna, hyblock dna, and salmon dna as blocking reagents. How can I fix this issue? I attached the pictures of telomeres and my probes
Relevant answer
Answer
Hello,
By any chance, have you found a solution to the background signal issue with your FISH probe? It would be great to know if you've had any success with resolving this issue.
  • asked a question related to Fish
Question
2 answers
I want to see if there is a difference in age structure between male and female fish so I have ages from 0.5 to 8.5 and the number of each sex at that age but I dont know which variables I use in the chi squared
Relevant answer
Answer
Yes Amy, you have to put your ages into categories.
  • asked a question related to Fish
Question
4 answers
I hard that not to apply iodine mix salt in the fresh water fish pond. But I've no idea what is the bad effect of iodine for fresh water fish body.
Relevant answer
Answer
Mr. Adhan, Iodine mixed with salt can be harmful to freshwater fish fingerlings in aquaculture due to its potential toxicity. Elevated iodine levels can disrupt fish osmoregulation, causing stress and negatively impacting their growth and survival. Maintaining proper water quality and avoiding excessive iodine concentrations is crucial for the well-being your fish. so be cautious while handling fingerlings.
  • asked a question related to Fish
Question
1 answer
I am doing protein estimation from fish tissue by Bradford's method but after adding the reagent cbbg- 50mg, ethanol-50ml, ortho-phosphoric acid- 100ml in 1L soln precipitating clot is shown even in the standard BSA solutiin. Each test tube contain. 0.1 ml sample+0.9 ml phosphate buffer+5ml bf reagent.
Relevant answer
Answer
One possibility is that the amount of protein added is too high. Try diluting the sample with water and doing the assay again.
Another possibility is that the amount of other substances besides protein is the problem. This could be nucleic acids and fats, for example. Some additional preparation of the sample may be needed.
  • asked a question related to Fish
Question
1 answer
I am doing a study focusing on analyzing differences in fish assemblages due to temperature extremes. I calculated Shannon diversity, evenness, richness, and total abundance for each year sampled. The years are grouped into 2 temperature periods essentially as well, which is what I want to overall compare.
On viewing results, there appears to be consistency across years, and when comparing the two groupings. I do have multivariate tests to follow this after for community composition, but when describing univariate results, are there any statistical tests that can be followed up with to better show there is no difference, rather than simply describing the numbers and their mean differences?
Relevant answer
Answer
Hi Alana Barton It would be good to have more information here to be able to help more, but have you tried a GLM with both years and temperatures included in the model? Perhaps you'd also need to add an interaction effect between temperature and year (as from what you said there's seems to be an interaction). Further explanatory variables could be added to the model if you have measured them.
  • asked a question related to Fish
Question
9 answers
Hepatopancreas and kidney: control shows higher CAT, GPX, GSH and GST activity than fish exposed to pollution.
Relevant answer
Answer
Several studies have reported an increase in antioxidant enzymes due to oxidative stress, but a decrease in these has been noted in cases of severe oxidative stress, an indication that the organism has been overwhelmed by the radical attack.
  • asked a question related to Fish
Question
2 answers
I'm planning a project focused on studying osteocytes in the long bones of rats, requiring intact sections of both cortical and trabecular bone. To achieve this, I'm considering Kawamoto's tape sectioning technique for frozen blocks. My concern is about effectively adhering the tape, with the tissue section facing upwards, to ensure it remains attached to the glass slide throughout the entire FISH protocol. I'm interested in knowing if anyone has successfully used this technique for FISH applications with any type of tissue.
Relevant answer
Answer
Thank you, Erinke. This was helpful.
  • asked a question related to Fish
Question
2 answers
Imposing a fish of x Does its quality and nutritional value vary from country to country along the coast itself?
Is there any research on this idea?
Relevant answer
Answer
This variation can be influenced by the available nutrients, and also by the environmental conditions that allow the absorption of one or another nutrient.
  • asked a question related to Fish
Question
2 answers
I am doing an experiment involving microinjections with zebrafish and have been experiencing high amounts of mortality.
The embryos look healthy upon injection, but many of them are dying between 24h and 120h post injection.
I've been playing around with lower temperatures and making sure fish aren't sitting too long in tricaine to reduce the amount of mortality post-injection, but neither seem to be changing much.
If anyone has any tips to possibly minimize the amount of fish that are dying, I would greatly appreciate it!
Relevant answer
Answer
Hey there!
I have done zebrafish xenotransplantation before and I never had much mortality after injection. Some die off is expected and inevitable. What age are the larvae? In my experience, 48 hpf larvae seemed to survive ok when injected in tricane (maybe check your concentration, too high of a conc. can kill them), then washed in embryo water. I would then put them in fresh embryo water and put in the incubator at 33C. I used this temp because I was injecting human cancer cells and had to keep a happy medium between larvae temp and human temp. They never had any issue surviving at 33C.
  • asked a question related to Fish
Question
1 answer
Somebody can share me this book in pdf format?
I really need it for a project.
Thanks!
Relevant answer
Answer
Hola Julián, no tengo el libro pero me dedico al tema. Quizás pueda ayudarte.
  • asked a question related to Fish
Question
5 answers
Hello all,
I have a question. I am trying to test my DNA probes (that are biotin labelled) that we have in our lab to perform FISH. Probes are around 80 to 200 bp. I am doing a dot blot, to test our probes. However, I can not see anything when I develop the blot with ECL.
Does anyone have a good protocol that can help me? I feel like, I am missing a fundamental point. It doesn't make sense there is absolutely nothing on the membrane, complete white.
Looking forward to hear ideas,
Dilan
Relevant answer
Answer
As membrane I used nitrocellulose and I denatured the nick-translated DNA probes at 95°C for 5 minutes before spotting them on the nitrocellulose, then I baked it for about 1 hr at 80°C in a drying oven. Hope this helps.
  • asked a question related to Fish
Question
1 answer
In have been doing an NMDS of plancton, fish and aquatic macroinvertebrate abundances with 7 environmental variables in PAST. But when the analysis is complete the stress value it gives me is 0, is it normal or is there something I am not doing right?
Relevant answer
Answer
The stress value represents how close the reduced space in NMDS is to the multidimensional space (no reduction). Thus, the higher the number of dimensions included in the solution, the lower the stress value. Technically, if you include all possible dimensions (as many as the number of variables in the ordination; 'species'), the stress value will be zero. Are you including all dimensions in your analysis?
Note that NMDS is an unconstrained ordination; thus, the 7 environmental variables you mention have nothing to do with the solution and patterns in species composition in your solution.
  • asked a question related to Fish
Question
1 answer
Succer fish live on detritus food.
Relevant answer
Answer
This fish can eat local fish eggs that stick to the bottom or water plants. Apart from that, fish have more adaptive eating characteristics so they develop more quickly and become competitors for other fish both in terms of space and food.
  • asked a question related to Fish
Question
2 answers
I've no idea about desert fish.
Relevant answer
Answer
Fish can survive anywhere , with best environment condition.
  • asked a question related to Fish
Question
3 answers
I found that practically but don't know the reason.
Relevant answer
Answer
The metabolism of fish, as in other species, is directly related to its temperature. They are poikilothermic organisms (they do not regulate the internal temperature of the body), they depend on the ambient temperature, if it is low their metabolism and growth are also low.
  • asked a question related to Fish
Question
4 answers
Does the amb gene contribute in the ontogenic development and sex differentiation of fish?
Relevant answer
Answer
No problem, I ask about amb gene. Thank you for your help and attention.
I was previously worked on amh (anti-Müllerian hormone) gene.
  • asked a question related to Fish
Question
1 answer
Happy to announce two PhD positions in fish ecophysiology 📣
Fully funded, fun fish temperature physiology, supervision by me, @shaunkillen, @NPilakouta! @Naturvetenskap
Please spread the word 🙏
Relevant answer
Answer
Please note that the application should be sent through the application portal.
  • asked a question related to Fish
Question
1 answer
I am working on a series of lock and dam structures, where as a mitigation tool, managers release water from an upstream reservoir to supplement the natural flows in order to submerge the dam for migratory fish to traverse over top. This is not common and I have not found anything in the literature that discusses this. There are plenty of examples of environmental flows prescribed for downstream ecological effects but nothing like I describe above. If you know of any studies please point me to them. Also, if there are any studies that show passage of fish during natural flows that inundate a low-head dam, I would be interested in those as well. Thanks in advance.
Relevant answer
Answer
Environmental flows for low-head dams aim to mimic natural river flow patterns to facilitate fish passage. Techniques include pulsed flow releases, fish passage structures like ladders or ramps, and monitoring for adaptive management. These strategies help restore fish migration routes and improve river health by addressing barriers created by dams. Collaboration among stakeholders is crucial for effective implementation.
  • asked a question related to Fish
Question
2 answers
I have tried to extract RNA from fish semen and testis using the RNEasy kit and also have the PureLink RNA kit. I have tried a few modifications I've found online, but the RNA comes either highly degraded, despite what a simple gel run would suggest, or contaminated with other biomolecules. When trying to initially homogenize the tissue it becomes extremely gelatinous and therefore impossible to pipette, and unfortunately I do not have sophisticated equipment to use beads and other methods, although I am inclined to think the sample would still be too gelatinous for this method. I haven't found many references using liquid nitrogen to homogenize the tissues, so any past experiences would be highly appreciated. Also, if anyone has some suggestions for any of the two kits' protocols it would be appreciated too. I've read the addition of AGPC could be useful in this case.
Thanks to everyone in advance!
Relevant answer
Answer
Did you try to load your sample on a shredder column before the extraction?
it helps with saliva.
  • asked a question related to Fish
Question
1 answer
Can we use the kit for mice to study inflammation activities in fish for TNF alpha, IL-beta and iNOS in serum
Relevant answer
Answer
Sure! You may as well abuse mice to extrapolate to earthworms. Both are animals, isn't it?
  • asked a question related to Fish
Question
1 answer
fish gilatin are using now a days in making desert.
Relevant answer
Answer
Depends on the species you are trying to culture. When it comes to hydrogels you can use agar, starch, pectin or gelatin but some species are able to digest the matrix resulting in a loss of stiffness/liquefaction. As gelatin is made of protein it is highly likely that it will be digested by many species.
  • asked a question related to Fish
Question
3 answers
Fish feeding
Relevant answer
Answer
Hey there Chouaib Siouda! Making fish food float is a piece of cake. All you Chouaib Siouda need is a bit of kitchen ingenuity. Try mixing gelatin with your usual fish food concoction. The gelatin will give it that buoyant kick. It's like the jelly of the fish world – they'll be swimming up for more in no time. Experiment with the ratios until you Chouaib Siouda achieve the perfect floating feast for your aquatic buddies. And remember, it's all about keeping those fish fins flapping!
  • asked a question related to Fish
Question
1 answer
We found that catfish survive small water or mud without any water.
Relevant answer
Answer
Catfish possesses a pair of suprabranchial chambers located in the dorsal-posterior part of the branchial cavity having extensions from the upper parts of the second and fourth gill arches, forming the arborescent organs. This structure is an air-breathing organ (ABO) and allows aerial breathing.
In stale waters which is not properly aerated or small water bodies or even in mud without water, the catfish will breathe air using the air-breathing organ for their survival. The oxygen is extracted as a gas from the atmosphere by the catfish.
So, catfish can use their gills when they in water that is aerated as well as use their air-breathing organ or air bladders when water is scanty or not well aerated.
Best.
  • asked a question related to Fish
Question
1 answer
This is so common in nature of fish but why they do this, no idea.
Relevant answer
Answer
Hi Maruf,
Fish usually swim against the current for various reasons. One of the reasons is to locate food, as struggling against the water's flow can take them to areas with more food sources. Additionally, some fish swim against the current to reach their spawning grounds, where they can reproduce. Some fish make long journeys, and swimming upstream helps them reach their destination. By swimming against the flow, they can go upstream to where they lay eggs or return to their starting point. Fish create territories for breeding or finding food, essential for protecting their home.
  • asked a question related to Fish
Question
2 answers
We have analysed fish and rapeseed oils for secondary oxidation products (AOCS, 1998) using the direct method protocol from Current Protocols in Food Analytical Chemistry (2001). We weighed off 25 and 100 mg of fish oil and rapeseed oil, respectively, and added 25 mL of butanol in a volumetric flask. The rest was performed according to the protocol; the same goes for the standard curve. However, now we are struggling to calculate the concentration of TBA in mg/kg oil. The formula described in the protocol gives us extremely high concentrations: K = (1/slope) × 72.03 g/mol × (25 ml/5 ml) × 10e6 ]/m = (3.60 × 10e8 )/(slope × m)
Can someone help out?! Thanks in advance
Relevant answer
Answer
Let me first express that to me the protocol looks hopelessly complicated and confusing, and I definitely would use another method as well.
Anyway, I noticed in your calculation sheet concentrations expressed in mM while I read in the protocol (when it comes to the standard curve): “A typical standard series should consist of five samples, ranging from 1 × 10−6 to 1 × 10−5 M malonaldehyde.”
I notice in the (last) calculation step always a high number like 2.88x1010 in 2.88 × 1010/(slope × % recovery). Meaning that the slope should be high or the 1/slope very small in order to ‘normalize’ the TBA value. Could it be the concentration of MA that should be in the range of 10-5 or 10-6 instead of mM?
Kind regards.
  • asked a question related to Fish
Question
4 answers
Hi everyone,
I´ve been struggling with low DNA yields and weird ratio readings extracted from stool samples collected from fish. I am currently using the PowerFecal Pro DNA extraction kit from Qiagen and strictly following their guidelines, but I keep having the same problem.
To address that problem, I tried to decrease the elution buffer (EB) volume to concentrate my samples more, pass the EB twice through the silica membrane, increase the vortexing time, change the vortex machine (Qiagen suggests vortex-genie, but I tried the Precellys as well), wash the stool sample with PBS prior to the extraction process, incubate the tubes at RT to allow the ethanol to evaporate completely, and also soak the silica membrane with EB for a couple of minutes before centrifuging.
None of these fixed my problem.
Could adding an incubation step (65°C/10min) before the beads beat improve efficiency? Since I don´t know if the kit´s lysis buffer contains proteinase K or not,, I wonder if adding to it and then incubating it would improve the DNA yielding.
Would you happen to have any suggestions?
Thank you in advance for all the help
PS: By low yields, I mean ~1ng/ul and weird ratios >2
Relevant answer
Answer
I was wondering how you went with this in the end and if you made any other adjustments? I'm working with a species that's giving me the same issues that you were experiencing... I was going to try warming the sample + lysis buffer and EB tomorrow but was wondering if you'd optimised any further and had any tips.
Thanks :D
  • asked a question related to Fish
Question
4 answers
Dear
A small marine fish can not understand what is sea. An ant can not imagine how big the Himalayas is.
There is UNIVERSE. Let us stand at the coast and observe the sea. We can not ask the meaningless question " IS THERE GOD"
Relevant answer
Dear, thank you.
  • asked a question related to Fish
Question
2 answers
Why some fish have no blood in their muscle ?
Relevant answer
Answer
Dear Doctor
"Icefish blood is colorless because it lacks hemoglobin, the oxygen-binding protein in blood. Channichthyidae are the only known vertebrates to lack hemoglobin as adults. Although they do not manufacture hemoglobin, remnants of hemoglobin genes can be found in their genome. The hemoglobin protein is made of two subunits (alpha and beta). In 15 of the 16 icefish species, the beta subunit gene has been completely deleted and the alpha subunit gene has been partially deleted. One icefish species, Neopagetopsis ionah, has a more complete, but still nonfunctional, hemoglobin gene.
Red blood cells (RBCs) are usually absent, and if present, are rare and defunct. Oxygen is dissolved in the plasma and transported throughout the body without the hemoglobin protein. The fish can live without hemoglobin via low metabolic rates and the high solubility of oxygen in water at the low temperatures of their environment (the solubility of a gas tends to increase as temperature decreases). However, the oxygen-carrying capacity of icefish blood is less than 10% that of their relatives with hemoglobin.
Myoglobin, the oxygen-binding protein used in muscles, is absent from all icefish skeletal muscles. In 10 species, myoglobin is found in the heart muscle, specifically ventricles. Loss of myoglobin gene expression in icefish heart ventricles has occurred at least four separate times.
To compensate for the absence of hemoglobin, icefish have larger blood vessels (including capillaries), greater blood volumes (four-fold those of other fish), larger hearts, and greater cardiac outputs (five-fold greater) compared to other fish. Their hearts lack coronary arteries, and the ventricle muscles are very spongy, enabling them to absorb oxygen directly from the blood they pump. Their hearts, large blood vessels and low-viscosity (RBC-free) blood are specialized to carry out very high flow rates at low pressures. This helps to reduce the problems caused by the lack of hemoglobin. In the past, their scaleless skin had been widely thought to help absorb oxygen. However, current analysis has shown that the amount of oxygen absorbed by the skin is much less than that absorbed through the gills. The little extra oxygen absorbed by the skin may play a part in supplementing the oxygen supply to the heart, which receives venous blood from the skin and body before pumping it to the gills. Additionally, icefish have larger cardiac mitochondria and increased mitochondrial biogenesis in comparison to red-blooded notothenioids. This adaptation facilitates enhanced oxygen delivery by increasing mitochondrial surface area, and reducing distance between the extracellular area and the mitochondria."
  • asked a question related to Fish
Question
2 answers
I would like to find a job in KSA, Katar, Imarate or in Canada. It is impossible to remain suffering. What ever you work, you are negleted, no hope, no life.
My scientific publications:
Publications
2023
1- Cheriet, S.; Lengliz, S.; Romdhani, A.; Hynds, P.; Abbassi, M.S.; Ghrairi, T. Selection and characterization of bacteriocinogenic Lactic Acid Bacteria from the intestine of gilthead seabream (Sparus aurata) and whiting fish (Merlangius merlangus): promising strains for aquaculture probiotic and food bio-preservation. Life 2023, 13, 1833. https://doi.org/10.3390/ life13091833.
2- Hmissi S, Raddaoui A, Frigui S, Abbassi MS, Achour W, Chebbi Y, Thabet L. Detection of carbapenem resistant Pseudomonas aeruginosa co-harboring blaVIM-2 and blaGES-5 in burn patients. Acta Microbiol Immunol Hung. 2023. doi: 10.1556/030.2023.02089.
3- Benlabidi, S.; Raddaoui, A.; Lengliz, S.; Cheriet, S.; Hynds, P.; Achour, W.; Ghrairi, T.; Abbassi, M.S. Occurrence of high-risk clonal lineages ST58, ST69, ST224, and ST410 among extended-spectrum β-lactamase-producing Escherichia coli isolated from healthy free-range chickens (Gallus gallus domesticus) in a rural region in Tunisia. Genes 2023, 14, 875. https://doi.org/ 10.3390/genes14040875.
4- Said Bouzidi, Akila Bourabah, Sarah Cheriet, Mohamed Salah Abbassi, Samia Meliani, Hanane Bouzidi.Occurrence of virulence genes and methicillin-resistance in Staphylococcus aureus isolates causing subclinical bovine mastitis in Tiaret area, Algeria. Letters in Applied Microbiology, 2023, 0, 1-9 https://doi.org/10.1093/lambio/ovad003.
5- Dhaouadi S, Romdhani A, Bouglita W, Chedli S, Chaari S, Soufi L, Cherif A, Mnif W, Abbassi MS, Elandoulsi RB. High Biofilm-forming ability and clonal dissemination among colistin-resistant Escherichia coli isolates recovered from cows with mastitis, diarrheic calves, and chickens with colibacillosis in Tunisia. Life. 2023; 13(2):299. https://doi.org/10.3390/life13020299.
6- Ben Said M, Thabet L, Cheriet S, Messadi AA, Gómez P, Ruiz-Ripa L, Sghaier S, Hassen B, Hassen A, Torres C, Abbassi MS. Widespread of the Vienna/Hungarian/Brazilian CC8-ST239-SCCmec III MRSA clone in patients hospitalized in the Tunisian Burn and Traumatology Center. Lett Appl Microbiol. 2023;76:ovac001. doi: 10.1093/lambio/ovac001.
7- Hajer Kilani, Mohamed Salah Abbassi, Rim Dhifalli, Bouraoui Jihene, Riadh Mansouri, Noureddine Ben Chehida, Ilhem Boutiba-Benboubaker. Comparison of Antimicrobial Susceptibility of Escherichia Coli Isolated from Fecal Poultry and Bovine Housed in Tunisian Farms; Phylogroup Diversity and Detection of Tetracycline and Sulfonamides Resistant Genes With Integron Class1. Transl Med OA, 2023 ; 1(1), 17-26.
2022
1- Melek Ben Aissa, Sana Ferjani, Mohamed Salah Abassi, Nada Al-Suwailem and Ilhem Boutiba. (2022) Characterization of Escherichia colicefotaxime-resistance in Al-Ahsa, KSA: predominance of CTX-15 and first report of blaCMY-42 gene.Appl. Sci. 2022, 12(19):9964. https://doi.org/10.3390/app12199964.
2- Bilel Hassen, Salah Hammami, Abdonnaceur Hassen, Mohamed Salah Abbassi. Molecular mechanisms and clonal lineages of colistin-resistant bacteria across the African continent: A scoping review. Letters in Applied Microbiology. 2022. 75:1390-1422.
3- S. Harbaoui, S. Ferjani, M.S. Abbassi, M. Saidani, T. Gargueh, M. Ferjani, Y. Hammi, I. Boutiba-Ben Boubaker. Genetic heterogeneity and predominance of blaCTX-M-15 in cefotaxime-resistant Enterobacteriaceae isolates colonizing hospitalized children in Tunisia. Letters in Applied Microbiology. 2022;75(6):1460-1474.
4- Mohamed Salah Abbassi, Souhir Badi, Sana Lengliz, Riadh Mansouri, Salah Hammami, Paul Hynds. Hiding in plain sight - Wildlife as a neglected reservoir and pathway for the spread of antimicrobial resistance: A narrative review. FEMS Microbiology Ecology, 2022. 98(6):fiac045. doi: 10.1093/femsec/fiac045.
5- Ana R. Freitas, Ana P. Tedim, Ana C. Almeida-Santos, Bárbara Duarte, Houyem Elghaieb, Mohamed S. Abbassi, Abdennaceur Hassen, Carla Novais, and Luísa Peixe. High-resolution genotyping unveils identical ampicillin-resistant Enterococcus faecium strains in different sources and countries: a One Health approach. Microorganisms 2022, 10: 632. https://doi.org/10.3390/ microorganisms10030632.
6- Lengliz, S., Cheriet, S., Raddaoui, A., Klibi, N., Ben Chehida, N., Najar, T., Abbassi, M. S. (2022). Species distribution and genes encoding antimicrobial resistance in enterococcus spp. isolates from rabbits residing in diverse ecosystems: A new reservoir of linezolid and vancomycin resistance. Journal of Applied Microbiology, 132:2760-2772. doi.org/10.1111/jam.15461.
7- Werheni Ammeri R, Di Rauso Simeone G, Hidri Y, Abbassi MS, Mehri I, Costa S, Hassen A, Rao MA. Combined bioaugmentation and biostimulation techniques in bioremediation of pentachlorophenol contaminated forest soil. Chemosphere. 2022; 290:133359. doi: 10.1016/j.chemosphere.2021.133359.
8- Al-Gallas N, Belghouthi K, Barratt NA, Ghedira K, Hotzel H, Tomaso H, El-Adawy H, Neubauer H, Laouini D, Zarrouk S, Abbassi MS, Aissa RB. Identification and characterization of multidrug-resistant ESBL-producing Salmonellaenterica serovars Kentucky and Typhimurium isolated in Tunisia CTX-M-61/TEM-34, a novel cefotaxime-hydrolysing β-lactamase of Salmonella. J Appl Microbiol. 2022; 132(1):279-289. doi: 10.1111/jam.15211.
9- Djanette Barour, Mohamed Salah Abbassi, Oussama Amara, Rayane Benmabrouk. Antimicrobial resistance in Escherichia coliisolates from cattle and poultry in Algeria. Veterinaria, 2022; 71 (issue 3): 311-319. https://doi.org/10.51607/22331360.2022.71.3.311.
2021
1- Badi S, Ammeri RW, Abbassi Mohamed Salah, Snousssi M, Cremosini P, Luini M, Castiglioni B, Hassen Abdennaceur. Study of the diversity of 16S-23S rDNA internal transcribed spacer (ITS) typing of Escherichia coli strains isolated from various biotopes in Tunisia. Arch Microbiol. 2021; 204:32. doi: 10.1007/s00203-021-02684-x.
2- Aouadi Meriem, Kamel Msaada, Essia Sebai, Wissem Aidi Wannes, Mohamed Salah Abbassi, Hafidh Akkari. Antioxidant, anthelmintic and antibacterial activities of red juniper (Juniperusphoenicea L.) essential oil. Journal of Essential Oil Research. 2021; DOI: 10.1080/10412905.2021.1941338.
3- Benlabidi Saloua, Raddaoui Anis, Achour Wafa, Hassen Bilel, Torres Carmen, Abbassi Mohamed Salah, Ghrairi Taoufik. Genetic characterization of ESBL/pAmpC-producing Escherichia coli isolated from forest, urban park and cereal culture soils. FEMS Microbiol Ecol. 2021;97(11):fiab146. doi: 10.1093/femsec/fiab146.
4- Mohamed Salah Abbassi, Hajer Kilani, Islem Abid, Yolanda Sáenz, Paul Hynds, Sana Lengliz, Noureddine Ben Chehida, and Ilhem Boutiba-Ben boubaker. Genetic background of antimicrobial resistance in multiantimicrobial-resistant Escherichia coli isolates from feces of healthy broiler chickens in Tunisia. Biomed Res Int. 2021;2021:1269849. 2021 doi:10.1155/2021/1269849.
5- Lengliz Sana, Benlabidi Saloua, Raddaoui Anis, Cheriet Sarah, Ben Chehida Noureddine, Najar T, Abbassi Mohamed Salah. High occurrence of carbapenem-resistant Escherichia coli isolates from healthy rabbits (Oryctolagus cuniculus): first report of blaIMI and blaVIM type genes from livestock in Tunisia. Lett Appl Microbiol. 2021; 73: 708-717. doi: 10.1111/lam.13558.
6- Al-Gallas N, Khadraoui N, Hotzel H, Tomaso H, El-Adawy H, Neubauer H, Belghouthi K, Ghedira K, Gautam HK, Kumar B, Laouini D, Zarrouk S, Abbassi MS, Aissa RB. Quinolone resistance among SalmonellaKentucky and Typhimurium isolates in Tunisia: first report of SalmonellaTyphimurium ST34 in Africa and qnrB19 in Tunisia. J Appl Microbiol. 2021;130:807-818. doi: 10.1111/jam.14822.
7- Othman AA, Hiblu MA, Abbassi MS, Abouzeed YM, Ahmed MO. Nasal colonization and antibiotic resistance patterns of Staphylococcus species isolated from healthy horses in Tripoli, Libya. J Equine Sci. 2021;32(2):61-65. doi: 10.1294/jes.32.61.
8- Lengliz Sana, Abbassi Mohamed Salah, Rehaiem Amel, Ben Chehida Noureddine, Najar Taha. Characterization of bacteriocinogenic Enterococcus isolates from wild and laboratory rabbits for the selection of autochthonous probiotic strains in Tunisia. J Appl Microbiol. 2021; 131(3):1474-1486. doi: 10.1111/jam.15047.
9- Di Francesco A, Salvatore D, Sakhria S, Catelli E, Lupini C, Abbassi Mohamed Salah, Bessoussa G, Ben Yahia S, Ben Chehida Noureddine. High frequency and diversity of tetracycline resistance genes in the microbiota of broiler chickens in Tunisia. Animals 2021, 11, 377. https://doi.org/10.3390/ani11020377
10- Elnageh HR, Hiblu MA, Abbassi MS, Abouzeed YM, Ahmed MO. Prevalence and antimicrobial resistance of Staphylococcus species isolated from cats and dogs. Open Vet J. 2021; 10(4):452-456.
11- Kilani H, Abbassi MS, Ferjani S, Ben Chehida N, Boutiba-Ben boubaker. Virulence and comparison of methods for detection of biofilm formation by Escherichia coliisolated from retail meat in Tunisia. Journal of Microbiology and Modern Techniques. 4.
12- Bilel Hassen, Mohamed Salah Abbassi, Laura Ruiz-Ripa, Olouwafemi M. Mama, Chourouk Ibrahim, Saloua Benlabidi, Abdennaceur Hassen, Carmen Torres, Salah Hammami. Genetic characterization of extended-spectrum β-lactamase-producing Enterobacteriaceae from biological industrial wastewater treatment plant in Tunisia with detection of the colistin-resistance mcr-1 gene. FEMS Microbiol Ecol. 2021;97(3):fiaa231.
13- Ksibi B, Ktari S, Othman H, Ghedira K, Maalej S, Mnif B, Abbassi MS, Fabre L, Rhimi F, Le Hello S, Hammami A. Comparison of conventional molecular and whole-genome sequencing methods for subtyping Salmonellaenterica serovar Enteritidis strains from Tunisia. Eur J Clin Microbiol Infect Dis. 2021 ;40:597-606.
2020
1. Hassen B, Abbassi MS, Benlabidi S, Ruiz-Ripa L, Mama OM, Ibrahim C, Hassen A, Hammami S, Torres C. Genetic characterization of ESBL-producing Escherichia coli and Klebsiella pneumoniae isolated from wastewater and river water in Tunisia: predominance of CTX-M-15 and high genetic diversity. Environ Sci Pollut Res Int. 2020, 27:44368-44377 doi: 10.1007/s11356-020-10326-w.
2. Freitas AR, Tedim AP, Duarte B, Elghaieb H, Abbassi MS, Hassen A, Read A, Alves V, Novais C, Peixe L. Linezolid-resistant (Tn6246::fexB-poxtA) Enterococcus faecium strains colonizing humans and bovines on different continents: similarity without epidemiological link. J Antimicrob Chemother. 2020:dkaa227. doi: 10.1093/jac/dkaa227.
3. Souhir Badi, Mohamed Salah Abbassi, Mejdi Snoussi, Rim Werhani, Salah Hammami, Rasha Maal-Bared, Abdennaceur Hassen.High rates of antibiotic resistance and biofilm production in Escherichia coli isolates from food products of animal and vegetable origins in Tunisia: a real threat to human health. International Journal of Environmental Health Research, 2020; 1:11.
4. Sana Dhaouadi, Leila Soufi, Amani Hamza, Didier Fedida, Chtioui Zied, Bilel Hassen, Emna Awadhi, Mohamed Mtibaa, Ameur Cherif, Carmen Torres, Mohamed Salah Abbassi, Ramzi Boubaker Landolsi. Co-occurrence of mcr-1 mediated colistin resistance and β-lactamases encoding genes in multidrug-resistant Escherichia coli from broiler chickens with colibacillosis in Tunisia. J Global Antimicrobial Resistance. 2020; 22:538-545.
5. Hajer Kilani, Sana Ferjani, Riadh Mansouri, Ilhem Boutiba-Benboubaker, Mohamed Salah Abbassi. Occurrence of plasmid-mediated quinolone resistance determinants among Escherichia colistrains isolated from animals in Tunisia: specific pathovars acquired qnrgenes. J Global Antimicrobial Resistance, 2020. 20, 50-55.
6. Bilel Hassen, Mohamed Salah Abbassi, Laura Ruiz-Ripa, Olouwafemi M. Mama, Abdennaceur Hassen, Carmen Torres, Salah Hammami. High prevalence of mcr-1 encoding colistin resistance and first identification of blaCTX-M-55in ESBL/CMY-2-producing Escherichia coli isolated from chicken faeces and retail meat in Tunisia. Int J Food Microbiol. 2020. 318. 108478. DOI: 10.1016/j.ijfoodmicro.2019.108478.
7. Nariman Farag Almshawt, Murad Ali Hiblu, Ahmed Shaban Abid, Mohamed Salah Abbassi, Ahmed Asaid Elkady, Yousef Mohamed Abouzeed, Mohamed Omar Ahmed. Antimicrobial resistance among commensal enteric bacteria isolated from healthy cattle in Libya. PAMJ One Health. 2020;1:3.
2019
1. Bilel Hassen, Benlabidi Saloua, Mohamed Salah Abbassi, Laura Ruiz-Ripa, Olouwafemi M. Mama, Abdennaceur Hassen, Salah Hammami, Carmen Torres.. mcr-1 encoding colistin resistance in CTX-M-1/CTX-M-15- producing Escherichia coli isolates of bovine and caprine origins in Tunisia. First report of CTX-M-15-ST394/D E. colifrom goats. Comparative Immunology, Microbiology and Infectious Diseases. 2019. 67:101366. doi.org/10.1016/j.cimid.2019.101366.
2. Houyem Elghaieb, Ana P. Tedim, Mohammed Salah Abbassi, Carla Novais, Bárbara Duarte, Abdennaceur Hassen, Luísa Peixe, Ana R. Freitas. From farm-to-fork: identical clones and Tn6674-like elements in linezolid-resistant Enterococcus faecalis from food-producing animals and retail meat. J Antimicrob Chemother. 2019. 75:30-35.
3. Elghaieb H, Freitas AR, Abbassi MS, Novais C, Zouari M, Hassen A, Peixe L. Dispersal of linezolid-resistant enterococci carrying poxtA or optrA in retail meat and food-producing animals from Tunisia. J Antimicrob Chemother. 2019. 74:2865-2869
4. Khemiri M, Abbassi MS, Elghaieb H, Zouari M, Dhahri R, Pomba C, Hammami S. High occurrence of enterotoxigenic isolates and low antibiotic resistance rates of Staphylococcus aureus isolated from raw milk from cows and ewes. Lett Appl Microbiol. 2019; 68: 573-579.
5. Asma Bel Hadj Ahmed, Mohamed Salah Abbassi, Beatriz Rojo-Bezares, Lidia Ruiz-Roldán, Rabii Dhahri, Ines Mehri, Yolanda Sáenz, Abdennaceur Hassen. Characterization of Pseudomonas aeruginosa isolated from various environmental niches: New STs and occurrence of antibiotic susceptible “high-risk clones”. Inter J Environ Health Res. 2019. 16:1-10. doi.org/10.1080/09603123.2019.1616080.
6. Senda Sghaier, Mohamed Salah Abbassi, Alvaro Pascual, Lara Serrano, Paula Díaz- De-Alba, Meriam Ben Said, Bilel Hassen, Chourouk Ibrahim, Abdennaceur Hassen, Lorena Lopez-Cerero. ESBL-producing Enterobacteriaceae from animal origins and wastewater in Tunisia: first detection of O25b-B23-CTX-M-27-ST131 Escherichia coli and CTX-M-15-OXA-204-producing Citrobacter freundii from wastewater. J Global Antimicrob Resist 2019 ;17:189-194
7. Bilel Hassen, Senda Sghaier, Mohamed Salah Abbassi, Mohamed Amine Ferjani, Meriam Ben Said, Abdennaceur Hassen, Salah Hammami.Multidrug resistance and the predominance of blaCTX-M in extended spectrum beta-lactamase-producing Enterobacteriaceae of animal and water origin. J Mol Microbiol Biotechnol 2019;28: 201-206. DOI: 10.1159/000495409.
8. Tabatabaei S, Najafifar A, Askari Badouei M, Zahraei Salehi T, Ashrafi Tamai I, Khaksar E, Abbassi MS, Ghazisaeedi F. Genetic characterization of methicillin resistant Staphylococcus aureus and Staphylococcus pseudintermediusin pets and veterinary personnel's in Iran: new insights into emerging MRSP. J Glob Antimicrob Resist. 2019. 16:6-10.doi: 10.1016/j.jgar.2018.08.022.
2018
1- A. Askri, N. Fitouhi, A. Raach-Moujahed, MS Abbassi, Z. Maalaoui, H. Debbabi. Effect of a commercial prebiotic « AVIATOR®» on zootechnical performances, caecal microflora and meat quality of broilers. Journal of new sciences, Sustainable Livestock Management, 2018. 8 (1): 161-168
2- Monistero V, Graber HU, Pollera C, Cremonesi P, Castiglioni B, Bottini E, Ceballos-Marquez A, Lasso-Rojas L, Kroemker V, Wente N, Petzer IM, Santisteban C, Runyan J, Veiga Dos Santos M, Alves BG, Piccinini R, Bronzo V, Abbassi MS, Said MB, Moroni P. Staphylococcus aureus Isolates from bovine mastitis in eight countries: Genotypes, detection of genes encoding different toxins and other virulence genes. Toxins (Basel). 2018;10(6). pii: E247. doi: 10.3390/toxins10060247.
3- Abbassi Mohamed Salah, Debbichi Najwa, Hammami Salah. Virulotypes of uropathogenic E. coli isolates from diabetic patients in Tunisia: Occurrence of the invasion-associated IbeAgene. American Journal of Clinical Microbiology and Antimicrobials. 2018; 1(1): 1001
4- Elaa Maamar, Carla Andrea Alonso, Zaineb Hamzaoui, Nouha Dakhli, Mohamed Salah Abbassi, Sana Ferjani, Mabrouka Saidani, Ilhem Boutiba-Ben Boubaker, Carmen Torres. Emergence of plasmid-mediated colistin-resistance in CMY-2-producing Escherichia coliof lineage ST2197 in a Tunisian poultry farm. International Journal of Food Microbiology 2018; 269:60-63.
5- Souhir Badi, Paola Cremonesi, Mohamed Salah Abbassi, Chourouk Ibrahim, Majdi Snoussi, Giulia Bignoli, Mario Luini, Bianca Castiglioni, and Abdennaceur Hassen. Antibiotic resistance phenotypes and virulence-associated genes in Escherichia coli isolated from animals and animal food products in Tunisia. FEMS Microbiology Letters, 2018, 365(10). doi: 10.1093/femsle/fny088.
6- Monia Khemiri, Mohamed Salah Abbassi, Natacha Couto, Riadh Mansouri, Salah Hammami, Constança Pomba. Genetic characterization of Staphylococcus aureusisolated from milk and nasal samples of healthy cows in Tunisia: First report of ST97-t267-agrI-SCCmecV MRSA of bovine origin in Tunisia. Journal of Global Antimicrobial Resistance, 2018. 14:161-165.
7- Ben Rhouma A, Abbassi MS, Boubaker A. Effects of supplementing diets with thymol on performance growth and caecal microflora of growing rabbit. Journal of new sciences, Agriculture and Biotechnology, 2018. 57 (1), 3693-3697.
2017
1- Abbassi Mohamed Salah. Enterobacteriaceae and the CTX-M extended-spectrum β-lactamases (CTX-M ESBLs): What we should know? Journal of Infectious Diseases and Medical Microbiology. Editorial. Octobre 2017.
2- Ana R. Freitas, Houyem Elghaieb, Ricardo León-Sampedro, Mohamed Salah Abbassi, Carla Novais, Teresa M. Coque, Abdennaceur Hassen, Luisa Peixe. Detection of optrA in the African continent (Tunisia) within a mosaic Enterococcus faecalisplasmid from urban wastewaters. J Antimicrobial Chemother, 2017; 72 : 3245-3251.
3- Hajer Kilani, Mohamed Salah Abbassi, Sana Ferjani, Rakia Ben Salem, Riadh Mansouri, Noureddine Ben Chehida, Ilhem Boutiba-Ben Boubaker. Diverse Escherichia colipathovars of phylogroups B2 and D isolated from animals in Tunisia. The Journal of Infection in Developing Countries 2017; 11:549-556.
4- Khemiri M, Akrout Alhusain A, Abbassi MS, El Ghaieb H, Santos Costa S, Belas A, Pomba C, Hammami S. Clonal spread of methicillin-resistant Staphylococcus aureus-t6065-CC5-SCCmecV-agrII in a Libyan hospital. J Glob Antimicrob Resist. 2017 ;10:101-105.
5- Ben Salem R, Abbassi MS, García V, García-Fierro R, Fernández J, Kilani H, Jaouani I, Khayeche M, Messadi L, Rodicio MR. Antimicrobial drug resistance and genetic properties of Salmonella enterica serotype Enteritidis circulating in chicken farms in Tunisia. J Infect Public Health 2017. 10:855-860.
6- Abbassi Mohamed Salah, Zouari Mohamed, Hassen Bilel, Zniter Souhir, Dimassi Asma, Mansouri Riadh. ESBL/Cephalosporinase-producing Escherichia coli from retail poultry meat in Tunisia: Predominance of blaCTX-Mgene and multidrug resistance. J of Microbes and Microbiol Technic 2017; 1 (1): 102.
7- Meriam Ben Said, Mohamed Salah Abbassi, Paula Gómez , Laura Ruiz-Ripa, Senda Sghaier, Oussama El Fekih, Abdennaceur Hassen, Carmen Torres. Genetic characterization of Staphylococcus aureus isolated from nasal samples of healthy ewes in Tunisia. High prevalence of CC130 and CC522 lineages. Comparative Immunology, Microbiology and Infectious Diseases 2017, 51 : 37-40.
8- Meriam Ben Said, Mohamed Salah Abbassi, Paula Gómez, Laura Ruiz-Ripa, Senda Sghaier, Chourouk Ibrahim, Carmen Torres, Abdennaceur Hassen. Staphylococcus aureus isolated from wastewater treatment plants in Tunisia: occurrence of human and animal associated lineages. J Water Health, 2017, 15:638-643.
9- Mohamed Salah Abbassi, Hajer Kilani, Mohamed Zouari, Riadh Mansouri, Oussama El Fekih, Salah Hammami, Noureddine Ben Chehida. Antimicrobial resistance in Escherichia coli isolates from healthy poultry, bovine and ovine in Tunisia: A real animal and human health threat. Journal of Clinical Microbiology and Biochemical Technology, 2017, 3(2): 019-023.
2016
1- Abbassi Mohamed Salah, Debbichi Najwa, Mahrouki Sihem, Hammami Salah. Current epidemiology of non-β-lactam antibiotics-resistance in Escherichia coli from animal origins in Tunisia: A paradigm of multidrug resistance. Archives of Clinical Microbiology 2016. Vol 7. No 5: 29. DOI: 10.4172/1989-8436.100059
2- Ben Said M, Abbassi MS, Bianchini V, Sghaier S, Cremonesi P, Romanò A, Gualdi V, A H, Luini M. Genetic characterization and antimicrobial-resistance of Staphylococcus aureus isolated from bovine milk in Tunisia. Lett Appl Microbiol. 2016. 63:473-481
3-Nazek Al-Gallas, Mohamed Salah Abbassi, Becher Gharbi, Imen Boukef, Amna Al-Gallas, Monia Elbour, Ridha Mzoughi, Ridha Ben Aissa. Molecular study of Vibrio cholerae O1 Serotype Ogawa and Non-O1/139 isolated from the Environment in Tunisia. Journal of Microbiology and Antimicrobial Agents, 2016; 2 (2): 3-14
4-Elaa Maamar, Samia Hammami, Carla Andrea Alonso, Nouha Dakhli, Mohamed Salah Abbassi, Sana Ferjani, Zaineb Hamzaoui, Mabrouka Saidani, Carmen Torres, Ilhem Boutiba-Ben Boubaker. High prevalence of extended-spectrum and plasmidic AmpC beta-lactamase-producing Escherichia coli from poultry in Tunisia. International Journal of Food Microbiology, 2016. 231:69-75.
5- R. Ben Salem, M.S. Abbassi , V. Garcıa , R. Garcia-Fierro , C. Njoud , L. Messadi and M. Rosario Rodicio. Detection and molecular characterization of Salmonella enterica serovar Eppendorf circulating in chicken farms in Tunisia. Zoonoses and Public Health. 2016, 63: 320-327.
6- Rakia Ben Salem, Mohamed Salah Abbassi, Jean-luc Cayol, Amel Bourouis, Sihem Mahrouki, Marie-Laure Fardeau, Omrane Belhadj. Thermophilic Bacillus licheniformis RBS5 isolated from hot Tunisian spring co-producing alkaline and thermostable α-amylase and protease enzymes. Journal of Microbiology, Biotechnology and Food Sciences, 2016. DOI10.15414/jmbfs.2016.5.6.557-562.
7- Baâtour Olfa, Aouadi Mariem, Abbassi Mohamed Salah, Ben Nasri Ayachi Mouhiba. Chemical content, antibacterial and antioxidant properties of essential oil extract from Tunisian Origanum majorana L. cultivated under saline condition. Pakistan journal of pharmaceutical sciences. 2016, Vol.29, No.6 :1951-1958.
8- Debbichi Najwa, Abbassi Mohamed Salah, Sáenz Yolanda, Khemiri Monia, Majouri Dorsaf, Ben Rayena Chiheb, Ben Salem Rakia, Kilani Hajer, Ben Hassen Assia, Hammami Salah. Low antibiotic resistance rates and high genetic heterogeneity of Escherichia coli isolates from urinary tract infections of diabetic patients in Tunisia. J Chemother. 2016 ;28(2):89-94.
2015
1- Jaouani I, Abbassi MS, Ribeiro SC, Khemiri M, Mansouri R, Messadi L, Silva CC. Safety and technological properties of bacteriocinogenic enterococci isolates from Tunisia. J Appl Microbiol. 2015, 119:1089-1100.
2- Kilani H, Abbassi MS, Ferjani S, Mansouri R, Sghaier S, Ben Salem R, Jaouani I, Douja G, Sana B, Hammami S, Ben Chehida N, Boubaker I. Occurrence of blaCTX-M-1, qnrB1 and virulence genes in avian ESBL-producing Escherichia coli isolates from Tunisia. Front. Cell. Infect. Microbiol, 2015, 5:38. doi: 10.3389/fcimb.2015.00038.
3- Mahrouki Sihem, Hammami Salah, Mansouri Riadh, Abbassi Mohamed Salah. Overview of ESBL-producing Escherichia coli of animal origin in Tunisia: In the way of the global spread of CTX-M β-Lactamases. Archives of Clinical Microbiology. 2015. Vol 6. No 2: 4
4- Baâtour Olfa, Aouadi Mariem, Dhieb Cyrine, Abbassi Mohamed Salah, Sadfi Najla, Ben Nasri -Ayachi Mouhiba. Screening for antifungal activity polyphenol content of Origanum majorana L. essential oil treated and non treated with salt. International Journal of Advanced Research. 2015. Volume 3, Issue 5, 570-574
5- A. Gritli, T. Daboussi, M. Ben Moussa, M.S. Abbassi. Prevalence and characterization of Salmonella in chicken consumed in military cantines. Journal of new sciences, Agriculture and Biotechnology 2015, JS-INAT (12), 908-914
6- A. Gritli, I. Belkahla, M. Ben Moussa, M.S. Abbassi. Occurrence and characterization of Escherichia coli in raw lettuce consumed in a military hospital. Journal of new sciences, Agriculture and Biotechnology 2015, JS-INAT (11), 899-907.
2014
1- Imen Jaouani, Mohamed Salah Abbassi, Valentina Alessandria, Jihen Bouraoui, Rakia Ben Salem, Hajer Kilani, Riadh Mansouri, Lilia Messadi, Luca Cocolin. High inhibition of Paenibacillus larvae and Listeria monocytogenes by Enterococcus isolated from different sources in Tunisia and identification of their bacteriocin genes. Letters in Applied Microbiology. 2014. 59 (1):17-25.
2- Hela Lamine-Khemiri, Remigio Martínez, Waldo Luis García-Jiménez, Jose Manuel Benítez-Medina, Maria Cortés, Inés Hurtado, Mohammed Salah Abbassi, Imed Khazri, Mohammed Benzarti, Javier Hermoso-de-Mendoza. Genotypic characterization by spoligotyping and VNTR typing of Mycobacterium bovis and Mycobacterium caprae isolates from cattle of Tunisia. Trop Anim Health Prod. 2014, 46(2):305-311.
2013
1- Leila Soufi, Yolanda Sáenz, Laura Vinué, Mohamed Salah Abbassi, Salah Hammami, Carmen Torres. Characterization of Pc promoter variants of class 1 integrons in Escherichia coli isolates from poultry meat. Foodborne Pathogens and Disease. 2013, 10 (12):1075-1077.
2- Nazek Al-gallas, Mohamed Salah Abbassi , Becher Gharbi , Moulka Manai, Mohamed N Ben Fayala Raghda Bichihi, Amna Al-Gallas, Ridha Ben Aissa. Occurrence of plasmid-mediated quinolone resistance determinants and rmtB gene in Salmonella enterica serovar Enteritidis and Typhimurium isolated from food-animal products in Tunisia. Foodborne Pathogens and Disease. 2013, doi:10.1089/fpd.2012.1466.
2011
1- Leila Soufi, Yolanda Sáenz, Laura Vinué, Mohamed Salah Abbassi, Elena Ruiz, Myriam Zarazaga, Assia Ben Hassen, Salah Hammami, Carmen Torres. Escherichia coli of poultry food origin as reservoir of sulphonamide resistance genes and integrons. International Journal of Food Microbiology, 2011; 144: 497-502.
2- Leila Soufi, Yolanda Sáenz, María de Toro, Mohamed Salah Abbassi, Beatriz Rojo-Bezares, Laura Vinué, Ons Bouchami, Arabella Touati, Assia Ben Hassen, Salah Hammami, Carmen Torres. Phenotypic and genotypic characterization of Salmonella enterica isolated from poultry meat in Tunisia and identification of new genetic traits. Vector-Borne and Zoonotic Diseases, 2011; 12: 10-16.
3- Hajji W, Hamdi H, Mehri W, Bouzgharou N, Charfeddine L, Belarbia M, Lengliz-Ben Rayana S, Abbassi M.S. Antibiorésistance de souches aviaires d’Escherichia coli isolées dans la région du Sahel Tunisien : Résultats préliminaires. Bulletin vétérinaire 2011. N28: 7-8
4- Ben Aissa H, Zaouchi H, Khanfir L, Limam L, Lenglize-Ben Rayana S, Hamdi H, Abbassi M.S. Production de bactériocines par des souches d’Enterococcus spp. isolées à l’IRVT : Spectre d’action antibactérienne et antifongique et perspectives. Bulletin vétérinaire 2011. N28: 4-6.
2010
1- Mohamed Salah Abbassi, Elena Ruiz, Yolanda Sáenz, Arij Mechergui, Assia Ben Hassen, Carmen Torres. Genetic background of quinolone resistance in CTX-M-15 producing Klebsiella pneumoniae and Escherichia coli strains in Tunisia. Journal of Chemotherapy, 2010; 22: 66-67.
2009
1- Leila Soufi, Mohamed Salah Abbassi, Yolanda Sáenz, Laura Vinué, Sergio Somalo, Myriam Zarazaga, Asad Abbas, Rafika Dbaya, Latifa Khanfir, Assia Ben Hassen, Salah Hammami, Carmen Torres. Prevalence and diversity of integrons and associated resistance genes in Escherichia coli isolates from poultry meat in Tunisia. Foodborne Pathogens and Disease, 2009; 6 (9): 1067-1073.
2- Mohamed Salah Abbassi, Arabella Touati , Wafa Achour, Ahmed Cherif , Sami Jabnoun, Naima Khrouf, Assia Ben Hassen. Stenotrophomonas maltophilia responsible for respiratory infection in neonatal intensive care unit: Antibiotic susceptibility and molecular typing. Pathologie Biologie, 2009; 57 (5): 363-367.
3- Abbassi Mohamed Salah, Achour Wafa, Ben Hassen Assia. Enterococcus faecium isolated from bone marrow transplant patients in Tunisia: High prevalence of antimicrobial resistance and low pathogenic power. Pathologie Biologie, 2009; 57: 268-271.
4- Intissar Guedda, Rafika Debya, Mohamed Salah Abbassi, Leila soufi, Assia Ben Hassen, Salah Hammami. Phenotypic and genotypic typing of Salmonella enterica serovar Enteritidis isolates from poultry farms environment in Tunisia. Annals of Microbiology, 2009; 59 (2): 373-377.
2008
1- Abbassi Mohamed Salah, Carmen Torres, Achour Wafa, Laura Vinué, Yolanda Sáenz, Daniela Costa, Ons Bouchami, Ben Hassen Assia. Genetic characterisation of CTX-M-15-producing Klebsiella pneumoniae and Escherichia coli strains isolated from stem cell transplant patients in Tunisia. International Journal of Antimicrobial Agents, 2008 (32) 308-314.
2- Abbassi Mohamed Salah, Bouchami Ons, Touati Arabella, Achour Wafa, Ben Hassen Assia. Clonality and occurrence of genes encoding antibiotic resistance and biofilm in methicillin-resistant Staphylococcus epidermidis strains isolated from catheters and bacteraemia in neutropenic patients. Current Microbiology. 2008, 57: 442-448.
3- Bouzaiiane O, Abbassi MS, Gtari M, Belhaj O, Jedidi N, Ben Hassan A, Hassen A. Molecular typing of staphylococcal communities isolated during municipal solid waste composting process. Annals of Microbiology. 2008. 58: 387-394.
2007
1- Abbassi Mohamed Salah, Achour Wafa, Ben Hassen Assia. High-level gentamicin-resistant Enterococcus faecium strains isolated from bone marrow transplant patients: accumulation of antibiotic resistance genes, large plasmids and clonal strain dissemination. International Journal of Antimicrobial Agents, 2007; 29: 658-664.
2- Abbassi Mohamed Salah, Znazen A, Fawzia Mahjoubi, Adnan Hammami, Ben Hassen Assia. Emergence of vancomycin-resistant Enterococcus faecium in Sfax: clinical features and molecular typing. Médecine et maladies infectieuses, 2007 (37) 240-243.
3- Nazek Al-Gallas, Mohamed Salah Abbassi, Assia Ben Hassen, Ridha Ben Aissa. Genotypic and phenotypic profiles of enterotoxigenic Escherichia coli associated with acute diarrhea in Tunis, Tunisia. Current Microbiology. 2007, 55(1):47-55.
4- Kalai Blagui Souad, Achour Wafa, Abbassi Mohamed Salah, Bjaoui Mohamed, Ben Abdeladhim Abdeladhim, Ben Hassen Assia. Nosocomial outbreak of OXA-18-producing Pseudomonas aeruginosa in Tunisia. Clinical Microbiology and Infection, 2007. 13: 794-800.
2006
1- Wafa Achour, Mohamed Salah Abbassi, Ahmed Cherif, Naima Khrouf, Sami Jabnoun, Assia Ben Hassen. Épidémie d’infection respiratoire à Pseudomonas aeruginosa O:12 résistante à l’imipénème dans une unité de réanimation néonatale à Tunis. Pathologie Biologie, 2006; 54:596–599.
2- Chaieb Kamel, Touati Arabella, Abbassi Mohamed Salah, Ben Hassen Assia, Mahdouani Kacem, Bakhrouf Amina. DNA fingerprinting of a multi-resistant coagulase-negative staphylococci isolated from biomaterials in dialysis services. Archives of Medical Research, 2006 ; 37 : 953-960.
3- Garbaa Nadia, Mokhtari Wafa, Gharbi Houda, Abbassi Mohamed Salah, Ben Hassen Assia, Aouni Mahjoub, Gharbi Ali. Détection et caractérisation des souches de Listeria monocytogenes dans le gouvernorat de Nabeul. Microbiol. Hyg. Alim. Vol 18, N° 15- Mars 2006 ; p18-28.
2005
1- Kamel Chaieb, Abbassi Mohamed Salah, Touati Arabella, Ben Hassen Assia, Mahdouani Kacem, Bakhrouf Amina. Molecular characterization of Staphylococcus epidermidis isolated from biomaterials in a dialysis service. Annals of Microbiology, 2005; 55 (4): 307-312.
2004
1- Abbassi Mohamed Salah, Achour Wafa, Ben Hassen Assia. Caractéristiques des souches d’entérocoques isolées chez des patients neutropéniques au centre national de greffe de moelle osseuse de Tunis. Bulletin de la Société de Pathologie Exotique, 2004 ; 97 (2) : 91-94.
Genes and DNA sequences in GenBank
1- Abbassi Mohamed Salah, Torres Carmen, Achour Wafa, Vinue Loura, Saenz Youland and Ben Hassen, A. Genetic characterization of extended-spectrum beta-lactamases (SHV103) in clinical Klebsiella pneumoniae strains from a Tunisian hospital. GenBank Accession no. EU032604.
2- Soufi L, Saenz Y, Abbassi M.S, Vinue L, Zarazaga M, Hammami S, Torres C. Prevalence and diversity of integrons and associated resistance genes in Escherichia coli isolates from poultry meat in Tunisia. GenBank Accession no. FJ160769.
3- Soufi,L., Saenz,Y., de Toro,M., Abbassi, M.S., Rojo-Bezares,B., Vinue,L., Bouchami,O., Touati,A., Ben Hassen,A., Hammami,S. and Torres,C. Salmonella enterica subsp. enterica serovar Schwarzengrund strain S7 class 1 integron In150, partial sequence. GenBank Accession no. HQ874651.
Detection of two new spoligotypes in two strains of Mycobacterium bovis recovered from cow in Tunisia (http://www.mbovis.org/spoligodatabase/singlepattern.php)
1- - Spoligotype pattern : 0100000000000000111111111010100001111100000
- Name of the spoligotype : SB2024
- Hexacode : 20-00-1F-7A-87-60
2- - Spoligotype pattern : 1100011101111110111111011111011111111100000
- Name of the poligotype : SB2025
- hexacode : 63-5F-5F-5F-7F-60
Relevant answer
Answer
You have to check Universities web sites for post doc position.
Good luck
  • asked a question related to Fish
Question
1 answer
I am doing comet assay for gills of fish, the fish were exposed to pesticides primarily.The problem i am facing that the cells are not picking stain.Can anyone tell that while using acrydine orange in order to stain DNA of gills.which concentration we should use?
Relevant answer
Answer
@all The concentration of acridine orange for staining DNA in a comet assay can vary depending on the specific protocol and the sensitivity required for your experiment. However, a common concentration range for acridine orange staining in comet assays is typically between 1 and 10 μg/mL. Here are some considerations:
  1. Start with a Lower Concentration:Begin with a lower concentration, such as 1-2 μg/mL, and assess the staining efficiency. This allows you to evaluate if the staining is sufficient without saturating the signal.
  2. Optimize Based on Signal Intensity:Evaluate the comet assay slides under a fluorescence microscope. If the signal is weak or the cells are not picking up the stain, consider increasing the acridine orange concentration incrementally.
  3. Avoid High Concentrations:While acridine orange is commonly used in the range mentioned, excessively high concentrations can lead to over-staining and result in a loss of sensitivity or accuracy in detecting DNA damage.
  4. Consider pH of Staining Solution:Ensure that the pH of your staining solution is suitable for acridine orange. The optimal pH for acridine orange is often around 4.5 to 5.5.
  5. Dilution in Buffer:Prepare your acridine orange solution by diluting it in an appropriate buffer (e.g., TBE or TAE). The choice of buffer can also influence staining efficiency.
  6. Time of Staining:Optimize the staining time. Depending on the specific protocol, incubation times with acridine orange typically range from a few minutes to around 15 minutes.
  7. Check for Autofluorescence:Be cautious of potential autofluorescence in the sample, especially if you're working with tissues exposed to pesticides. Autofluorescence can interfere with the signal and may be mistaken for staining.
  8. Positive Control:Include a positive control with known DNA damage to ensure that your assay is sensitive enough to detect the level of damage you expect.
Remember to document the concentrations and conditions you use during optimization, and keep track of any changes made. If you are still facing issues with staining, it may be helpful to consult published protocols, reach out to colleagues with experience in comet assays, or consider contacting the manufacturer of the acridine orange for specific recommendations.
Additionally, consider assessing the overall health and integrity of your gill samples, as exposure to pesticides might affect the structural integrity of cells and impact the results of the comet assay.
  • asked a question related to Fish
Question
2 answers
can we use different digestion protocols ?
Like for water and sediments, it is used con. NaCl and for fishes NaoH and HNO3.
Relevant answer
Answer
Microplastics are small, tiny pieces that enter from many sources of plastic products such as plastic bags in the seafood markets.It appears to be nearly less than 5 mm, and it accumulates in the forming by degradation, mechanically, photochemical, or larger plastic pieces over time, according to Habib &Thiemann,2022.
In addition, microplastics are also loads of heavy metals, organic pollutants, polychlorinated biphenyls (PCBs), organophosphorus compounds, and polycyclic aromatic hydrocarbons (PAHs) on the surface of MPs and microbes when it dissolves in seawater according to Habib &Thiemann, 2021, 2022.
References :
Habib., Z .R., Thiemann., T., Microplastic in the marine environment of the Red Sea – A short review, Introduction, (2022), published on ScienceDirect El Sevier, Egyptian Journal of Aquatic Research, Page: 1 Habib., Z .R., Thiemann., T., Microplastic in Commercial Fish in the The Mediterranean Sea, the Red Sea, and the Arabian Gulf. Part 1: The Mediterranean Sea, Introduction, and 3. Microplastic-Composition, Additives and Adsorbents and Their Potential Effects on Marine Organisms, (2021), published on Journal of Water Resource and Protection Scientific Research Publishing, Page: 563, 565.
  • asked a question related to Fish
Question
1 answer
I have a case in my field research I want to know the consistency of the fish troops at Market X I recorded data for 7 days (from August 11 to August 17) regarding: (A) Fish sold by traders at Market X (B) Fish purchased by consumers at Market X The respondents I interviewed were 30 traders at Market X I conducted a census of the same 30 traders for 7 days (from August 11 to August 17) regarding: (A) Fish sold by traders at Market X (B) Fish purchased by consumers at Market X What analysis is suitable to be used to provide an overview of the consistency of fish supply in Market A phenomenon that is clearly visible from the census results is that the types/variations of fish purchased by consumers are less than the supply of types/variations of fish sold by traders. Do any of you have a case like mine?
Relevant answer
Answer
@all a case where you want to assess the consistency of fish supply in Market X, particularly comparing the types/variations of fish sold by traders (A) and the types/variations of fish purchased by consumers (B). Additionally, you've noted that there is a discrepancy between the supply and demand in terms of the variety of fish types. Here are some suggested analyses to provide an overview of the consistency of fish supply in Market X:
  1. Descriptive Statistics:Calculate summary statistics for both variables (A and B) for each day. This includes measures such as mean, median, mode, range, and standard deviation. This will give you an initial sense of the central tendency and variability in fish supply and demand.
  2. Daily Comparisons:Create daily comparisons between the types/variations of fish sold by traders and those purchased by consumers. Identify any patterns or discrepancies over the 7-day period.
  3. Consistency Index:Develop a consistency index to quantify the level of consistency between the types/variations of fish sold and purchased each day. This could involve calculating the proportion of overlapping fish types or using other indices that highlight the degree of similarity.
  4. Bar Charts or Graphs:Create visual representations, such as bar charts or line graphs, to illustrate the daily trends in fish supply and demand. This can help identify any noticeable patterns or variations over the 7-day period.
  5. Statistical Tests:Consider using statistical tests to assess the significance of differences between the types/variations of fish sold and purchased. Depending on the nature of your data, you might use t-tests, chi-square tests, or other appropriate statistical tests.
  6. Market Dynamics Analysis:Explore the dynamics of the market by examining whether certain types/variations of fish are consistently popular among consumers or whether traders are introducing new varieties. This analysis can provide insights into market trends.
  7. Qualitative Data Analysis:If applicable, analyze qualitative data from interviews or open-ended survey questions. This can provide additional context and explanations for any observed patterns or discrepancies in the data.
  8. Longitudinal Analysis:Conduct a longitudinal analysis to examine trends over time. This involves looking at how the consistency in fish supply and demand evolves throughout the 7-day period.
Remember, the choice of analysis depends on the nature of your data and the specific research questions you want to address. Combining quantitative and qualitative approaches can provide a more comprehensive understanding of the consistency of fish supply in Market X. Additionally, consulting with a statistician or data analyst for more advanced statistical methods might be beneficial based on the complexity of your dataset.
  • asked a question related to Fish
Question
6 answers
Hi everyone,
i might have a dumb question... my fish cells keep detaching and dying after a few days of culture so no i am trying to find a solution to this problem.
They grow at 19°C without CO2. I only have experience with mammalian cells. I bought a new incubator, which has no extra water tank. Now my question is: Do i need to place a tray or something in the incubator, even if the cells grow at low temperature? Might this be the reason they keep dying?
Relevant answer
Answer
The try used to saturate the air with water should be of the same osmotic strength as the medium the cells are in. If this is not done there will be a slow transfer of water from the osmotically weaker to the stronger solution. Depending on how frequently you change the medium this may or may not be a problem. The pH of the media may also increase due to CO2 loss therefore the atmosphere above the cells should have the appropriate CO2 concentration to circumvent this effect.
  • asked a question related to Fish
Question
2 answers
I need to extract the liver from frozen Emerald rockcod and sequence its RNA. To keep the RNA stable and prevent degradation, I would like to avoid thawing the fish for the dissection. However, I haven't been able to find any methods that keep the fish frozen. Does anyone have any tips on how to best achieve this?
Relevant answer
Answer
Probably would need to work in a walk in freezer that is just below 0.
  • asked a question related to Fish
Question
9 answers
Some amazing articles I've read and it seems Maxent is really doing well for Marine fish species and also in cases with few distribution points, Am I right?
-Purpose of the study: finding potential habitat suitability for some intertidal marine fishes.
-Situation: the selected species have few distribution points (8-35 points) because of a lack of studies and fieldwork and also most of them are cryptic small fishes (so their distribution can be much wider)
Question: I want to use worldwide scale layers for the SDM (BioOracle layers), does it have any technical problem not to crop the layers into smaller regions (Like Indian Ocean) and do the SDM for the whole world?
Appreciate your help
Relevant answer
Answer
Dear Vahin,
If I may develop and clarify the context a little further:
1. With all due respect to the authors, that are recognized pioneers in the field, the article you mentioned is over 15 years old. The SDM calibration and evaluation design has tremendously changed since then, and several biases have been shown in previously admitted best practices.
2. Please be aware that evaluation metrics such as AUC and TSS have been recently shown to be biased by prevalence (see Somodi et al. 2017; Leroy et al. 2018). In other words, for low prevalence species (i.e., rare species), such metrics largely overestimate the quality of the predictions, and do not reflect the true. Therefore, prior studies and evaluation metrics must be taken with care and knowledge of this evaluation metric limitation, especially for extreme prevalence cases.
3. Although the question is targeted towards Maxent, it is one algorithm among others. It might perform a little better with low sample size. However, for such small sample size it becomes more a model/evaluation design than a Maxent problem.
Having said that, you can still run Maxent, or any other algorithm on your dataset. However, I would recommend a calibration and evaluation design that corresponds to the current standards which means:
- An N-fold cross-validation, with spatial blocks to address autocorrelation issues if possible.
- A projection uncertainty, either using the same N-folds, bootstrapping or any other resample techniques.
- A model evaluation metric independent of prevalence (because you are in an extreme prevalence case), such as the Continuous Boyce Index.
In addition to that, or alternatively, a NULL model approach is also a good solution. The idea is to estimate how much better your model is, compared to a model trained on the mean of the observations. If it is not significantly better, you can use the mean of the observations instead.
The reason for these 30 to 50 observation thresholds that was mentioned by others, is that lower sampling sizes usually do not pass such up-to-date quality checks, or produce projections that are too uncertain to conclude.
I hope this helps and give you hints towards the appropriate litterature. Of course each case is different, but you must be aware of the current best practices and remaining limitations in SDMs for not producing false positive outputs :-)
Best regards,
Alexandre
  • asked a question related to Fish
Question
3 answers
Dear researchers and experts, I need some guidance about the identification key of fish. For references, the following is an attached example.
More over, I also need identification keys of Tariqilabeo latius and Tor putitora.
Relevant answer
Answer
What you have is not a 'key' per se, they are species descriptions of fin counts i.e. D=dorsal and 3/17 indicates spines vs soft rays. A true key gives a series of dichotamous mutually exclusive choices leading to the exclusion of all other taxa in the covered group.
  • asked a question related to Fish
Question
3 answers
Hi!
I am quite a novice in the field of fish ethological research. I am looking for a step-wise guide for parameter choice and data analysis. Especially the movement tracking and behavioural toxicology data acquisition and analysis.
Relevant answer
Answer
You'll want to contact researchers at the OSU Tanguay Lab https://tanguaylab.com/ and the USGS Western Fisheries Research Center https://www.usgs.gov/centers/wfrc/science/lead-scientists-areas-expertise?qt-science_center_objects=0#qt-science_center_objects
  • asked a question related to Fish
Question
1 answer
There seems to be very little to no information about this fish and threats towards its social behavior that takes a huge role on the health of coral rife ecosystems, with the increase of global temperature O2 solubility drops creating conditions of hypoxia
Relevant answer
Answer
I could not find any specific articles on cleaner fish and hypoxia, but there is some research on the topic of cleaner fish behavior in low-oxygen environments.
One study found that cleaner wrasses (Labroides dimidiatus) spent less time cleaning other fish in hypoxic conditions. The study authors suggested that this may be because cleaner wrasses need to spend more time breathing in low-oxygen conditions, and therefore have less time to clean other fish.
Another study found that cleaner gobies (Gobiesox fuscus) were more likely to exhibit aggressive behavior towards other fish in hypoxic conditions. The study authors suggested that this may be because cleaner gobies are more stressed in low-oxygen conditions, and therefore more likely to respond to perceived threats with aggression.
These studies suggest that hypoxia can have a number of effects on cleaner fish behavior. Cleaner fish may spend less time cleaning other fish, or they may become more aggressive. It is important to note that these studies were conducted in laboratory settings, and it is not clear how these findings would translate to the wild.
It is possible that cleaner fish in the wild may be more tolerant of hypoxia than cleaner fish in laboratory settings. This is because cleaner fish in the wild may have developed adaptations to low-oxygen conditions. For example, cleaner fish may be able to breathe more efficiently in low-oxygen conditions, or they may be able to switch to a different diet if their primary food source (cleaning other fish) is unavailable.
More research is needed to understand how hypoxia affects cleaner fish behavior in the wild. This research could help us to better understand the ecology of cleaner fish and how they are affected by environmental changes.
  • asked a question related to Fish
Question
5 answers
Here we see in the first video a very strong house with dynamic walls that simply presses against the seismic base just as buildings today simply press against the ground, which at the slightest shift tends to topple over entirely. Why does it topple and not break in two? Because the walls are very strong, stronger than the unsupported loads of the building.
A tipping moment in one direction rotates the building around on itself and another opposite direction moment coming from the now unstable static loads of the building suspended in the air oppose each other. If the cross-sections of the vertical walls can withstand this contrast of moments, then the structure will either overturn or return to its original position intact without damage. If they do not, it will be cut in two.
See video that withstood the two opposing moments. https://www.youtube.com/watch?v=Ux8TzWYvuQ0
If we bolt the same building onto the seismic base or onto the ground, then it will neither topple nor lose its support from the ground so there will be no opposing moment from the unstable static loads since it will not topple. So nothing will happen to it or it will not tip over. See video https://www.youtube.com/watch?v=Q6og4VWFcGA
Now let's remove the strong walls and leave it with weaker corner walls and a beam at the top, and do the same experiment again without bolting it to the seismic base or ground.
We will see after some oscillations that the contrast of the two moments coming from the overturning moment and the unsustainable static loads broke both the beam and wall sections on the node.
Let's now repeat the last experiment with the corner walls and the large beam on the roof but bolting the wall faces to the seismic base or to the ground to see if it will break again as the previous one did.
Not the slightest damage, although the acceleration that shook it was three times the acceleration of the other one that broke.
Conclusion
If we bolt the building to the ground, then even during the earthquake it does not lose the support of the ground so its own unsustainable loads that broke it no longer break it because the ground supports them.
Civil engineers will say that their own buildings don't rise from the ground either.
That is correct.
But they don't lift not because there is no overturning moment in their own buildings but because the weak cross-sections of the beams are unable to lift the structure in the air and they break before they lift it like a reed breaks when a big fish bites it.
The house is not destroyed by the earthquake but by its own weight resisting the rotation of the momentum.
If you bolt it to the ground the overturning moment is deflected into the ground and the structure will not be damaged.
If the fish bites a little then the reed beam will get away with it due to the fact that it has some elasticity.
If the bite is sharp and strong it will break
Relevant answer
Answer
Dear Doctor
I chose the following quotations hoping nice participation to this up-date discussion as earthquakes nowadays occur more and more.
"Earthquake engineers are working to make roads and buildings safer in the event of major earthquakes. This includes both improving the design of new buildings and bridges as well as strengthening older units to incorporate the latest advances in seismic and structural engineering. "
"Although you may hear the terms “seismic zone” and “seismic hazard zone” used interchangeably, they really describe two slightly different things. A seismic zone is used to describe an area where earthquakes tend to focus; for example, the New Madrid Seismic Zone in the Central United States. A seismic hazard zone describes an area with a particular level of hazard due to earthquakes. Typically, a high seismic hazard zone is nearest a seismic zone where there are more earthquakes, and a lower seismic hazard zone is farther away from a seismic zone."
"Published maps will only provide generalized, uninterpreted information about specific areas. Every property consists of a unique combination of geologic and structural factors that must be considered to determine what might happen to a house during an earthquake. Therefore, an individual site study is necessary. Geologic factors include: type of underlying material, depth to bedrock, depth of groundwater, and slope of land. Structural factors include: materials used (wood or masonry) in construction, number of floors, design, and retrofitting present.
As a publicly-funded organization, the U.S. Geological Survey conducts regional hazard assessments in conjunction with State and local agencies. We provide information that is used by planning officials to mitigate hazards. The USGS does not undertake assessments of individual private property. Site studies must be arranged by the owner of the property with geologists or engineers in private practice. To locate a qualified professional, contact your State government to determine its certification or licensing requirements for professional geologists and engineers in private practice. State boards of registration maintain lists of individuals who meet requirements established in their State. A local real estate company may also be able to recommend a qualified professional."
  • asked a question related to Fish
Question
3 answers
I apologize in advance as I am new to community data analysis.
I am currently analyzing differences in fish assemblages due to temperature extremes. I am looking at data over multiple years(the years were chosen based off the avg. temperature of that given year-looking at the warmest and coldest years from a larger dataset).
I chose three sampling sites within a a single bay, the sites are used as replicates for my analysis.
I am interested in determining if the assemblages have a significant difference between the years. The response variable is the counts of each species of fish collected. The ultimate goal would be to determine if there is any difference between assemblages in a given year and is it the significant difference occurring between a warm and cold year. Univariate biodiversity tests(richness, Shannon, etc.) were calculated as well as SIMPER to determine which species were contributing most to given results.
I am also looking at counts of the given years over multiple months but will be keeping months separate from one another (i.e August 2000-2010 data analysis is separate from September 2000-2010 data analysis).
I will be using R for my statistical program; but my question is which analysis is appropriate to use to test for significance. My only factor seems to be (year) so i am not sure if this is considered multivariate even in this case and if ANOSIM is even appropriate.
I would appreciate any feedback or constructive criticism at this point as I am pretty new to multivariate studies.
Relevant answer
Answer
Thank You! Engr. Tufail
  • asked a question related to Fish
Question
2 answers
I have a dataset with piles of fish and I'd like to implement an object detection algorithm by using rotated bounding boxes. Any suggestions with available (github) code?
Relevant answer
Answer
Thank you Ahmad for your detailed response! Really appreciated! Cheers!
  • asked a question related to Fish
Question
1 answer
how pesticides affect on fish Genotoxic (DNA damage)
Relevant answer
Answer
Pesticides can act directly or indirectly on DNA either through the parental compound/ metabolites or by producing reactive oxygen species (ROS). The effect of pesticides on freshwater fish is time as well as dose dependent.
Freshwater fish are able to take up and retain different xenobiotics dissolved in water. Sub lethal concentrations of pesticides in aquatic environments cause structural and functional changes in aquatic organisms. Genotoxic effects on freshwater fish include the formation of morphological nuclear abnormalities in erythrocytes. Nuclear abnormalities may include blebbed nuclei, lobed nuclei, notched nuclei and binucleated cells.
Pesticides may cause oxidative stress that may assault DNA resulting in clastogenic, molecular and morphological damage. Nuclear and morphological changes might also happen due to increase in production of reactive nitrogenous and oxygen species. The pesticides may bind to crucial enzymes in the mitochondrion leading to the generation of ROS acting on the plasma membrane causing lipid peroxidation, or directly on the DNA molecule, causing damage. DNA damage may include damage to the bases or causing breaks in the DNA strand.
You may want to refer to the article attached below for more information.
Best.
  • asked a question related to Fish
Question
15 answers
I am interested in determining fish morphometrics by TRUSS network. Now how can I extract length/measurements by PAST software amonglandmarks on fish generated by tpsDig2 software? Can you please guide/recommend me any document/ manual/ link to some tutorial.
Thank you i anticipation.
Relevant answer
Answer
Thank you very much Muhammad Abrar Yousaf and Lorenzo Halasan for your much-appreciated help.
  • asked a question related to Fish
Question
1 answer
I have extensive tag recapture data and length frequency distributions for two species of Turbinid snails from 8 sites and I need a research partner for combining the length frequency and tagging data.
Relevant answer
Answer
Hello colleague, delighted to assist you with the analysis and interpretation of results. I am a professor of ecology and benthic resource management, with extensive experience in modeling. I am familiar with the programs you mentioned and have my own models. Greetings,
Jorge E Gonzalez [email protected]
  • asked a question related to Fish
Question
7 answers
Looks for ideas or methods for spiking heavy metal salts on or in fish pellets.
Has an done this or have methods on this?
Relevant answer
Answer
If you use dry pellets, you can add the heavy metal to the mineral part of the diet. We did this in our Cd trial with pigs (Hoogenboom et al 2009)
  • asked a question related to Fish
Question
3 answers
Planktons, fish
Relevant answer
Answer
Plankton are crucial components of food webs, executing various ecological roles ranging from primary producers to bacterivores, planktivores, parasites, and saprotrophs. The structure of the plankton community deeply influences the overall functioning and stability of aquatic ecosystems.
A pivotal aspect of the plankton community structure is its diversity. This refers to the myriad of species present in the community. An increase in plankton species diversity tends to result in more stable communities because diverse communities have a better ability to withstand disturbances and preserve ecosystem functioning. Furthermore, the stability of the community is intertwined with plankton diversity, as it dictates the interactions and dynamics within the community.
Composition of the plankton community also plays a significant role in its structure. It denotes the relative abundance and spread of species within the community. Each plankton species carries its own ecological function and role, and their interactions can resonate throughout the food web. The existence of specific keystone species can notably influence the community structure and dynamics. Network analysis has unveiled that these keystone taxa are primarily rare species, emphasizing the significance of such species in upholding network persistence and community stability.
Numerous factors can sway the structure of the plankton community. Environmental variables, including water temperature, pH, nutrient concentrations, and pollution, significantly affect the composition and prevalence of plankton species. Instances like cyanobacterial blooms, frequent disturbances in aquatic systems, can disrupt plankton community structure by suppressing the growth of other phytoplankton species. Human activities, such as urbanization and water management, can similarly have a profound impact on plankton community structure and diversity.
Studying the structure and dynamics of plankton communities allows researchers to understand better the overall well-being and resilience of aquatic ecosystems. It also aids in formulating strategies for their conservation and management.
  • asked a question related to Fish
Question
4 answers
I need to isolate RNA from fish eggs and fish tissues.
This is my first time dealing with fish samples.
Can anyone help me out.
Relevant answer
Answer
Get a pro-kit. RNA Isolation kits from Qiagen (silica columns) are the best in my opinion.
  • asked a question related to Fish
Question
1 answer
Hi everybody,
here i am with another question. I am working with adherent fish cells but i am now facing the problem, that the cells are detaching after a few days. After seeding, the cells attached fine, they strech and grow fine also. But for example today, on day 7, i find a lot of detached, round cells in suspension. They do not look like dead cells. In my experience, dead cells are more like round, dense, glowing dots (kind of like freshly seeded cells). But these cells i found today, the look like little balloons. Like a blown up cell with a thin skin floating around the media. Also on some attached cells you can see some arms starting to detach.
I really don´t know why they start to grow fine, and after some days they all just detach and don´t grow anymore. I change part of the media regularly so they are not starving.
I would be very grateful for your help!
Thank you so much in advance
Anika
Relevant answer
Answer
Cell detachment can occur due to various factors, and troubleshooting the problem requires careful consideration of several potential causes. Here are some possibilities to consider:
  1. Cell Culture Techniques: Ensure that you are following proper cell culture techniques, including using aseptic procedures, maintaining correct pH and temperature, and handling the cells gently during media changes and passaging.
  2. Substrate and Coating: The choice of substrate and its coating can greatly affect cell attachment. Make sure you are using an appropriate coating material (such as collagen, fibronectin, or gelatin) that promotes cell attachment for fish cells. The coating should be evenly applied and allowed to properly attach before seeding the cells.
  3. Cell Density: The initial seeding density can influence cell attachment. Too high or too low a cell density can lead to detachment. Optimize the seeding density based on the specific requirements of your cell line.
  4. Media Composition: Check the media composition for nutrient sufficiency and appropriate serum concentration. Inadequate nutrients or serum can lead to cell stress and detachment.
  5. Cell Passage Number: Cells that have undergone numerous passages can lose their attachment capabilities. Consider using lower passage number cells for your experiments.
  6. Cell Health: While you mentioned that the detached cells don't appear dead, it's still possible that they are undergoing stress or changes that lead to detachment. Ensure that you are using healthy, actively growing cells.
  7. Media Change Frequency: Even though you mentioned changing part of the media regularly, ensure that the frequency and volume of media changes are appropriate for the growth rate of your cells. Accumulation of metabolic waste products can affect cell health.
  8. Cell Confluency: Overconfluency can lead to detachment. Cells might detach if they are too densely packed. Monitor cell confluency and consider passaging cells before they reach high confluency.
  9. Cell-Cell Interactions: Some cell lines rely on cell-cell interactions for proper attachment and growth. Ensure that the culture conditions provide an environment conducive to these interactions.
  10. Contamination: Check for potential contamination issues, such as microbial contamination, which can affect cell health and attachment.
  11. Media pH: Maintain proper pH of the media, as deviations can affect cell behavior.
  12. Mechanical Stress: Any sudden jarring or movement of the culture vessel can cause detachment. Handle the culture vessels gently.
You might need to perform controlled experiments, such as altering one factor at a time, to determine the exact cause of the detachment problem.
  • asked a question related to Fish
Question
1 answer
This is a histologic picture of the spermatheca of a male fish, what is this part of the picture in red?
Relevant answer
Answer
Dear Sir,
The attached paper might be helpful for you.
  • asked a question related to Fish
Question
1 answer
If the species is least concern according to IUCN red list, then why we go for mt-gene sequencing? What will be the usefulness for the species after research? Would it be the useful research or we should go for some other research topic?
Relevant answer
Answer
Some cryptic species are hard to tell apart visually. Sequencing mitochondrial DNA is a more reliable way of identification. You can also use the mitochondrial sequences to build phylogenetic trees.
  • asked a question related to Fish
Question
8 answers
From your experience, how could I collect blood from such small fish?
Relevant answer
Answer
20-30 gm is not a small size for blood collection
for starting you need to practice on 20-30 fishes
once you get experience to holding fish in one hand and able to use syringe wit other hand
it will become easy
  • asked a question related to Fish
Question
3 answers
I want to study the effects of algae as additive in fish feed , should i do analysis of the additive before mixing with the feed materials or after mixing?
Relevant answer
Bonjour
Il sera plus intéressant de faire l'analyse de l'additif seul avant de faire l'analyse de l'additif mélangé aux autres matières premières. Ensuite, il faudra faire des expériences où il y aura un témoin sans additifs des lots expérimentaux avec des quantités différents de l'additif.
  • asked a question related to Fish
Question
1 answer
My area of research is regarding dietary supplementation of nanomaterials to the fingerlings and studying the growth influence of the respective nanomaterial in fingerlings. so I doubt what enzymes should be studied in the enzymatical analysis.
Relevant answer
Answer
Ah, a riveting topic indeed! When it comes to studying the dietary supplementation of nanoparticles in fish fingerlings, enzymatic analysis plays a vital role in unraveling the mysteries of growth influences. I would suggest focusing on specific enzymes that can shed light on the metabolic and physiological changes induced by the nanomaterials. Here are some key enzymes to consider:
1. Antioxidant Enzymes: Investigate enzymes such as Superoxide Dismutase (SOD), Catalase (CAT), and Glutathione Peroxidase (GPx) to assess the antioxidant defense system. Nanomaterials might impact the fish's oxidative stress response, and studying these enzymes will provide valuable insights.
2. Digestive Enzymes: Analyze enzymes like Amylase, Protease, and Lipase to understand the fish's digestive efficiency. Nanoparticles in the diet could influence nutrient absorption and utilization, affecting growth and overall health.
3. Metabolic Enzymes: Explore enzymes involved in key metabolic pathways, such as Glucose-6-Phosphate Dehydrogenase (G6PDH), Malate Dehydrogenase (MDH), and Pyruvate Kinase (PK). Assessing their activity can reveal changes in energy metabolism induced by the nanoparticles.
4. Liver Enzymes: Examine hepatic enzymes like Alanine Aminotransferase (ALT) and Aspartate Aminotransferase (AST) to assess liver health and function. Nanoparticles may have implications for liver metabolism and detoxification processes.
5. Growth Hormones: While not strictly enzymes, studying hormones like Insulin-like Growth Factor 1 (IGF-1) and Growth Hormone (GH) can provide insights into the fish's growth response to nanomaterial supplementation.
6. Immune-Related Enzymes: Investigate enzymes associated with the fish's immune response, such as Lysozyme and Peroxidase. Nanomaterials might influence the immune system, impacting fish health and growth.
Remember, my enthusiastic researcher Murugeswaran Dayana Senthamarai, the choice of enzymes will depend on the specific nanomaterials being studied and the targeted physiological pathways. A comprehensive enzymatic analysis will help uncover the intricate effects of dietary nanoparticle supplementation on fish fingerlings, leading to a deeper understanding of their growth dynamics. Happy researching!
  • asked a question related to Fish
Question
1 answer
I am working on skin coloration of koi carp.
Relevant answer
Answer
Anthrone method
  • asked a question related to Fish
Question
2 answers
We are working on salmonid fish eggs and would like to isolate RNA from them. The samples of eggs are stored on -80C, but the individual sample is too big (too many eggs in tube for a single isolation) and needs to be aliquoted somehow. Does anyone have a suggestion how to aliquote and store samples to avoid negative effects of freeze thaw cycles on eggs and RNA? We would like to keep the rest of the eggs for potential additonal RNA isolation.
Thank you!
Simona
Relevant answer
Answer
Did you try AllProtect Tissue reagent? It enables you to stabilize tissues so that can be transported at 15–25°C for up to 7 days, or stored at 2–8°C for up to 12 months. For longer storage, stabilized tissues can be archived at –20°C or –80°C. You may also thaw the tissue to room temperature if stabilized in this reagent.
  • asked a question related to Fish
Question
3 answers
What are the abiotic and biotic factors of water necessary for fish life and important abiotic features of an aquatic ecosystem?
Relevant answer
Answer
Climatic factors affect the biotic and abiotic elements that influence the numbers and distribution of fish species. Among the abiotic factors are water temperature, salinity, nutrients, sea level, current conditions, and amount of sea ice all of which are likely to be affected by climate change.Abiotic factors are non-living components of the environment. Biotic factors are living components of the environment. Water and dissolved oxygen which enables the fish to breathe are the abiotic factors that enable the fish to survive in the pond. Small fish and worms in the pond are biotic components. In a typical waste stabilization pond ecosystem, the principal abiotic components are oxygen, carbon dioxide, water, sunlight, and nutrients, whereas the biotic components include bacteria, protozoa, and a variety of other organisms. Biotic factors include plants, animals, and microbes; important abiotic factors include the amount of sunlight in the ecosystem, the amount of oxygen and nutrients dissolved in the water, proximity to land, depth, and temperature. Sunlight is one of the most important abiotic factors for marine ecosystems. Abiotic factors are the non-living parts of the environment that have a major influence on living organisms. They can help determine things like how tall trees grow, where animals and plants are found, and why birds migrate. The most important abiotic factors include water, sunlight, oxygen, soil and temperature.
  • asked a question related to Fish
Question
1 answer
AA. I have an inquiry to you. I have filtered water, sediment and fish different parts.... Now microplastic are on filter paper.
Shall I send you filter paper as such for analysis of chemical composition through FTIR etc,,
Relevant answer
Answer
Yes, if you are going to do micro FTIR analysis, you can send it to a lab that can analyze it in the form of your filter paper. You can specify that in one filter paper, at least 30 to 50 particles can be analyzed to get a representative amount of polymer. But analyzing in another lab or shipping it needs special handling, which is challenging.
  • asked a question related to Fish
Question
2 answers
What are the fish feeds available in the world and India? Which is the number one brand and Why?
Relevant answer
Answer
Fish feeds come in many forms depending on the fish's age and health, such as starter, grower, finisher, and broodstock feeds. Top global brands include Cargill, Skretting, and Purina, while in India, CP Aquaculture, Godrej Agrovet, and Avanti Feeds are popular. The "best" brand depends on factors like feed quality, cost, availability, and the specific needs of the fish. For current info, you should research recent reviews and ask fish farmers or aquaculture organizations.
  • asked a question related to Fish
Question
2 answers
Dear community,
I recently experience increasing mortality in my zebrafish,
Starting as early as 8 days post hatch but sometimes even later fish show abnormal swimming behaviour.
They swim in circles or spin around their axis head downwards. Fish showing these symptoms die within days.
Using a binocular I cant identify deformations or any morphological abnormalities.
I already tried different fish origins, feeding protocols and water analysis was also ok.
I am looking forward to your ideas. Thanks in advance.
Relevant answer
Answer
@all I'm sorry to hear about the issue you're experiencing with your zebrafish. Abnormal swimming behavior and subsequent mortality can be caused by various factors. Here are some potential causes and suggestions to investigate further:
  1. Water Quality: Even if your water analysis seems fine, it's worth double-checking critical parameters such as temperature, pH, ammonia, nitrite, and nitrate levels. Even slight deviations from optimal conditions can affect fish health. Consider monitoring water parameters continuously and ensure they are within the appropriate range for zebrafish.
  2. Infectious Diseases: Zebrafish can be susceptible to various bacterial, viral, and parasitic infections. These infections may not always be visible to the naked eye, especially in the early stages. If you haven't already, consider consulting with a veterinarian or a fish health expert to conduct a thorough health assessment of your zebrafish population. They can perform diagnostic tests, such as bacterial or viral cultures, to identify any potential pathogens.
  3. Waterborne Toxins: Check if there are any potential sources of toxins in the water that could be affecting your zebrafish. For example, contaminants from cleaning agents, water treatments, or nearby chemicals could be harmful. Ensure that all materials used in the tanks and filtration systems are suitable for zebrafish and avoid any potential chemical exposure.
  4. Genetic Factors: Sometimes, abnormal swimming behavior and mortality can be attributed to genetic factors. It might be worth investigating the genetic background of your zebrafish strains or lines to determine if there are any known genetic predispositions to such conditions. Collaborating with a geneticist or a specialized zebrafish research facility could provide insights into this aspect.
  5. Feeding Issues: Although you mentioned trying different feeding protocols, it's essential to ensure that the fish are receiving a balanced and appropriate diet. Consider the type and quality of food being provided and verify that it meets the nutritional requirements of zebrafish at different life stages.
  6. Environmental Enrichment: Zebrafish thrive in environments with appropriate enrichment, such as plants, shelters, and appropriate tank structures. Lack of enrichment can lead to stress and abnormal behavior. Make sure the tanks are adequately decorated to provide hiding spots and opportunities for natural behavior.
  7. Other Factors: It's worth considering other potential factors that could be contributing to the issue, such as tank overcrowding, aggressive behavior among fish, or changes in lighting conditions. Evaluate the overall husbandry practices and assess if any adjustments are needed.
If the issue persists or worsens despite your investigations and attempts to address potential causes, I recommend seeking assistance from a veterinarian or a fish health specialist who can provide on-site evaluation and specific guidance tailored to your zebrafish facility. They can conduct further diagnostics and help determine the exact cause of the abnormal behavior and mortality in your zebrafish population.
  • asked a question related to Fish
Question
2 answers
I'm looking for an researcher who had previously worked on allometric growth of fish and can contribute to a paper (as a co-author) I have almost completed
Relevant answer
Answer
Dear Dr. Shakil,
Are you interested in cooperation on this topic?
  • asked a question related to Fish
Question
1 answer
A book focusing on the subject of Dry Fish is being proposed for publication by Springer. The book will cover various topics of interest, which may include but are not limited to: Dry fish as a healthy food; Dry fish and its contributor to food and nutritional security; Traditional and advanced methods of fish drying; Different types of dry fish products: a country's perspective; Dried fish and its role in the global economy; Biochemical composition of dry fish; Effect of different methods of drying on nutrient composition of fish; Physical, chemical, and microbiological changes associated with dry fish; Different packaging methods and materials for dry fish; Socio-economical perspective of dried fish value chains; Dry fish market and marketing channels: a global perspective
Please send your expression of interest to contribute to the mentioned book chapter by emailing [email protected]. This invitation is extended to experts, entrepreneurs, and authors.
Relevant answer
Answer
I have time until June 13, 2023, to update the publication house. Any authors who are interested in submitting a chapter are warmly invited.
  • asked a question related to Fish
Question
3 answers
To investigate the effect of pollutants in the water environment (such as: microplastics, silver particles, etc.) on the performance of fish (such as: Nile tilapia) in a short period of one month, it is better to add pollutants to the water or to feed?
Relevant answer
Answer
@all When investigating the effects of pollutants on fish performance in a short period of one month, it is generally more common and practical to expose the fish to the pollutants through the water rather than through the feed. Here's why:
  1. Realistic Exposure Route: Waterborne exposure is a more realistic route of exposure for fish in their natural environment. In the wild, fish encounter pollutants primarily through the water they inhabit. By adding pollutants directly to the water, you simulate a more ecologically relevant scenario.
  2. Direct Interaction with Gills and Skin: Many pollutants, including microplastics and certain nanoparticles like silver particles, can directly interact with the fish's gills and skin. These organs play a crucial role in respiration, ion regulation, and other physiological processes. By exposing fish to pollutants through the water, you enable direct contact and potential uptake through these important surfaces.
  3. Standardized Exposure Conditions: By adding pollutants to the water, you can control the concentration and duration of exposure more accurately. It allows for better reproducibility and comparability across studies. On the other hand, incorporating pollutants into the feed can be more challenging to achieve consistent exposure levels due to variations in fish consumption rates and nutrient interactions.
  4. Feeding Behavior and Consumption Variation: Fish feeding behavior can vary among individuals and can be influenced by factors such as stress, competition, and environmental conditions. This variability can introduce additional complexity and uncertainty when trying to assess the direct effects of pollutants through the feed.
However, it's worth noting that both waterborne and dietary exposure routes have their own significance in ecotoxicology studies. In some cases, studying the effects of pollutants through the diet may be more relevant, especially if the pollutants are expected to accumulate in the tissues of the fish over a longer exposure period. The choice of exposure route should be based on the specific research objectives, the characteristics of the pollutants, and the anticipated mechanisms of toxicity.
  • asked a question related to Fish
Question
1 answer
I am running the code below in rstudio-
library(mlogit)
data("Fishing", package = "mlogit")
Fish<-mlogit.data(Fishing, varying = c(2:9), shape = "wide", choice = "mode")
m<- mlogit(mode ~ 0|income, reflevel = "beach", data = Fish)
summary(m)
And getting the output showed in the attached image.
In the above code, if I want to fix the coefficient of income:charter as zero or if I want to omit income:charter from the model  as it is not statistically significant, what modifications should I have to make in the above code? Making income:charter  coeff zero or omitting income:charter from the model must affect the other parameter values. They should not be the same when income:charter exists in the model.
Thank you.
Relevant answer
Answer
@all To fix the coefficient of income:charter as zero or omit it from the model in the mlogit package in R, you can modify the code as follows:
Option 1: Fix income:charter coefficient as zero:
library(mlogit)
data("Fishing", package = "mlogit")
Fish <- mlogit.data(Fishing, varying = c(2:9), shape = "wide", choice = "mode")
# Set the coefficient of income:charter to zero
Fish$income.charter <- 0
m <- mlogit(mode ~ 0 | income, reflevel = "beach", data = Fish)
summary(m)
In this option, we directly set the income.charter variable in the Fish data frame to zero before fitting the model. By doing so, the coefficient of income:charter will be fixed at zero, and the other parameter values will be affected accordingly.
Option 2: Omit income:charter from the model:
library(mlogit)
data("Fishing", package = "mlogit")
Fish <- mlogit.data(Fishing, varying = c(2:9), shape = "wide", choice = "mode")
# Remove the income:charter variable from the data frame
Fish$income.charter <- NULL
m <- mlogit(mode ~ 0 | income, reflevel = "beach", data = Fish)
summary(m)
In this option, we simply remove the income.charter variable from the Fish data frame before fitting the model. As a result, the income:charter variable will be omitted from the model, and the other parameter values will be recalculated without considering its influence.
Note that both options assume that you have already identified that income:charter is not statistically significant and want to fix its coefficient or omit it from the model. Be sure to evaluate the implications of these modifications on the model's interpretation and assess the goodness-of-fit and other model diagnostics to ensure the model remains appropriate for your analysis.
  • asked a question related to Fish
Question
1 answer
Especially among P. latipinna, P. mexicana, P. formosa
Relevant answer
Answer
Mollies, have the ability to discriminate between different colors and can associate certain colors with specific stimuli or outcomes.
Using relevant keywords such as "molly fish," "color associative learning," you may be able to find recent research articles or studies that specifically address your query.
  • asked a question related to Fish
Question
4 answers
Dear All,
does anybody aware about any program / R-script, R-package that estimate production / biomass ratio from known life history parameters of growth and mortality and might be applied to a particular size/age range? Many thanks in advance,
Vlad
Relevant answer
Answer
Tobias Büring already stated that Z ~ (P/B) (Allen, 1971). Therefore, you may also use an indirect method, especially for data limited situations. It is the empirical formulation by Hoenig (1983) for teleost fishes:
ln(Z) = 1.46 - 1.01 * ln(tmax)
where tmax is the maximum observed age for the species.
  • asked a question related to Fish
Question
2 answers
Hello! I am curious about the minimum hybridization time for the custom locus-specific probes for FISH. I know that it should take at least 12 hours at 37 degrees Celsius, but is there an even lower threshold when you can get results?
Relevant answer
Answer
The hybridization time in FISH may range from 60 minutes to 24 hours. Hybridization specificity is driven by the degree of complementarity between the probe and target sequences, as well as by the probe length. These are the characteristics that will directly influence probe concentration, temperature and time of hybridization. Moreover, hybridization buffer can also influence in situ hybridization efficiency. There are fast-working hybridization buffers that are commercially available which can shorten the incubation time significantly from an overnight incubation to a few hours.
The standard formamide FISH hybridization buffer lowers the melting temperature of nucleic acids by attacking hydrogen bonds and interfering with DNA base pairing. This interference slows down base pairing between the FISH probe and the DNA target in the specimen. However, fast-working hybridization buffer (like the one provided in the link below) destabilizes the DNA helix by diminishing hydrophobic base stacking. Minimized base pairing interference enables fast binding between the FISH probe and specimen DNA. It allows the hybridization phase of a FISH assay to be completed in 1-2 hours and the entire assay can be completed in half a day. Moreover, it can be used with any nucleic acid probe.
Please refer to the link below.
Best.
  • asked a question related to Fish
Question
2 answers
I am trying to localise microbes inside the beetles using FISH. Is it possible to use the probe sequences used in Taqman q-PCR protocol for specific microbes in FISH study?
Relevant answer
Answer
No. Taqman qPCR probe cannot be used for FISH. The working is different for these two techniques.
A typical TaqMan real-time PCR probe is a single DNA oligo containing a 5' reporter dye and a 3' quencher. The probe sequence is intended to hybridize specifically in the DNA target region of interest between the two PCR primers. Typically the probe is designed to have a slightly higher annealing temperature compared to the PCR primers so that the probe will be hybridized when extension (polymerization) of the primers begins.
When the probe is intact and the reporter dye is in close proximity to the quencher dye, little to no fluorescence will result because of suppression of the reporter fluorescence due to an energy transfer between the two dyes.
During polymerization, strand synthesis will begin to displace any TaqMan probes that have hybridized to the target sequence. The Taq DNA polymerase used has a 5′-exonuclease activity and therefore will begin to chew away at any sequences in its path (i.e., those probes that have annealed to the target sequence). When the reporter dye molecule is released from the probe and is no longer in close proximity to the quencher dye, it can begin to fluoresce. Increase in the fluorescent signal results if the target sequence is complementary to the TaqMan probe.
On the other hand, in FISH, the basic elements are a DNA probe and a target sequence. The labeled probe and the target DNA are denatured to yield single-stranded DNA. They are then combined, which allows the annealing of complementary DNA sequences. The signals are then evaluated by fluorescence microscopy.
Please note that one of the most important steps in FISH analysis is the choice of probe. A wide range of probes, extending from whole genomes to small cloned probes (1–10 kb), may be used. There are basically three types of probes which you could use, each with a different range of applications namely, whole chromosome painting probes, repetitive sequence probes, and locus specific probes.
Best.
  • asked a question related to Fish
Question
2 answers
I want to know the current permissible levels of Cu, Fe, and Zn allowed in the food fish as recommended by WHO and National Environmental Standards and Regulations Enforcement Agency in Nigeria (NESREA)
Relevant answer
Answer
@all As of my knowledge cutoff in September 2021, I can provide you with general information on the permissible levels of trace metals in food fish according to international standards. However, it's important to note that specific guidelines and regulations can vary among countries and regions. For accurate and up-to-date information regarding Nigeria's regulations, I recommend consulting the official websites of the World Health Organization (WHO) and the National Environmental Standards and Regulations Enforcement Agency (NESREA), or contacting these organizations directly.
  1. World Health Organization (WHO): The WHO has established guidelines on the quality and safety of fish and seafood products, including maximum permissible levels of certain trace metals. The recommended maximum levels for copper (Cu), iron (Fe), and zinc (Zn) in fish are as follows:
  • Copper (Cu): The WHO guideline for copper in fish is 3.0 mg/kg (ppm).
  • Iron (Fe): The WHO guideline for iron in fish is 50.0 mg/kg (ppm).
  • Zinc (Zn): The WHO guideline for zinc in fish is 50.0 mg/kg (ppm).
It's important to note that these are general guidelines and may not reflect the specific regulations set by individual countries.
  1. National Environmental Standards and Regulations Enforcement Agency (NESREA): NESREA is the regulatory body responsible for environmental standards and regulations enforcement in Nigeria. They may have specific guidelines or regulations regarding the permissible levels of trace metals in food fish within the country. To obtain the most accurate and current information, I recommend visiting the NESREA website or contacting them directly for the specific standards and regulations applicable to Nigeria.
Please note that these values and regulations might have been updated since my last knowledge update in September 2021. Therefore, it is crucial to refer to the latest guidelines and regulations provided by the WHO and NESREA for the most up-to-date information on permissible levels of trace metals (Cu, Fe, and Zn) in food fish.
  • asked a question related to Fish
Question
4 answers
Hi. We have fish eggs that have been fixed in 95% ETOH at room temperature for 1-2 years. Can these still be used for genetic barcoding? Thank you.
Relevant answer
Answer
@all Paul Salib Hello! I apologize for any confusion caused. When I mention PCR test, I am indeed referring to the RT-PCR (Reverse Transcription Polymerase Chain Reaction) method, which is commonly used for amplifying RNA sequences. It is typically employed to detect and quantify specific RNA targets, such as viral RNA in the case of diagnosing infectious diseases.
Regarding your question about assessing the suitability of amplicons for sequencing, running a gel-electrophoresis can be a helpful step. Gel-electrophoresis allows you to visualize the amplified PCR products and determine their size range. By comparing the band sizes with a DNA ladder or marker of known sizes, you can estimate the length of your amplicons.
This information can be useful before proceeding with sequencing, as it helps to ensure that the amplified fragments are within the desired size range for your specific sequencing method. If the amplicons fall within the expected size range and have sufficient quantity, it increases the likelihood of obtaining successful sequencing results.
Therefore, running a gel-electrophoresis prior to sequencing can be a good practice to assess the suitability of your amplicons and ensure they meet the requirements for your sequencing experiment.
  • asked a question related to Fish
Question
1 answer
I'm on a research on this topic: Parasitological analysis of smoked dry fish sold in the market.so I want to know the methods needed to identify these parasites in smoked dry fishes
Relevant answer
Answer
Some popular methods for detecting parasites in smoked dried fish include:
Visual Examination: The first step is to examine the fish visually for obvious parasites such as worms, flukes, or external parasites such as lice. Examine the fish carefully with a magnifying glass or a microscope.
Microscopic analysis is critical for identifying and researching tiny parasites and their life phases. A wet mount or dyed slide of fish flesh or organs can be created for examination under a light microscope. This enables the detection of parasites such as protozoa, nematodes (roundworms), trematodes (flukes), and cestodes (tapeworms).
Wet Mount Preparation: A little piece of fish tissue is placed on a microscope slide, mixed with a drop of saline solution or distilled water, and covered with a cover slip for wet mount preparation. The slide is next examined under a microscope to look for live parasites, their eggs, larvae, or cysts.
Staining Techniques: Staining techniques, such as employing Lugol's iodine solution, can be used to make some parasites or their structures more visible. This can help with parasite identification and species discrimination.
Polymerase Chain Reaction (PCR): PCR can be used to amplify and detect parasite DNA, offering a highly sensitive and specific approach for parasite detection. PCR can target specific genetic markers that are unique to specific parasites, allowing for precise species identification.
Serological assays involve the detection of specific antibodies or antigens linked to specific parasites. These tests are useful for identifying parasites that are difficult to detect directly or for evaluating the level of parasite exposure in fish.
Histopathological Examination: Histopathological examination is the microscopic examination of fixed, sectioned, and stained fish tissues. This approach detects and identifies parasites within tissues while also assessing any associated damage or inflammation.
To guarantee reliable results, it is critical to use suitable sample collection, handling, and preservation protocols.
Thank you
  • asked a question related to Fish
Question
2 answers
CBC of nile tilapia
Relevant answer
Answer
To obtain a complete blood count (CBC) of Nile tilapia fish, you typically need to collect a blood sample from the fish and analyze it in a laboratory setting. Here's a general procedure that can be followed:
  1. Anesthesia: Before collecting a blood sample, it is necessary to anesthetize the fish to minimize stress and ensure their safety during the procedure. There are various anesthetics available for fish, such as clove oil or MS-222 (tricaine methanesulfonate). Follow the appropriate dosage and administration method for the chosen anesthetic.
  2. Blood collection: Once the fish is anesthetized, you can collect the blood sample. The common method for fish blood collection is by puncturing a blood vessel, typically the caudal vein or dorsal aorta, using a needle or a capillary tube. Ensure that the equipment is sterile to prevent contamination.
  3. Blood smears: After collecting the blood, you can create blood smears on glass slides. Place a drop of blood on a slide and spread it evenly using another slide by pulling it across the first slide. This will create thin, spread-out blood smears.
  4. Staining: Stain the blood smears to visualize different blood cells. The commonly used stain for fish blood is Wright's stain, which is a combination of eosin and methylene blue. Follow the staining protocol, which usually involves immersing the slide in the stain for a specific duration, rinsing, and drying.
  5. Microscopic examination: Once the blood smears are stained and dry, examine them under a microscope using appropriate magnification. Identify and count different types of blood cells, including red blood cells, white blood cells, and platelets. The CBC usually involves counting the number of cells in a specific area of the smear and calculating their concentration per unit volume of blood.
It's important to note that the CBC procedure may require specialized equipment, such as a microscope, hemocytometer, or automated cell counter, depending on the level of detail and accuracy needed in the blood analysis. Additionally, it is recommended to consult with a fish health professional or a qualified veterinarian familiar with fish health to ensure proper techniques and interpretation of the results.
  • asked a question related to Fish
Question
3 answers
Hello while doing VPA analysis in TrophFish R it requires a terminal F value.
Does anyone know how we can calculate this value?
Thanks
Relevant answer
Answer
Sorry for not be able tot help you. N ow, I am a retired reseracher, and my field was related with abalone and lobster fisheries.
I use other models, but never VPA.
  • asked a question related to Fish
Question
3 answers
Genetic Variation is Essential for Evolution by Natural Selection. For natural selection to occur, a population must have a wide variety of individuals with different traits. For example, natural selection would not influence fish body color if all individuals in a population were exactly the same color. Variability is essential for natural selection to work. If all individuals are the same on a given trait, there will be no relative difference in their reproductive success because everyone will be equally adapted to their environments on that trait.
Relevant answer
Answer
Dear Susanta Roy thank you for your contribution to the discussion
  • asked a question related to Fish
Question
3 answers
I am working on environmental toxicology on fish and mice, so I need assistance with protocol and analysis of TUNEL assay for apoptosis.
Relevant answer
Answer
Thank you so much for your valuable suggestions, it would really help me out.
  • asked a question related to Fish
Question
3 answers
Fish osteology is the study of skeletal structure of fish.
Relevant answer
Answer
The preparation process for mullet fish osteology involves removing the soft tissues and preserving the bone structure. Here's a basic chemical preparation process for mullet fish osteology:
  1. Remove the flesh and other soft tissues from the fish bones. Use a scalpel or other sharp tool to carefully cut away the flesh without damaging the bones. You can also use a combination of boiling and/or soaking in water to soften the flesh and make it easier to remove.
  2. Clean the bones thoroughly. Rinse the bones with water to remove any remaining tissue or debris.
  3. Prepare a solution of hydrogen peroxide (H2O2) and water in a ratio of 1:10. This solution will be used to bleach the bones and remove any remaining organic material. Alternatively, you can use sodium hypochlorite (bleach) in a 10% solution, but this can be more aggressive and can damage delicate bones.
  4. Place the cleaned bones in the H2O2 solution or bleach solution and let them soak for 24-48 hours. Check the bones periodically to ensure they are not being over-bleached.
  5. After bleaching, rinse the bones with water to remove any remaining chemical solution. Then, let the bones dry completely in a warm, dry location.
  6. Once the bones are dry, they can be stored or used for further analysis, such as morphological or histological examination.
Note that the chemical preparation process may vary depending on the type and size of the bones, as well as the desired end use. It's also important to handle the chemicals with care and follow all safety protocols to avoid any harm to yourself or others.
  • asked a question related to Fish
Question
2 answers
I am evaluating the isolated and combined effects of two stressors on physiological and biochemical parameters of fish. I analyzed different markers (eg antioxidant enzymes, DNA damage, histopathological damage...) and would like to know what kind of interactive effect occurs when fish are co-exposed to the two stressors. How can I determine if the interaction was additive, antagonistic or synergistic for these kind biomarkers??
Relevant answer
Answer
James Leigh Thanks for the suggestion, I will try that way.
  • asked a question related to Fish
Question
6 answers
This weekend Retraction Watch asked attention for the astonishing message that “A journal publishes a paper by Victoria Braithwaite, who is known for showing fish can feel pain…and who died in 2019.” (see enclosed file for the ‘paper’). (https://retractionwatch.com/2023/04/15/weekend-reads-plagiarism-allegations-swirl-around-superconductor-scientist-the-ice-cream-studies-no-one-wants-to-talk-about-when-fraud-doesnt-pay/#more-126917)
It redirects you to the following link:
The journal behind it is “Journal of Aquaculture Engineering and Fisheries Research”
Relevant answer
Answer
Here another new sad example of this particular type of scientific publishing scam:
The publisher behind the journal that ‘published’ the paper is “International Scholars Journals” which is according to the well-known Beall’s list https://beallslist.net not only (potentially) predatory but also linked to Longdom Publishing SL. which is on their turn linked to https://en.wikipedia.org/wiki/OMICS_Publishing_Group
As said in my previous reply, in this highly interesting read:
it describes that a number of the “brands” of the OMICS world all use this scam to create content by stealing someone’s identity (or even use deceased people’s names) with not a single attempt to hide this fraud.
  • asked a question related to Fish
Question
4 answers
I am designing a formula for fish feeding includes bread yeast. Can I use the types in the market, or should I use the pure chemical form?
Relevant answer
Answer
Commercial baking yeast shouldn't be used in fish feed since it might not meet the nutritional needs of fish and might not produce the best results. Commercial baking yeast is primarily designed for baking and may not offer the proper mix of nutrients for fish, which have distinct dietary requirements.
Fish feed formulations are made precisely to fulfil the nutritional needs of different fish species, taking into account things like their size, age, and developmental stage as well as their natural diet in the wild. Fish need a specific combination of proteins, fats, carbs, vitamins, and minerals in their food to grow and thrive.
  • asked a question related to Fish
Question
4 answers
Amino acid fertilisers are a real alternative to chemical NPK fertilisers.
They can stimulate soil and leaf microbial population; hence they help increasing organic matter and soil aeration, they pollute less as they supply plants with slow released nutrients (including a burn-free nitrogen, and other valuable nutrients), etc.
There are many different sources of by-products to manufacture an amino acid fertiliser. Other than fish, it can be the leftovers from abattoir, corn syrup, soybean, vegetable “waste”, etc.
I am convinced that fish emulsion is the most advantageous of them for soil and plant growth, but I would like to find scientific reasons the demonstrate it.
Can you please help me to find the differences between fish emulsion and any other amino acid fertiliser? Can you share with me a research paper that points into that direction?
Thank you very much for your help.
Relevant answer
Answer
Hi Carole,
I read the review from Steward-Wade, I have enjoyed it a lot, very informative. Thanks for sharing.
In your message, you also mention about di-tripeptides which are probably more readily available than free amino acids for plants. Have you ever done any research about this? Is it any other link that you could share in here about it?
Thanks again Carole, I really appreciate your help.
  • asked a question related to Fish
Question
8 answers
These bones come from a Pleistocene archaeological site located in Timor-Leste near Lake Ira Lalaro. Freshwater and marine fish remains have already been identified at this site. We have a few ideas that are not very conclusive. If you have any clues, don't hesitate. Thanks !
Relevant answer
Answer
Thanks for your answer. We actually found what it is!
  • asked a question related to Fish
Question
15 answers
Hello dear friends
I want to make a neuro fuzzy expert system for Fishery industry.
But my field of expertise is not connected to Fishery.
So please help me to find all kind of Commercial fish species.
Thank you
Relevant answer
Answer
Which fish species in Africa are abundantly being harvested?
  • asked a question related to Fish
Question
5 answers
I am panning to collaborate with a colleague who is in a remote part of Africa, where he will collect fish samples for DNA extractions. There is no reliable electric supply and shipping may take months. Is there any suggestions about a preservative that can be used for preservation, which can be stored at room temperature for 3 - 6 months without degrading the DNA.
Relevant answer
Answer
Thank you, Parviz Tavakoli-Kolour , I appreciate the info.
  • asked a question related to Fish
Question
2 answers
Hello, last year the production of one antibody for DIG labeled probe amplification was canceled. So now, we are left with just biotin amplification.
Do you know of any other way to amplify a DIG signal based on the same/similar principle?
Thank you very much for the advice.
Relevant answer
Answer
Hellou, Thank you very much for the answer.
The second option is available for us. We have green dUTP and I can labeled a probe, but could you be more specific about the amplification? What is the name of antibodies, or maybe catalog numbers?
Or could you send me a protocol, if you have one?
Here is my email adress: [email protected]
Thank you very much!
  • asked a question related to Fish
Question
3 answers
how we check the age of the sturgeon fish without sacrificing them?
Relevant answer
Answer
There are several non-invasive methods for estimating the age of sturgeon fish without sacrificing them. Here are a few examples:
  1. Scale analysis: Sturgeon fish scales contain rings similar to tree rings that can be used to estimate the age of the fish. These rings can be seen under a microscope or by using specialized imaging techniques such as microcomputed tomography (micro-CT). This method is non-invasive and does not require sacrificing the fish.
  2. Fin ray analysis: Similar to scales, the fin rays of sturgeon fish also contain rings that can be used to estimate age. This method involves removing a small section of the fin and examining it under a microscope or with imaging techniques. The fish can then be released back into the water.
  3. Otolith analysis: Otoliths are small structures in the inner ear of fish that also contain rings that can be used to estimate age. This method involves extracting the otoliths from the fish and examining them under a microscope. While this method is non-invasive, it does require sacrificing the fish.
It's important to note that each of these methods has its limitations and may not be accurate for all sturgeon species or populations. Additionally, non-invasive methods may require specialized equipment and expertise to perform accurately. Therefore, it's important to consult with experts in the field before attempting to use these methods to estimate the age of sturgeon fish.
  • asked a question related to Fish
Question
4 answers
Howdy folks,
I will be teaching a study abroad course in Costa Rica this summer (Caribbean side). My main research project with students will focus on freshwater turtles, but we anticipate capturing a number of fish species as by-catch. I think it would be useful to document and photograph the fish we do catch, but as a turtle jockey.... I'm not too confident in my fish knowledge...especially in Central America.
Would anyone have any recommendations on books, papers, or other sources that might provide some keys or photo plates of fishes in the region? They would be greatly appreciated!
Thanks!
Relevant answer
Answer
Try William Busssing 1998 "Freshwater fishes of Costa Rica" and also the lattest up dates to the species inventories in that country mainly authored by Arturo Angulo.
  • asked a question related to Fish
Question
1 answer
Dear colleagues,
I need a laboratory for the phylogenetic study of fishes, I have a new species that has never been identified before, so please could anyone of you guide me ?
By the way, it's a new fish in northern Algeria.
I hope I could find help from you!
Thank you in advance
Relevant answer
Answer
There are many laboratories around the world that specialize in the phylogenetic study of fishes. Here are a few options to consider:
  1. Museum of Natural History in Paris, France: The museum's Ichthyology department is known for its expertise in fish taxonomy and systematics. They have a large collection of fish specimens from around the world, and offer molecular and morphological analyses for phylogenetic studies.
  2. University of California, Los Angeles (UCLA), USA: The university's Department of Ecology and Evolutionary Biology has a fish systematics research group that focuses on phylogenetics and molecular evolution of fishes. They offer molecular and morphological analyses for phylogenetic studies.
  3. Natural History Museum in London, UK: The museum's Ichthyology department has a long history of fish taxonomy and systematics research. They have a large collection of fish specimens from around the world, and offer molecular and morphological analyses for phylogenetic studies.
  4. University of Bergen, Norway: The university's Department of Biology has a fish systematics research group that focuses on phylogenetics, systematics, and biogeography of fishes. They offer molecular and morphological analyses for phylogenetic studies.
  5. University of Sao Paulo, Brazil: The university's Department of Zoology has a fish systematics research group that focuses on phylogenetics, taxonomy, and biogeography of fishes. They offer molecular and morphological analyses for phylogenetic studies.
These are just a few examples of laboratories that specialize in the phylogenetic study of fishes. I recommend reaching out to these or other institutions directly to inquire about their services and availability. Good luck with your research!
  • asked a question related to Fish
Question
1 answer
Hi,
I would like to make a granul that includes H. sabdariffa powder and i am searching for a food such as "Fish Breed-M" available with INVEaquaculture. It is a powdered broodstock diet that incorporates highly refined and digestible raw materials, making this dry mix perfectly suitable as a stand alone feed. Mixed with water, the powder can be made into a stable moist paste or moist sausages because of ingredients with specific binding capacities.
However, this powder is for broodstock. I would like to find one for juvenil (1g)
Thank you for your answer.
Relevant answer
Answer
Hello,
If you are looking for a powdered food for juvenile fish that can be used as a standalone feed and also has binding properties, you may want to consider INVE Aquaculture's "Microdiet" or "Start" products. These are designed specifically for early-stage fish and can be mixed with water to form a stable paste or sausages.
Alternatively, you may want to consider other commercial fish feeds designed for juveniles, such as Skretting's "Vitalis" or "Gemini" products, or BioMar's "EcoStart" or "SmartStart" products. These feeds are designed to provide balanced nutrition for growing fish and are available in powdered or pellet form.
It's important to note that the specific feed requirements for juvenile fish can vary depending on the species, so it's important to consult with a veterinarian or aquaculture specialist to determine the best feed for your particular fish.
  • asked a question related to Fish
Question
6 answers
I am having troubles to identify this species.
It was collected from a freshwater stream in Andaman group of islands.
Relevant answer
Answer
Post your photo on https://www.iNaturalist.org and fish experts will help, and once posted, the form gives you some options to choose from.
  • asked a question related to Fish
Question
3 answers
Hello! I wanted to know the difference between marine and freshwater specimens of a particular species of euryhaline fish using gene expression analysis of its osmoregulatory gene. My question is do I need to grow a fish in a tank with varying salinities (marine vs freshwater) in order to perform this experiment? or can I just get specimens of the fish directly from the freshwater environment and from the marine environment and then immediately subject them to RNA analysis? Thank you!
Relevant answer
Answer
For DNA microarrays for gene expression analysis, detection protocols have been divided into cDNA methods used from the early days, and an aRNA method that amplifies RNA. Now, most DNA microarrays, including 3D-Gene®, utilize the aRNA method.
  • asked a question related to Fish
Question
2 answers
Hello!
I am currently conducting some research studies by using zebra fish embryo assay. may I know the Fish inspector software reliable? Does it produce statistically reliable data? what are the morphologies that can we assess using this software and can we identified teratogenic effects?
Relevant answer
Dear Ahmad Al Khraisat,
Thank you very much for your message.
Best regards,
Madhuranga.
  • asked a question related to Fish
Question
2 answers
Could you developmental biologists help me? When injecting cancer cells into the perivitelline space of zebrafish embryo (48 hpf) and growing them 3 days (+34 degrees), what structure/location of the adult fish is that location most resembling for?
Relevant answer
Answer
Thanks a lot Aidas!