Science method

Meta-Analysis - Science method

Works consisting of studies using a quantitative method of combining the results of independent studies (usually drawn from the published literature) and synthesizing summaries and conclusions which may be used to evaluate therapeutic effectiveness, plan new studies, etc. It is often an overview of clinical trials. It is usually called a meta-analysis by the author or sponsoring body and should be differentiated from reviews of literature.
Questions related to Meta-Analysis
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I am working on a meta-analysis on framing with cultural-level moderators (e.g. Hofstede dimensions including Individualism-Collectivism and Power Distance) and moderators based on findings in the literature (e.g. health behavior function, behavioral frequency). While the potential mechanisms and theoretical basis of moderations would be different with different moderators, they are highly correlated (r > 0.70, or V > 0.50 for two categorical moderators). What are the possible ways to address the potential confounds between these moderators *in the context* of a meta-analysis? Let's say I find support for moderations with both Moderator A (p < .001) and Moderator B, I am not sure how to know if "significant moderation" of B is due to strong correlations/confounding relationship with A, or if both moderators are really meaningful moderators. Thank you. Would appreciate if there is (ideally R) open data/code/example.
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I just realized the correlations remain very strong (actually, exactly the same) after mean-centering. Then I read this post: https://stats.stackexchange.com/questions/95404/is-centering-a-valid-solution-for-multicollinearity What are the possible solutions to actually address multicolinearity in the context of *multiple-moderator* meta-regression? (Would really appreciate there is R code for me to follow/adapt)
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Dear Experts,
I have a question, I am analyzing data for meta-analysis, is this possible SMD greater than 1 for any study,
I have a study in my data indicate 2 .03 SMD.
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Don't know specific situation,Dare not comment,But you need to analyze from the basic concept of "SMD".
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I am wanting to perform a meta-analysis and some of the articles included only provide baseline and post-intervention mean and standard deviation values for the group. Hence, I´m wanting to calculate the mean and standard deviation of the difference between pre-intervention and post-intervention values within that group. I´ve attached an image to make the explanation easier: if I only have the information in the first 2 columns, is it possible to calculate the 3rd column?
I wonder if there is any way (in STATA or any other software) that this may be calculated.
Thank you very much in advance for your help.
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Thanks for sharing. My question is about the r-value. I saw that you used 0.7. How do I know which value to use in my article?
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Need advice on user-friendly tools to ease meta-analysis process of selecting eligible and fugitive studies
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R statistical environment (R Core Team, 2024) with several flexible packages including my favourite {metafor} package (Viechtbauer, 2010).
1. R Core Team (2024). R: A language and environment for statistical computing. R Foundation for Statistical Computing, Vienna, Austria. https://www.R-project.org/
2. Viechtbauer, W. (2010). Conducting meta-analyses in R with the metafor package. *Journal of Statistical Software, 36*(3), 1–48. https://doi.org/10.18637/jss.v036.i03
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Dear Colleagues,
We are currently conducting a qualitative meta-analysis and looking for qualitative research that is focused on transgender, non-binary, and gender diverse people’s experiences of gender identity development and how their gender functions to support coping with minority stress as well as increasing resilience and flourishing. We are looking specifically at articles that focus on participants in the United States. We are contacting scholars to ask if they have authored or are aware of studies that may meet our inclusion criteria, particularly any new or unpublished studies. Our team will screen the articles to determine if they meet our inclusion criteria. If you know of any studies that may be relevant to our qualitative meta-analysis, please contact or send them to Kelsey Kehoe at [email protected].
Thank you!
Heidi Levitt & Kelsey Kehoe
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Youth Transgender Care Policies Should Be Driven by Science
"In the U.S., some states guarantee minors full access to gender-affirming medical care while others ban such care outright. Instead, states should follow Europe’s example by adjusting policies based on weighing the emerging clinical evidence, writes independent healthcare analyst Joshua Cohen..."
Many references are given in text by hyperlinks provided.
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I'm looking for good (freely-available) resources that guide statistical approaches for conducting meta-analyses; specifically, those addressing (1) which effect size statistic to use in different situations, (2) if and when different effect size statistics (e.g., mean difference, correlation coefficient, etc.) can be combined in a meta-analysis and when they should not be combined
Thanks!
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For resources on statistical approaches for conducting meta-analyses, especially regarding effect size statistics and their combination, you can explore the following:
  1. The Cochrane Handbook for Systematic Reviews of Interventions: This handbook provides comprehensive guidance on conducting systematic reviews and meta-analyses, including detailed discussions on effect size statistics and their appropriate use in different situations. It covers topics like selecting effect size measures, handling different types of data, and combining effect sizes across studies.
  2. The Handbook of Research Synthesis and Meta-Analysis by Harris Cooper, Larry V. Hedges, and Jeffrey C. Valentine: This book offers in-depth discussions on various aspects of meta-analysis, including effect size measures and their interpretation. It provides guidance on selecting appropriate effect size statistics based on the research question and data characteristics, as well as considerations for combining effect sizes from different studies.
  3. and I particularly like this book, which hope will be useful ("Introduction to Meta-Analysis" by Michael Borenstein et al.)
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Hi everyone, for some years now I've been interested in doing meta-analysis in my field of study. I am a botanist, who recently worked in seed biology. during my self-learning, I already knew how to do systematic reviews, but stuck there while I wanted to improve myself in meta-analysis.
Thus, I write to express my desire to reach everyone who may have experience in this topic and is willing to let me learn from their experience. thanks.
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Hi Mr. Kuswantoro,
I believe my response to Blaine Tonkins might provide you with a comprehensive overview of the topic. Hopefully, it proves useful to you.
You can find it here: [Good Resources for Meta-Analysis Techniques](https://www.researchgate.net/post/Good_Resources_for_Meta-Analysis_Techniques)
Best regards.
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Hello everyone, I hope all thing is OK.i have a paper based on meta analysis, please let me know could you help me in statistical analysis of this paper? Best regards
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Dear professor , I would like to thank you for your answer to my researchgate question .I would like to let you know the title of our paper will be "Meta-analysis of application of particle swarm optimization in geophysical data inverse problem solving". I have collected all papers in this field with this format (about 100 papers ) in 8 categories (a,b,c,d,e,f,g,h):The main applications of PSO to the geophysical inverse problem include the interpretation of: a. vertical electrical sounding (VES) (Fernández-Álvarez et al. 2006; Fernández Martínez et al. 2010a; Pekşen et al. 2014; Cheng et al. 2015; Pace et al. 2019b); b. gravity data (Yuan et al. 2009; Pallero et al. 2015, 2017, 2021; Darisma et al. 2017; Jamasb et al. 2019; Essa and Munschy 2019; Anderson et al. 2020; Essa and Géraud 2020; Essa et al. 2021);c. magnetic data (Liu et al. 2018; Essa and Elhussein 2018, 2020); d. multi-transient electromagnetic data (Olalekan and Di 2017); e. time-domain EM data (Cheng et al. 2015, 2019; Santilano et al. 2018; Pace et al. 2019c; Li et al. 2019; Amato et al. 2021); f. MT data (Shaw and Srivastava 2007; Pace et al. 2017, 2019a, c; Godio and Santilano 2018; Santilano et al. 2018) and radio-MT data (Karcıoğlu and Gürer 2019); g. self-potential data (Santos 2010; Pekşen et al. 2011; Göktürkler and Balkaya 2012; Essa 2019, 2020) and induced polarization (Vinciguerra et al. 2019); h. Rayleigh wave dispersion curve (Song et al. 2012) and full waveform inversion (Aleardi 2019). please guide me how to arrange them for you to analyse result and calculate impact effect of papers and perform our meta analysis method? I am looking forward to hearing from you as soon as possible. Best regards Reza Toushmalani
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In light of Zhenzhen Pal et al.'s (2023) “Diagnostic Efficacy of Serological Antibody Detection Tests for Hepatitis Delta Virus: A Systematic Review and Meta-Analysis”, I was curious at how serological tests for Hepatitis Delta Virus affect the way we currently manage HDV co-infection with Hepatitis B Virus.
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Good day, Ms. Villacisneros! To answer your question, serological tests for HDV do really help in diagnosing HDV co-infection with Hepatitis B. They help when molecular tests for viral RNA in relation to HDV is not available in some laboratories.
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It is stated in the study titled "Diagnostic Efficacy of Serological Antibody Detection Tests for Hepatitis Delta Virus: A Systematic Review and Meta-Analysis" by Zhenzhen Pan et al. (2023) that hepatitis delta virus (HDV) is a blood-borne pathogen that relies on the envelope protein of hepatitis b virus (HBV) for the assembly and release of infectious virus particles. I am curious on why HDV is dependent on HBV and what are its key viral and host factors.
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Good day Ms.Sulit!
HBV surface proteins are necessary for the hepatitis D virus (HDV) to produce mature virion particles, which is why HDV is categorized as a satellite virus. As a result, HDV may either co-infect or superinfect with HBV, but it is unable to disseminate or package infectious virions when HBV is not present. Preliminary research using cell cultures and mouse models has shown that encapsulated viruses other than HBV may produce infectious delta virus particles, but as of yet, there is no concrete proof of the therapeutic relevance of these findings. Though they usually recover from both viruses, coinfected patients may experience acute hepatitis. The risk of developing chronic HDV infection and its associated comorbidities increases when an HBV carrier with a chronic infection is superinfected with HDV.
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Help me please, I'm just learning to do meta-analysis using the R program. When I use summary measure with mean differences (MD) mode "metacont(Ne, Me, Se, Nc, Mc, Sc, data = data1, studlab = paste(Author), sm = "MD", common = T, random = T, hakn = T, prediction = T, subgroup = Sbg)" everything works normally.
However, when I change the summary measure to standardized mean differences (SMD) mode "metacont(Ne, Me, Se, Nc, Mc, Sc, data = data1, studlab = paste(Author), sm = "SMD", common = T , random = T, hakn = T, prediction = T, subgroup = Sbg)" an error message appears as follows "Error in (function (yi, vi, sei, weights, ai, bi, ci, di, n1i, n2i, x1i , : Fisher scoring algorithm did not converge. See 'help(rma)' for possible remedies."
Thank you
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Hello Gustavo Waclawovsky I solved the problem by changing method.tau to "DL" which refers to the DerSimonian-Laird estimator.
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According to the study of Pan et al. (2023) entitled "Diagnostic Efficacy of Serological Antibody Detection Tests for Hepatitis Delta Virus: A Systematic Review and Meta-Analysis," what are the inclusion and exclusion criteria for selecting studies in the meta-analysis?
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The inclusion criteria for selecting studies in the meta-analysis focused on the availability of detailed measurements such as sensitivity, specificity, likelihood ratios, and areas under the summary receiver operating characteristic (SROC) curve for serological tests detecting HDV antibodies. Additionally, studies were required to have performed PCR tests for HDV nucleic acids and HDV antibody tests, with reported numbers of true positives (TP), false positives (FP), true negatives (TN), and false negatives (FN). Studies with a sample size of at least 10 cases and published in English between 1989 and 2023 were included. Conversely, studies with fewer than 10 cases, case reports, review articles, or meta-analyses, as well as repeated studies or those lacking a clear gold standard for HDV diagnosis, were excluded from consideration. These criteria aimed to ensure the inclusion of relevant and methodologically robust studies in the meta-analysis.
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Dear all,
I am a student currently engaged in a meta-analysis aimed at exploring the relationship between two variables, A and B. In my review of the literature, I have come across studies that have conducted separate correlation analyses between subscales of A (e.g., A1 and A2) and B, while other studies have compared A and B as a whole.
I am interested in including both types of studies in my analysis. However, I am uncertain about the feasibility and appropriateness of converting the correlations from the studies that analyzed the subscales separately into an overall correlation for comparison with the studies that analyzed A and B as a whole.
Is it reasonable to transform these separate subscale correlations into an overall correlation for A and B for meta-analysis purposes? If yes, then how to achieve that goal?
I would be deeply grateful for any advice or recommendations on a method or approach that could achieve my idea. Any guidance or references to relevant literature would be immensely appreciated.
Warmest regards
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Hi,
yes that is possible as long as to inform the model about the nestedness of the data. The key analysis would be a three-level random effects meta-analysis (see my profile for a bunch of applications.
All the best,
Holger
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In relation to the Systematic Review and Meta-Analysis of Zhenzhen Pan et Al. (2023) in regards to Diagnostic Efficacy of Serological Antibody Detection Tests for Hepatitis Delta Virus.
The detection of viral RNA is widely used as the reference standard for the detection of HDV because of its high specificity and sensitivity making it the gold standard. However, what are the possible limitations that can be experienced?
Reference: Pan, Z., Chen, S., Xu, L., Gao, Y., Cao, Y., Fan, Z., Tian, Y., Zhang, X., Duan, Z., & Ren, F. (2023). Diagnostic efficacy of serological antibody detection tests for hepatitis Delta virus: A systematic review and meta-analysis. Viruses, 15(12), 2345. https://doi.org/10.3390/v15122345
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Hello, Ms. Cabrera!
Based on the provided material, HDV RNA method of detection have several restrictions. Such that, PCR testing is only capable of detecting HDV RNA when it is being actively replicated. This poses a problem especially during therapy when replication of viral genome is suppressed. The increased proportion and complementarity of the guanine-cytosine content of HDV RNA has also been determined to have caused challenges in amplification. Furthermore, there had actually been no standard PCR detection technique until recently due to the vast genetic variability of HDV RNA. Hence, results from different laboratories are not comparable.
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I have a case control study that I would like to publish but there has already been a meta analysis of observational studies in the same topic but on a different population (Iranians) and during a different time period (2000 to 2016). Mine is in the USA and will analyze data from 2016 onwards. Will my study be novel enough for a shot at a good journal?
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Yes. But it's important to highlight the differences in population, time period, and potentially methodology in your submission to emphasize the novelty and relevance of your findings.
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Hi guys. I'm working in a systematic review and meta-analysis. How can I combine 4 groups to calculate the mean and standard deviation of a total cohort of patients?
I need to calculate the mean volume and SD of intracerebral hemorrhage and I have 4 studies.
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You can use a software recommend for meta-analysis. Ex:- RevMan. Follow several guides and learn the steps
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Meta-analysis on life expectancy in people with vs. without disabilities lacks crucial data (SD, SE, CI). So; what analysis methods whould you adice me to rectify this problem?
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Better to go ahead with a systematic review only instead of a meta-analysis. Highlight the potential areas for future research stating that heterogeneity in study reporting has limited the conduction of a meta-analysis.
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Hi
I am conducting a meta analysis and want to include a forest plot. I am using RevMan 5.3 from Cochrane. I only see the option to choose a continuous data type, with a mean, SD and n. But I have included studies with a pre-post study design. How can I make a forest plot with this study design?
Kind Regards,
Bram Schalkwijk
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You can input one-arm comparisons into RevMan. Simply use the pre-intervention mean and SD for the 'control group' and the post-intervention mean and SD for the 'experimental group'.
If you are including one-arm comparison studies and two-arm comparison studies in the same review, you may wish to do seperate meta-analyses for them, or include them all in one meta-analysis, then afterwards do a sub-group analysis spliting the studies.
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What are the commands and software used for dose-response meta-analysis in STATA 17.0? Also, what considerations are there for data extraction in dose-response meta-analysis?
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To conduct a dose-response meta-analysis in STATA 17.0, you can use the "mvmeta" command. Here's a step-by-step guide on how to perform a dose-response meta-analysis in STATA:
  1. Data Preparation: Make sure your data is appropriately formatted with the exposure levels, outcome data, and other relevant covariates.
  2. Install Required Package: If you haven't installed the "mvmeta" package, you need to do so first. You can install it using the following command: ssc install mvmeta
  3. Use the "mvmeta" command to perform the analysis. Below is the general syntax: mvmeta effect_var [varlist]
  • effect_var is the effect estimate variable (e.g., log odds ratio, hazard ratio, risk ratio).
  • [varlist] is a list of variables containing the dose or exposure levels.
Also you can simply perform meta-regression and Bubble plots which are included in the STATA itself. You need to extract the does of the intervention or exposure for each study and then perform a meta regression and bubble plot which will show you the association of dose and assessed outcome perform in your study.
To learn Meta regression and bubble plot you can find useful videos simply giving step by step meta regression in STATA.
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I am preparing to conduct a systematic review and meta-analysis on the prevalence of vitamin B12 deficiency and its associated factors among adult individuals with diabetes in sub-Saharan Africa. If you have expertise in this topic area and are interested in contributing to and co-authoring this systematic review, please contact me.
Contributing roles may include:
  • Identifying and screening studies for inclusion
  • Extracting data from included studies
  • Assessing risk of bias in included studies
  • Performing statistical analyses and meta-analyses
  • Assisting with drafting and revising the manuscrip
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Hi Mohamed Jayte do we have more colleagues to work on this systematic review? Should we create a group to start working on this?
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When I try to do the metatrim on STATA I get the following error:
db metatrim
. metatrim _ES _seES, reffect eform
Note: default data input format (theta, se_theta) assumed.
subcommand meta __000005 is unrecognized
r(199);
Does anyone know how to solve it? I couldn't find anything on the internet.
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Hello Giuseppe Dario Testa. What version of Stata do you have? I ask, because if it is recent enough (v16 or later, IIRC), it will have a suite of new (official) meta-analysis commands, including this one:
PS- I recommend posting questions about how to do X using Stata to Statalist. If you do decide to post there in future, see the very helpful FAQ first.
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With accordance to the systematic review and meta-analysis conducted by Zhenzhen Pan et al., about the Diagnostic Efficacy of Serological Antibody Detection Tests for Hepatitis Delta Virus.
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Findings demonstrate that serological assays are highly accurate in identifying antibodies against HDV, particularly IgM and IgG. Further evidence is need to demonstrate the specific efficacy of serological diagnosis, though. For HDV screening, serological testing is often a good option. For laboratory diagnosis, treatment efficacy analysis, epidemiology, and disease control, the creation of novel serological diagnostic instruments with increased precision and dependability in HDV diagnosis is crucial.
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I have had meta-analysis and
p-value= 0.8720
I2 =0%
used program was Medcalc
is it have meaning?
and is it associated with p-value and I2 value?
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I2 is a measure for quantifying heterogeneity in meta-analyses. It can be interpreted as the ratio of the variance between studies to the total variance in the meta-analysis. I2 is scaled from 0% to 100%, with higher values indicating more heterogeneity. As a rule of thumb: I2 >=50% may represent moderate and I2 >= 75% may represent considerable heterogeneity. Thus, if your calculation is correct, you don't have to worry about inconsistency between the studies in your MA.
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Do you know systematic reviews and/or meta-analyses that have chosen to exclude articles from (or suspected to be) predatory journals/publishers in their work ?
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I think the type of journal should not a priori be an exclusion factor. You can have poor quality studies published in high impact journals (it always depends on the reviewers' that were selected to assess paper during the peer-reviewed process). Quantification of the studies' quality and risk of bias would be more robust than a priori excluding an eligible study just because it was published in a journal that is thought to be predatory.
My 2 cents.
NB: the definition of what is a predatory journal is still a debated issue.
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Dear Colleagues,
We are conducting a qualitative meta-analysis on the topic of individual psychotherapy for trauma and PTSD. The inclusion criteria that we are using for article collection are: (1) English-language articles, (2) published peer-reviewed articles, (3) qualitative, empirical articles, (4) articles focusing on individual psychotherapy, (5) articles focusing on adults, (6) articles where PTSD and trauma therapy are central, (7) articles that include client perspectives and experiences.
We would be happy to receive your recommendations for articles that fit those parameters for inclusion in the meta-analysis. If you would like to contact us with article recommendations, please feel free to message us here via Researchgate or email us at [email protected]. We thank you for your consideration!
Many thanks,
Nicholas Pierorazio and Dr. Heidi Levitt
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Dear Martin,
Thank you so much for your recommendations and suggestions! They are much appreciated. This is wonderful.
Take good care,
Nick
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I noticed a meta-analysis that included a forest plot with a line of no effect equal to 0.62, as indicated in the attached image. Could it be?
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In a forest plot, the "line of no effect" typically represents a null effect or a reference point against which the effect sizes of different studies are compared. This line is often drawn at a value of 0 on the x-axis, indicating no effect or no difference between groups or conditions being compared.
In some cases, depending on the context of the data being presented in the forest plot, the line of no effect may be positioned at a value other than 0 or 1. This could occur when:
  1. Different Baseline Values: If the outcome being measured has a baseline value that is not zero, the line of no effect may be positioned at the baseline value rather than zero. For example, if the baseline value for a particular outcome is 50, the line of no effect might be drawn at 50 instead of 0.
  2. Alternative Reference Point: In certain analyses or comparisons, researchers may choose a different reference point as the line of no effect based on theoretical or practical considerations. For instance, if the effect sizes are ratios or percentages, the line of no effect might be set at 1 instead of 0.
  3. Non-Numerical Variables: In some cases, forest plots may display categorical variables or non-numeric data where the concept of a "line of no effect" may not be applicable in the same way as with continuous numerical data.
Overall, while the default position for the line of no effect in a forest plot is typically at 0 on the x-axis, it can be set to other values depending on the specific context and nature of the data being presented.
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I am conducting a meta-analysis and I want to use the nonlinear polynomial regression and splines functions to model the dose-response relationship between the parameters of interest.
I would appreciate any help or suggestions.
Thank you very much.
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You can use this:
but polynomial regression is very dangerous to use since it doesn't explain anything and it can never be extrapolated.
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I am doing the meta-analysis in which there are some studies which are only in patients who need emergent repair and then there are some studies which provide the data of elective repair type only. Can we pool the data of both emergent and elective repair type together or not?
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Typically you can not pool data from both type of studies as it has different underlying conditions and heterogeneity.
but if you want to consider this option you can approach it considering your research question in different manner like SUBGROUP ANALYSIS, MODERATOR ANALYSIS or SENSISTIVITY ANALYSIS.
By avoiding pooling emergent and elective repair data and considering alternative approaches, you can ensure a more robust and informative meta-analysis.
Always consult with a statistician familiar with meta-analysis techniques for guidance on the most appropriate approach for your specific research question Muhammad Ahmed
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When should the Egger test be applied in meta-analysis? Is it necessary to use it solely when the funnel plot displays asymmetry, or is it also applicable when the plot appears symmetric?
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Cochrane group recommended to adapt only the observation of the funnel plot
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Dear researchers, I am writing to request clarification regarding the minimum number of papers needed for a systematic review and meta-analysis. Could you please offer some guidance on this issue?
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The systematic review on a specific domain can be performed (protocol and search) even if there is no article in the end that are found (meaning that there is no available evidence on the topic under interest).
For meta-analysis, if research studies results can be pooled together for meta-analysis you can theoretically report meta-analysis in n>=2 studies. however, the more studies you get the more analyses you can do.
In many paper in my research area (veterinary science), meta-analysis are conducted when at least 5 papers are available. You can see this paper from Yemisi Takwoingi et al on that topic from a statistical standpoint.
My 2 cents
Takwoingi Y, Guo B, Riley RD, Deeks JJ. Performance of methods for meta-analysis of diagnostic test accuracy with few studies or sparse data. Stat Methods Med Res. 2017 Aug;26(4):1896-1911. doi: 10.1177/0962280215592269. Epub 2015 Jun 26. PMID: 26116616; PMCID: PMC5564999.
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We're starting an ambitious meta-analysis to explore the complex relationship between socio-cognitive and cognitive impairment in multiple sclerosis (MS).
Recently, several studies investigated this association to assess whether social cognition is parallel to (or even dependent on) general cognitive dysfunction. Yet, there have been inconsistent findings, raising the need for a meta-analytic analysis of the literature.
🔍 We're seeking contributions from researchers who have explored these areas of research. If your work addresses both cognitive and socio-cognitive aspects of MS, (particularly Emotion Recognition and Theory of Mind), your findings could be included in this project and contribute to a more comprehensive understanding of the topic.
For more information, see: doi: 10.1136/bmj-2023-000471 / https://pubmed.ncbi.nlm.nih.gov/38268751/
Key Highlights:
  • This meta-analysis aims to clarify whether socio-cognitive deficits in MS arise in association with cognitive dysfunction or as distinct symptoms.
  • We will examine the impact of some key potential moderators to help explain any variability between studies and better identify the potential factors that accentuate or diminish the relationship between cognitive and socio-cognitive symptoms in MS.
  • Your research can contribute to improve our understanding of MS-related symptoms.
📩 For more details or to contribute, please contact me: Béatrice Degraeve ([email protected]).
#MultipleSclerosis #MetaAnalysis #CallForPapers #CognitiveImpairment #SocialCognition #EmotionRecognition #Neurology #Neuropsychology #MSResearch
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While the exact causes of cognitive impairment in MS are unknown, two factors often further impair cognitive performance in patients with the disease: depression and physical disability. Depression often plagues people with MS-related cognitive impairment.
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Hi,i'm working with case control studies for a meta analysis, however, controls are different amongst different studies. However, inclusion and exclusion criteria of cases are the same. What do you suggest please?
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Very nice question. My preferred way to day with it would be trying to categorize the controls under a same umbrella, something in commom, that could make them part of a same category.
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I submitted a manuscript of bibliometric anato a journal and got reviewers' comments. One reviewer indicated that PRISMA and SLR should be applied. I never do PRISMA in bibliometric studies because systematic review is different from bibliometrics, and I am thinking of a proper way to respond to this reviewer. Could any one give me advices? Thanks.
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You could mention that some or most of the points on the checklist do not apply to a bibliometric study, and comply with those that do. It is worth trying to adapt PRISMA to the scenario of your bibliometric analysis. This would highly enhance reproducibility and replicability and would make it possible for other researchers to build on your research. I hope this helps.
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I want to run a meta-analysis for linkage mapping and GWAS QTLs and I will require a software to be able to achieve this.
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Thanks so much, AbdallFatah
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Hi everyone!
I am trying to use STATA to create a funnel plot to asses publication bias using proportions from studies for a large meta-analysis (having used the metaprop command).
I"m having some trouble formatting the funnel plot to give me a meaningful result.
Any help would be much appreciated! Thank you!
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Lucia Sideli : Both need to be transformed
Yousef Shahin : type in the command line: ssc install doiplot
This installs the doiplot module. Then just type doiplot es se, dp. Note es and se are on the transformed scale
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Meta-analyses and systematic reviews seem the shortcut to academic success as they usually have a better chance of getting published in accredited journals, be read more, and bring home a lot of citations. Interestingly enough, apart from being time-consuming, they are very easy; they are actually nothing but carefully followed protocols of online data collection and statistical analysis, if any.
The point is that most of this can be easily done (at least in theory) by a simple computer algorithm. A combination of if/thenstatements would simply allow the software to decide on the statistical parameters to be used, not to mention more advanced approaches that can be available to expert systems.
The only part needing a much more advanced algorithm like a very good artificial intelligence is the part that is supposed to search the articles, read them, accurately understand them, include/exclude them accordingly, and extract data from them. It seems that today’s level of AI is becoming more and more sufficient for this purpose. AI can now easily read papers and understand them quite accurately. So AI programs that can either do the whole meta-analysis themselves, or do the heavy lifting and let the human check and polish/correct the final results are on the rise. All needed would be the topic of the meta-analysis. The rest is done automatically or semi-automatically.
We can even have search engines that actively monitor academic literature, and simply generate the end results (i.e., forest plots, effect sizes, risk of bias assessments, result interpretations, etc.), as if it is some very easily done “search result”. Humans then can get back to doing more difficult research instead of putting time on searching and doing statistical analyses and writing the final meta-analysis paper. At least, such search engines can give a pretty good initial draft for humans to check and polish them.
When we ask a medical question from a search engine, it will not only give us a summary of relevant results (the way the currently available LLM chatbots do) but also will it calculate and produce an initial meta-analysis for us based on the available scientific literature. It will also warn the reader that the results are generated by AI and should not be deeply trusted, but can be used as a rough guess. This is of course needed until the accuracy of generative AI surpasses that of humans.
It just needs some enthusiasts with enough free time and resources on their hands to train some available open-source, open-parameter LLMs to do this specific task. Maybe even big players are currently working on this concept behind the scene to optimize their propriety LLMs for meta-analysis generation.
Any thoughts would be most welcome.
Vahid Rakhshan
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There was a recent well-publicised event where an actual legal court case included legal documents prepared by AI that included supposed legal citations to cases that did not ever exist.
So, you have two problems:
(1) Constructing code that does actually work;
(2) Persuading others that you have code that actually works.
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I am working on meta-analysis, 90% of my data is continuous and expressed in same units, some 10 % studies use different unit of measure.
What should be the appropriate effect size?
Mean difference?
Or SMD,
At the end I need effect size % decrease or increase
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Cohen's d in its original form is SMD (although we usually see it in the sample-based form, also given by Cohen). r^2 or R^2 are usually taken as percents/proportions ("percentage/proportion of the variance explained by the grouping variable"). Then, if you convert d to the scale of r by using the traditional formula by Cohen and, if there are more categories than two, you can use the new formulae given in the previous link. When you have transform Cohen's d to the scale of r, you can take the second power and express SMD in the scale of percentages (of some kind).
The interpretation may be make more complex the fact that, when the scales are not equal, two things affect the result: the number of categories in the variable with the narrower scale and the dicrepancy of the cases in different categories. They both affect the magnitude of the deflation or attenuation in the correlation. This causes that, if the proportions of the cases in different categories radically deviate from each other, the scale of r (and R) is no more -1 to +1, but it may range -0.6 to +0.6 (see simulations and publiced datasets in . Then, the challenge is that what means the "percent" of explaining power or r^2 = 0.4? It means "the proportion of what we CAN predict by the given condition of variables". For this you could try the deflation- or attenuation corrected estimates of r (rDC or rAC; see https://link.springer.com/content/pdf/10.1007/s41237-022-00162-2.pdf and ). They strictly reflect the proportion of the observed correlation of the maximum possible correlation. The relation of these latter correlations with Cohen's d is not studied.
Good luck!
JMe
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Hello,
My Masters research is a systematic review and meta analysis. One thing I am struggling with is when a study has undertaken a split head comparison (intervention on one side of the head, placebo/control on the other side). how is this defined in terms of population?
If there are 10 participants who received placebo and intervention, is n.i = 10 and n.c = 10 or is n.i = 5 and n.c 5? I'm mindful of double counting etc. Any advice welcomed.
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In the scenario you've mentioned, where 10 participants received both a placebo and an intervention, it's important to avoid double counting.
In the context of a split head comparison, each participant serves as their own control, with one side receiving the intervention and the other side receiving the control (placebo). Since the same participant is receiving both the intervention and the control, the total number of participants remains 10.
For the purpose of your analysis, n.i (number of participants receiving the intervention) would be 10 and n.c (number of participants receiving the control) would also be 10. In other words, each participant contributes to both the intervention and control groups, so you should not split the participant numbers.
When conducting your systematic review and meta-analysis, it's important to account for the paired nature of the data due to the split head design. This may involve using statistical techniques that are suitable for paired data, and ensuring that any potential correlations or dependencies between the two sides of the head are appropriately addressed.
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I am doing a meta-analysis and my outcome is child obesty. I have three studies reporting BMI and three studies reporting BMI zcore, has anyone pulled BMI and BMI zscore together in meta-analysis?
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I would also look to see if there are any systematic reviews on the PEDro website which is the physiotherapy evidence database. You can read my paper on number needed to treat, where I mention that site.
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Dear all,
We have submitted a manuscript for publication that presents a systematic review and meta-analysis evaluating the influence of a gene polymorphism on cancer risk. The study involved the selection of published case-control studies from various countries across all continents, comparing the allele frequencies of a specific gene polymorphism in populations with cancer to those of healthy subjects.
The reviewer has requested "External validity is missing, please provide."
However, I am unfamiliar with what constitutes external validity in this context.
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Thank you James Leigh
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I want to perform a systematic review and meta analysis of case series studies. How do I analyse these studies? There are various studies- some have subgroups, but some have only one group with pre intervention and post intervention change reported. Please help.
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I think it is challenging to "pool" results from case-series because of the high risk of bias of this study design. A systematic review would be the first step with an a priori idea of quality indicators of case series.
Then "pooling" should be a priori discussed based on its feasibility and clinical meaning of the different studies you gathered. Pooling poor quality studies together at any price will not give any added value vs a qualitative systematic review.
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I am working on a meta-analysis that examine the dose-response association of fasting plasma glucose (a continuous variable) on incident cardiovascular diseases. Although in most of the original studies HRs or RRs were reported, in some cases ORs were calculated that we should first convert ORs to RRs. Moreover, according to our aim, we want to pooled the adjusted effect sizes, not crude effect sizes. I know we have a formula for converting OR to RR in categorical variables that introduced by Zhang et al. However, for continuous variable I have not yet found any similar formula. Would you please introduce me any tips for my issue.
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A Google search on <meta analysis convert adjusted OR to adjusted RR> turns up some hits that may be helpful.
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Why do we need systematic review of reasons? Are there any differences between systematic review and meta-analysis?
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A systematic review is a broader process that involves systematically collecting, appraising, and summarizing all available evidence, while a meta-analysis is a specific statistical technique used within a systematic review to quantitatively synthesize data from multiple studies to produce a more precise estimate of the treatment effect. Often, these two methodologies are used together to provide a comprehensive overview of the existing literature on a particular topic.
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I am conducting a meta-analysis. The systematic review resulted in 5 eligible studies; of them, one study included a pooled analysis of 14 cohorts that were not published before. Is it possible to consider the pooled analysis as one study and combine it with the remaining studies as usual?
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Yes, unpublished studies can be included.
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I am conducting a systematic review and meta-analysis of many studies with overlapping populations. The Review Manager 5.4 software does not require a sample size to perform a meta-analysis of hazard ratios, so I thought it may be possible to pool data from overlapping populations.
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I am not sure of the meaning of "overlapping" term you mention. From my perspective, it seems that the same patients could be used twice as separate study findings? This type of problem is depicted in Cochrane training book 6.2.4 section (Chapter 6: Choosing effect measures and computing estimates of effect | Cochrane Training).
This situation could be accounted for in the meta-analysis and would have an effect on the standard error of the estimate (with hierarchical model accounting for repeated measurement it would increase the standard error of your pooled estimate). Practical info should be retrieved in (Chapter 10 “Multilevel” Meta-Analysis | Doing Meta-Analysis in R (bookdown.org)) using metafor package in R environment.
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Can a predictor with a higher Hazard Ratio (HR) be considered better compared to a predictor with a lower HR? In other words, can the HR assessment be used as an analog to AUROC for evaluating the effectiveness of a predictor of survival outcomes, for instance, when conducting a meta-analysis? Please, provide references if possible.
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Puthachad Namwaing has given a very comprehensive answer above. An alternative perspective is to consider the following. Imagine we have a HR for two predictors that come from a multivariable model.
i) In the simple model these two predictors are independent of each other they both predict the outcome. The hazard of death in the model is the product of the two factors. One predictor may have a larger effect than the other but they are different sources of variation and both may have an important influence on the outcome.
ii) The size of the HR for each is entirely dependent on the nature / scale of the predictor. Imagine (say) 'weight' as a predictor - the HR associated with a unit change will vary depending on whether weight is measured in g of Kg.
iii) where predictors are categorical a predictor that occurs infrequently (say a rare diagnosis) could have a very large HR associated with it but have very little impact on the overall ability of the model to correctly classify/predict death - for the simple reason that so few people are affected and so omission of this variable does not lead to incorrect prediction for many people.
iv) The accuracy of the estimated effect of each factor will depend on the error associated with it. A 'strong' effect estimated with low precision will be associated with a large prediction error.
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I am a bit confused about this question. I am currently attempting to do a meta-analysis on pesticide exposure and telomere length (outcome). The exposure(s) were basically presented as either a continuous level of pesticide in a biological sample or a dichotomy(exposure/no exposure) using a questionnaire. Both of the estimates were beta coefficients. My question is: can I combine them to do a meta-analysis? If so, how to interpret the results?
Thanks.
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I think you'll have to perform 2 different models (or select what is the more realistic/pertinent approach). The beta obtained from your models tells you different things: for continuous measure of exposure this gives you the impact of each unit increase of exposure and the dependent variable (telomere length).
For pesticide as a dichotomous outcome the beta gives you the effect of presence of exposure (independently of its importance) on telomere length.
It makes no sense to put the different studies in the same model because of these differences (like comparing pear and apple).
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Hi m interested to do some comparative study on urinary stone , pcnl and urs and flexible Urs From Qatar and ur Center If feasible update me
or any meta analysis about endourology Thanks
dr kamran
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For anybody interesting by collaboration in this field:
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Hi every one
I am performing a meta-analysis of a variable's mean (change) (e.g. Blood pressure) for different subgroups. I want to adjust for 2 other quantitative variables (e.g. Age and Weight). I have the mean and SD for all mentioned variables in all studies.
to perform the meta-analysis first I used the metamean() function in R {meta}, then I used metareg() function to model the relationship between Blood Pressure (BP) and Age + Weight (BP ~ Age + Weight).
then I repeated the meta-analysis (meta-mean) using the residuals from the meta-regression model.
this significantly reduced the heterogeneity of my results.
Is what I did technically correct?
can you please guide me regarding the most proper way to adjust my results for these variables?
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Your approach to adjusting for the two quantitative variables (Age and Weight) in your meta-analysis seems reasonable, and it aligns with a common strategy for addressing heterogeneity by using meta-regression. Let's break down your steps and offer some additional considerations:
  1. Meta-Analysis of Mean Changes:Using the metamean() function from the "meta" package to conduct a meta-analysis of mean changes in Blood Pressure across different subgroups is a valid starting point.
  2. Meta-Regression:Employing the metareg() function to model the relationship between Blood Pressure and the covariates Age and Weight is a standard approach for meta-regression. This allows you to investigate whether these covariates explain some of the observed heterogeneity across studies.
  3. Use of Residuals:Utilizing the residuals from the meta-regression model to perform a second meta-analysis is a common practice. By doing so, you are essentially adjusting for the effects of Age and Weight, which might help reduce the observed heterogeneity.
  4. Assessment of Heterogeneity:Your observation that this approach significantly reduced heterogeneity in your results is promising. It suggests that the inclusion of Age and Weight as covariates in the meta-regression model helped explain some of the variability in the study outcomes.
  5. Validity Check:It's a good practice to check the assumptions of meta-regression, including linearity and homoscedasticity of residuals. Additionally, examine diagnostic plots to ensure that the meta-regression model adequately captures the relationship between the covariates and the effect sizes.
  6. Consideration of Nonlinear Relationships:If the relationship between Age/Weight and the effect sizes is not linear, you might explore incorporating nonlinear terms or transformations (e.g., quadratic terms, log transformations) into your meta-regression model.
  7. Sensitivity Analyses:Perform sensitivity analyses to assess the robustness of your findings. You can explore different model specifications, compare results with and without adjustment, and check the impact of outliers.
  8. Interpretation:When interpreting your results, be cautious about making causal claims. While meta-regression can identify associations, establishing causation requires additional evidence and consideration of potential confounding factors.
  9. Consideration of Other Covariates:Depending on the nature of your data and research question, you might want to explore the inclusion of other covariates that could contribute to heterogeneity. Consider variables such as study design, intervention type, or other relevant characteristics.
  10. Consultation with Statisticians or Methodologists:If possible, seek feedback from statisticians or methodologists with expertise in meta-analysis. They can provide valuable insights into the appropriateness of your statistical methods and offer guidance on potential refinements.
In summary, your approach appears technically sound, and adjusting for covariates through meta-regression is a common strategy in meta-analysis. However, always ensure that you have thoroughly checked the assumptions and limitations of your modeling approach and consider seeking expert advice when needed.
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Hi everyone, I am doing Meta-analysis of mediation using the structural equation model in R (the package I will use is “metasem”). May I ask if anybody has experience in doing this type of analysis? I have found a guide to follow but I do not know how to import data with the correct format to do such an analysis.... I would highly appreciate it if you could give me any advice!
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Conducting a meta-analysis of mediation using structural equation modeling (SEM) in R can be a complex but rewarding task. The "metasem" package is a valuable resource for such analyses. Here are some additional thoughts and suggestions to help you with the process:
  1. Data Preparation:Ensure that your data is in the correct format for SEM analysis. Typically, this involves having data on effect sizes, standard errors, and other relevant statistics for each study. Consult the guide you provided to understand the required data format.
  2. Understanding the SEM Model:Before diving into the analysis, make sure you have a clear understanding of the structural equation model you are specifying. Familiarize yourself with the theoretical framework and the paths you are investigating in terms of mediation.
  3. Check for Publication Bias:Consider assessing and addressing publication bias in your meta-analysis. The guide you provided may cover this aspect, but be sure to explore methods like funnel plots or statistical tests for asymmetry to detect potential bias.
  4. Implementation in R:Follow the step-by-step instructions in the guide carefully. Pay close attention to syntax and parameterization in the "metasem" package.
  5. Data Import:The guide may not explicitly cover data import, but typically, you would use functions like read.csv() or read.table() in R to import your data from a CSV or text file. Ensure that your data is correctly formatted with the necessary columns. RCopy code# Example data import my_data <- read.csv("your_data_file.csv")
  6. Data Exploration:Before conducting the meta-analysis, explore your data using summary statistics, visualizations, and correlation matrices to ensure there are no unexpected issues or outliers.
  7. Model Modification:Be prepared to iteratively modify your SEM model based on the fit statistics and modifications indices provided by the "metasem" package. This may involve adding or removing paths, covariances, or latent variables to improve model fit.
  8. Diagnostic Checks:After running the meta-analysis, conduct diagnostic checks on the SEM models. This includes assessing goodness-of-fit statistics, standardized residuals, and other diagnostic measures.
  9. Documentation and Reporting:Clearly document your analysis steps, including model specifications, modifications made, and any sensitivity analyses performed. Transparent reporting is crucial for the reproducibility and reliability of your meta-analysis.
  10. Seeking Help:If you encounter specific issues or have questions about the "metasem" package, consider seeking help from the R community, such as posting questions on forums like Stack Overflow or the R-sig-meta-analysis mailing list.
Remember that conducting a meta-analysis, especially involving complex statistical methods like SEM, can be challenging. Take the time to thoroughly understand each step of the process and seek help when needed. Additionally, make use of the resources provided in the "metasem" package documentation and consider reaching out to the package authors for guidance if necessary.
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Hi,
I am performing a meta analysis comparing 2 outcomes (CCT and ECC). I have pre- and post-operative mean and SD for both CCT and ECC. Each study used various treatment in different follow-up times. We don't have r since we don't have the raw data. I was wondering if there is any way to calculate the SMD for each follow-up time for CCT and ECC to compare.
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See Borenstein book chapter 7 introduction to metaanalysis
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Hello,
I am currently running meta-regression models using 2-3 variables. I have coded my categorical variables and included them with my continuous variables in analysis. Am I correct to assume that running the regression with the variables this way would be the same as creating a subgroup analysis for my categorical variable? Is there any reason to do this subgroup analysis rather than simply run my regression with the variables dummy coded? I am using Comprehensive Meta-Analysis software and only have one variable that is categorical.
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Subgroup analysis investigates whether the results are the same for each group. It is preferable to use continuous data as continuous values. To use categorical data in regression analysis, the fit of the regression is poor unless there are 10 data in the smallest category. If you use multiple variables, check the correlation between them. If the correlation is strong, it is best to select a representative one.
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Dear professors,
Any recommendations of systematic review of structural analysis optimization using genatic algorithms or related.
If any, Please attach me.
Thank you all
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There are many articles and papers that you can search on science direct website specially review papers. By the way Professor, Ali Kaveh has been worked in this field of area so you can read his books and publications.
Studying review papers can help you to obtain to a general vision with enough detail about optimized structural analysis and all kinds of Meta heuristic algorithms are used to this aim.
Good luck.
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Hello academic colleagues.
I need a research collaboration to write systematic review on the said topic. drop a message if someone is interested.
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I'm Interested
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I'm a PhD candidate at the University of Groningen and I'm doing a systematic review using RevMan. I am researching different doses of a medication compared to the control. When I have 2 intervention groups (e.g. medication A 20mg and medication A 40mg) and only 1 control group (placebo), is it correct to separate the different doses into subgroups within the meta-analysis? For example, I want to do a meta-analysis but with subgroups: medication A 20mg x control and medication A40mg control. In this model, at the end of the meta-analysis there is a total of all the studies. However, the total number of patients in the control group is not correct because I have to add twice the total number of the control group. Is this correct? Is there any other alternative?
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Hi Thiago,
If both the 20mg and 40mg effect sizes are measured with respect to the same control group, and thus originate from the same study, I would not perform a subgroup analysis in a standard meta-analysis framework. I'll refer to Chapter 10 of the following book:
"Statistical independence is one of the core assumptions when we pool effect sizes in a meta-analysis. If there is a dependency between effect sizes (i.e. effect sizes are correlated), this can artificially reduce heterogeneity and thus lead to false-positive results."
If the estimates for 20mg and 40mg come from the same study, the estimates are likely correlated, which would lead to a violation of the independence assumption.
If you are still interested in performing a subgroup analysis, you could incorporate it into a multilevel meta-analysis with medication dose (20 mg vs 40mg) as one of the explanatory variables. If you look at equation (10.8) in the book chapter I referred to earlier, you see that a multilevel meta-analysis incorporates a second random-effect: one to account for clustering of effect sizes within the same study. Statistically, this would be the correct way to pool your correlated effect sizes (if you insist to combine them).
Hope this helps!
Kind regards,
Michael
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What is the best software for meta-analysis?
I usually use RevMan for meta-analysis. What is the limitation of RevMan compared to other software (STATA or CMA)?
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One of the widely used and highly regarded software for conducting meta-analysis is Comprehensive Meta-Analysis (CMA). CMA provides a user-friendly interface, extensive statistical tools, and a comprehensive set of features for conducting meta-analyses across various research domains. Other popular options include RevMan (Review Manager) and Metafor in R, depending on user preferences and familiarity with specific programming languages. Ultimately, the "best" software may depend on the specific needs of the user, the nature of the meta-analysis, and individual preferences regarding interface and functionality.
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Dear friends, do we have any specific model to follow for meta analysis in management studies?
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In meta-analysis for management studies, there's no one-size-fits-all model, but there are steps to follow:
1. Define the Question
2. Gather Studies
3. Assess Studies
4. Combine Results
5. Interpret Findings
Example : For instance, imagine studying different leadership styles in businesses. You'd collect various studies, check their quality, combine their findings, and figure out what they collectively reveal about effective leadership in business.
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For calculating summary effect size in meta analysis do i need to group correlation/beta coefficient between 2 variables which are significant or even non significant ones. Eg I have 20 studies and in 15 studies the Beta coefficient between sy PE-BI(variables) is significant but non significant in 5 studies. While uploading data in software should I only include correlation coefficients of 15 studies and then report all stars.
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You need to include all 20. Selecting just 15 significant ones will bias the results. Many years ago the it was common practice to set NS effect sizes as zero in the analysis (which is almost the same as what you propose, but worse) and this is now recognized as a deeply flawed approach.
A major problem in meta-analysis is publication bias, so further excluding NS published effects would bias the results of your analysis (overestimating the effect and possibly underestimating variability). It would result in additional bias over and above the publication bias inherent in the literature.
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1. Do you know of a website or reference that provides a good tutorial about CMA and can introduce me to this?
2. Is there any specific artificial intelligence for conducting meta-analysis, and what software utilizes artificial intelligence in this regard?
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Comprehensive Meta-Analysis (CMA): This software is widely used for meta-analysis and provides a user-friendly interface. While it may not have built-in AI features, researchers can use external tools or scripts for advanced analyses.
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Meta-analysis is a statistical method used to combine and analyze the results of multiple independent studies on a particular topic, to provide a more comprehensive and reliable assessment of the evidence. In the context of treatment approaches for pain management, a meta-analysis can be conducted to synthesize the findings from various studies that have investigated the effectiveness of different interventions for alleviating pain.
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Thank you, Tony. I'll go find these materials.
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What is Preferred Reporting Items for Systematic Reviews and Meta-Analysis (PRISMA)?
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The Preferred Reporting Items for Systematic Reviews and Meta-Analysis (PRISMA) is a set of guidelines for reporting systematic reviews and meta-analyses. It was developed by a group of experts in evidence-based medicine and was first published in 2009. The PRISMA guidelines are designed to help authors report their reviews in a clear, transparent, and reproducible way. This is important so that readers can assess the quality of the review and make informed decisions about the evidence.
PRISMA checklist
The PRISMA checklist consists of 27 items that are divided into four sections:
  • Background: This section outlines the research question and the rationale for the review.
  • Methods: This section describes the methods used to identify, select, and assess studies for inclusion in the review. It also describes the methods used to analyze the data and synthesize the findings.
  • Results: This section presents the findings of the review.
  • Discussion: This section discusses the interpretation of the findings, limitations of the review, and implications for future research or practice.
The PRISMA guidelines have been widely adopted by journals and publishers around the world. They are considered to be the gold standard for reporting systematic reviews and meta-analyses.
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  • How can these methodological considerations impact the reliability of drawn conclusions and their relevance to cancer research and treatment?
  • I am currently exploring the realm of meta-analyses and am in the process of seeking guidelines that can assist me in structuring a more robust study. As a newcomer to this area, I am keen on understanding the best practices and methodological considerations to ensure the effectiveness and validity of my research. Any insights or recommendations in this regard would be greatly appreciated.
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I recommend checking out reviews by Cochrane Haematology or other Cochrane cancer groups (e.g here https://breastcancer.cochrane.org/news/our-most-cited-reviews). It´s always a good idea to involve practitioners and patients, for example, to identify relevant outcomes.
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I have retrieved a study that reports a logistic regression, the OR for the dichotomous outcome is 1.4 for the continuous variable ln(troponin) . This means that the Odds increase 0.4 every 2.7-fold in the troponin variable; but, is there any way of calculating the OR for a 1 unit increase in the Troponin variable?
I want to meta-analyze many logistic regressions, for which i need them to be in the same format (i.e some use the variable ln(troponin) and others (troponin). (no individual patient data is available)
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Just for the sake of completeness: it might be possible if there is a meaningful reference concentration of troponin you could refer to, but I doubt that there is such a value.
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I'm very interested in meta-analysis. If anyone has experience in conducting meta-analyses and is open to collaboration (Forestry Sector), I would love to work together on exploring this research method further. Please feel free to reach out!"
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Tamatha Zemzars Thank you
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I have the OR of a logistic regresion that used the independent variable as continuous. I also have the ORs of 2x2 tables that dichotomized the variable (high if >0.1, low if < 0.1).
Is there anyway i can merge them for a meta-analysis. i.e. can the OR of the regression (OR for 1 unit increase) be converted to OR for High vs Low?
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Hello Santiago Ferriere Steinert. These two ORs are from different studies, right? How many ORs do you have in total? If I had only the two ORs you describe, I think I would just report them separately. If they were two ORs of a much larger number of ORs, and all but that one were from models that treated the X-variable as continuous, I might compare the OR from the 2x2 table to the pooled estimate of the OR from the other studies. But I think more information is needed. HTH.
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In a meta-analysis, there is just one study that reported the incident rate ratio, can I consider it as HR?
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Thank you.
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We are trying to conduct a meta-analysis. One of the studies is providing Nagelkerke's R2 and p-value (and sample sizes for two groups) but not the actual effect size. Is there a way to convert this data to an effect size that we can use in a meta-analysis? Thanks!
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What's your definition of "effect size" ?
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Q 1. Which model should be preferred (FE/RE) when conducting a meta-analysis for pooling prevalence?
Q2. In the RE model, why do all studies receive equal weight irrespective of sample size or confidence intervals?
Q3. When we use the FE model, all the studies receive weight according to their sample size or CI. But my question is, is it correct to use the Fixed Effect Model?
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  • RE model is generally preferred over FE model for pooling prevalence in meta-analysis.
  • In RE model, studies with lower variance are given greater weight.
  • FE model should not be used unless you are confident that the true prevalence of the outcome is the same in all studies.
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I am researching systematic reviews and meta-analyses of radon risk exposure from drinking water. The summary of the random effects models of 222Rn concentration is 25.01, and the 95% confidence intervals (CI) are 7.62 and 82.09) and displayed heterogeneity of (I2 = 100%; P < 0.001) with residual heterogeneity of (I2 = 62 %, p = 0.01). Can anyone interpret the result for me? Why I2 = 100% in this context? what is the significance of the residual heterogeneity?
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  • Mean estimated concentration of radon in drinking water is 25.01 Bq/L.
  • There is high heterogeneity (I2 = 100%), which means the effect sizes vary widely from one study to another.
  • There is residual heterogeneity (I2 = 62%, p = 0.01), which means that there are still some unknown factors contributing to the variability in the effect sizes between the studies.
  • The results suggest that there is a significant association between exposure to radon in drinking water and the risk of cancer.
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I am pooling the effect size of a specific intervention. I am calculating the mean difference and 95% confidence interval scores. I came across an outcome measure expressed in Meters in some of these studies and expressed in Feet in one study.
Is it correct if I convert the mean and the standard deviation to Meters and I calculate the mean difference or should I calculate the standard mean difference as an alternative?
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What you are asking is standard procedure when doing a meta-analysis. When you calculate a Hedges' g (or standardized mean difference), you remove the units (e.g., HA/mm3, g/cc, mmAl, and %) and thus the different studies' values become comparable. Refer to "Introduction to Meta-Analysis" by Borenstein et al., 2021.
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During writing a review, usually published articles are collected from the popular data source like PubMed, google scholar, Scopus etc.
My questions are
1. how we can confirm that all the articles that are published in a certain period (e.g.,2000 to 2020) are collected and considered in the sorting process(excluding and including criteria)?
2. When the articles are not in open access, then how can we minimize the challenges to understand the data for the metanalysis?
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For the first question, using multiple databases as you suggest usually help to minimize the risk of missing relevant studies. The risk of missing studies by published year not usually an issue, since published year tend to be well documented and indexed.
However, missing studies due to a narrowed scope while searching for literature is always potential risk. If you have an reasonable knowledge of the field you are planning to review, you might have a range of publications already prior to the reviewing process. If you can find all of these publications during your scoping process then your scope is acceptable. If some of these are missing, you might need to extend the scope further.
Another issue that is difficult to account for is the inclusion of journals/publications that are not indexed in the big databases.
For the second question, one option is to contact authors of these subscription-only publications and request a copy. If some publications are essential yet no access can be granted, the last option is to purchase the publication.
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Hello friends, how many paper should include in a meta analysis??
How it is different from systematic review??
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Responding to your first query the number of studies to be included depends on the heterogeneity of the study type you choose, there is no clear cut rule of thumb that can be relied on for example, in a study by Davey et al*. a sample of 22453 meta-analyses, show that the number of studies in a meta-analysis is often relatively small, with a median of 3 studies (Q1-Q3: 2–6), and only 1% of meta-analyses containing 28 studies or more. To compensate the heterogeneity of the studies rigorous review of the methods of the studies should be conducted and to reduce errors statistical methods such as DerSimonian and Laird approach and Hartung, Knapp, Sidik and Jonkman can be used for random effects meta analysis.
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Is it possible to conduct a Meta-SEM (meta-analysis of structural equation models) using the SmartPLS 4 software?
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Yes, it is possible to conduct a meta-SEM using Smart PLS4 software. Smart PLS4 is a software package that is specifically designed for partial least squares (PLS) modeling. PLS is a type of structural equation modeling (SEM) that is well-suited for analyzing data with small sample sizes and/or non-normally distributed data.
To conduct a meta-SEM using Smart PLS4, you will need to collect data from multiple studies that have used the same SEM model. You will then need to prepare the data for PLS analysis. This involves converting the data to a format that is compatible with Smart PLS4 and transforming the data to ensure that it meets the assumptions of PLS.
Once the data is prepared, you can then create a meta-SEM model in Smart PLS4. This involves specifying the latent variables in the model and the relationships between them. You can also specify the measurement models for each latent variable.
Once the model is created, you can then estimate the model parameters using the Smart PLS4 algorithm. Smart PLS4 will generate a variety of outputs, including the estimated path coefficients, standard errors, and p-values. You can then interpret the results of the meta-SEM to identify the relationships between the latent variables in the model.
Here are some additional tips for conducting a meta-SEM using Smart PLS4:
  • Use high-quality data. The quality of the data will have a significant impact on the results of the meta-SEM. Therefore, it is important to use data from studies that have been well-designed and conducted.
  • Use a consistent SEM model. All of the studies that you include in the meta-SEM should have used the same SEM model. This will ensure that the results of the meta-SEM are comparable.
  • Use the appropriate PLS algorithm. Smart PLS4 offers a variety of PLS algorithms. You should choose the algorithm that is most appropriate for your data and research questions.
  • Carefully interpret the results. The results of the meta-SEM should be interpreted carefully, taking into account the quality of the data and the limitations of the PLS method.
I hope this information is helpful. Good luck with your meta-SEM study!
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I would very much like you all to answer this question of mine. I found it in a 2009 paper that reported sample sizes in the form of N=7-8, N=4-8, and so on. Meanwhile I can't find its supplementary material and raw data. Can tell me how to deal with this situation in meta-analysis?
Its research data provides the mean, SE.
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Dear Dr. Qinyao Wu ,
Based on the situation you described, the preferred approach for me and my team would be to contact the corresponding author. Generally, they are willing to address the questions you have raised.
If we are unable to establish contact, we may consider excluding this paper, as we are well aware that the sample size can affect the weighting of effect sizes in the meta-analysis.
Best regards,
Tzu-Hsiang Peng
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Hello,
I am currently conducting a systematic review and meta-analysis in the field of epidemiology. However, I am facing challenges in selecting databases for literature collection due to limited access through my university.
The databases that I have personal or university access to include PubMed, EBSCO MEDLINE, Scopus, ScienceDirect, and Google Scholar.
I do not have access to databases such as Embase, Ovid MEDLINE, and Web of Science.
Since I cannot access some of the popular databases typically used for systematic reviews, I am seeking guidance on how to select and create a combination of three databases for my research.
Thank you in advance for your assistance.
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I second what Caroliny Hellen Azevedo da Silva said. You need to either find a collaborator or a librarian who can help you to access these databases. There may also be some plans from these company to provide you a temporary access for a specific cost.
Good luck!
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Forest plot formation for meta-analysis.
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As Lowilius Wiyono said, it is difficult to answer specifically to your question.
I think a good point to start with would be an introduction on the meta-analyses methods to know exactly what you have in mind and then you could chose the dedicated software to do it (R, RevMan, ...).
I really like this online book by Harrer which is a thorough overview of meta-analyses and methods that can be used with R sofware (https://bookdown.org/MathiasHarrer/Doing_Meta_Analysis_in_R/intro.html), but I am a R biased user :-)
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Q 1. Which model should be preferred (FE/RE) when conducting a meta-analysis for pooling prevalence?
Q2. In the RE model, why do all studies receive equal weight irrespective of sample size or confidence intervals?
Q3. When we use the FE model, all the studies receive weight according to their sample size or CI. But my question is, is it correct to use the Fixed Effect Model?
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I would say that by default a random effect meta-analysis would be preferred because it is difficult to say that in your meta-analyses all the observed differences are only due to sampling variability. It is therefore important, I think, to account for the fact that the difference observed is also due to unobserved difference in study design or other characteristics (in fact, with the exception of randomized controlled trial meta-analyses I think random effect would be the default in many situations).
In the random effect, the weight of the studies are not equal. There is always a component which depends on the sample size (within study variance) but you also add a specific term which accounts for between study variance (which is generally called tau-squared).
so the weight depending is on the form:
Weight=1/(Variance_study_i + tau-squared)
You can see that both components are accounted for but now the weight is less influenced by study variance (so larger studies have more impact but much less impact than in fixed effect).
NB: this is a general comment. there may be some specificities for models for a prevalence but this is just to illustrate how it works.
see a specific paper on the 2 types of meta-analyses (Borenstein M, Hedges LV, Higgins JP, Rothstein HR. A basic introduction to fixed-effect and random-effects models for meta-analysis. Res Synth Methods. 2010 Apr;1(2):97-111. doi: 10.1002/jrsm.12. Epub 2010 Nov 21. PMID: 26061376. )
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Hi, I am conducting a meta-analysis on the overall survival and disease-free survival of TACE in Large HCC (dichotomous: 1-3-5 year survival). In inputting data from studies, which do we input as the event for a dichotomous survival meta-analysis like this? The number of deaths or the number of survivors?
thank you
much appreciated
Indah
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Sébastien Buczinski This is very helpful. Thank you very much
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Could someone explain to me why the p-value in the right column of the forest plot is different than the p-value in the test for effect in the subgroup?
I thought that these two p.values should be the same.
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Now coming to your table p-value in the right column of the forest plot is the p-value for the overall test of the treatment effect across all subgroups. It is calculated by combining the results of the individual studies in the meta-analysis. In this case, the p-value is 0.56, which is not statistically significant.
The p-value for the test for effect in the subgroup is the p-value for the test of the null hypothesis that the treatment effect in the subgroup is equal to zero. It is calculated using only the data from the studies in the subgroup. In this case, the p-value for the test for effect in the subgroup is 0.094035, which is statistically significant.
The two p-values are different because of the heterogeneity between the studies in the meta-analysis. The heterogeneity statistic (0.5) is very high, which indicates that there is a lot of variability in the treatment effects across studies. This variability could be due to a number of factors, such as different study designs, different populations of patients, and different treatment regimens.
When there is heterogeneity in the treatment effects across studies, it is more difficult to detect a significant overall treatment effect. This is because the variability in the treatment effects across studies can mask the true effect of the treatment.
In this case, the p-value for the overall test of the treatment effect is not statistically significant, but the p-value for the test for effect in the subgroup is statistically significant. This suggests that the treatment may be effective in the subgroup, but it is not possible to draw a definitive conclusion without further research.
It is important to note that a statistically significant p-value for the test for effect in a subgroup does not necessarily mean that the treatment is clinically effective in that subgroup. It is possible that the difference in the treatment effect is small or that it is not clinically meaningful.
To determine whether the treatment is clinically effective in a subgroup, it is important to consider the magnitude of the difference in the treatment effect and the clinical implications of that difference
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If anyone know to how to calculate the pooled prevalence rate in Meta analysis. In my dataset I have sample population and total population. Using metaprop command the output will come in proportion, how we get the output in percentage?
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You can use STATA metaprop command give power(2) at last, it will come in percent
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I am performing a meta analysis in which there are some studies which are RCTs and cohorts. There are two studies which are non-randomized controlled trials. Can I include those two studies in my systematic review and meta analysis? Is it fine to pool RCTs and non-RCTs?
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If the trials you have provide the required data, you CAN include them in a meta-analysis. Whether or not you SHOULD do so is another matter. In a traditional hierarchy of evidence, non-randomised studies are much lower. They are much more prone to bias - so including them risks including highly biased results - rendering the results of your meta-analysis biased. One approach might be to undertake sensitivity analyses to see whether or not the inclusion of such studies alters the point estimate (much) and overall conclusions - but if it does, where does that leave you and if it doesn't what have you gained by including them?
IF this is a topic where non-randomised studies are, pragmatically, the only approach in many circumstances you might proceed with caution - but you must use a suitable approach to assessing the risk of bias for such studies (ROBINS) - and I would suggest doing the sensitivity analysis in any case. Bit remember the old adage - garbage in, garbage out.
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hello! we are currently working on a systematic review containing 14 studies - however only 8 studies are similar enough to conduct the meta-analysis on and we are planning to do that. Can we still call it a meta-analysis then?
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Yes. It can be called meta-analysis. But it is generally recommended to have at least 10 studies. If possible, increase the number of studies.
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I am looking for your suggestion, options etc.
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Yes, it is possible!
The social-ecological model is a framework that recognizes the complex and dynamic interactions between individuals and their environments that influence health outcomes.
It can be used to identify the factors and interventions at different levels (individual, interpersonal, institutional, community, and policy) that affect health behaviours and outcomes.
A systematic review that uses this model can synthesize the evidence from different types of studies and interventions without aggregating the effect estimates using meta-analysis.
However, conducting a synthesis without meta-analysis can pose some challenges for reporting the methods and results of the review.
There is no clear definition or guidance on how to perform a narrative synthesis, which is often used as an alternative to meta-analysis. This can lead to a lack of transparency and consistency in the reporting of the synthesis process, the presentation of the data, and the interpretation of the findings.
To address this issue, a reporting guideline called Synthesis Without Meta-analysis (SWiM) has been developed to promote clear and transparent reporting for reviews of interventions that use alternative synthesis methods to meta-analysis of effect estimates. The SWiM guideline consists of nine items that cover how studies are grouped, the standardized metric used for the synthesis, the synthesis method, how data are presented, a summary of the synthesis findings, and limitations of the synthesis. The SWiM guideline can help reviewers to report their synthesis methods and results in a comprehensive and rigorous way.
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Dear colleagues
I have recently performed a meta-analysis project however one of the journal reviewers asked me to perform GRADE scoring for the results. Do you know any special software helping me?
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Hi, Ehsan. Do you know GRADEpro?
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I'm conducting a systematic review where I specified that I'll be taking studies from LMICs (Low-Middle income countries). During search, I came across a study which was conducted in high income country but the sample was from low income families, would this study be an eligible study?, please answer considering my LMICs criteria. I know superficially it seems that the study needs to be discarded but please think in terms of heterogeneity that we (explicitly or implicitly) assumed that heterogeneity will be coming from socio-economic status more so if a study already uses it, what is the issue in taking it.
I hope, I'm able to explain my query.
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You can have high income families from LMIC what will you do than? whole data is messed up then. We generalize in this case according to our IN-EX criteria. Mohammad Hashim
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I want to develop an understanding for conducting Meta-Analysis studies in Psychology. how many studies to select, how to screen them, any tools which are used for the purpose. kindly explain with references how to conduct a meta-analysis
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You need to develop a PICOS, then develop a comprehensive search string according to the PICOS, search databases, and screening articles as per the inclusion and exclusion criteria. perform data extraction, analysis, and evidence synthesis. manuscript writing.
It is a long process. I think one should learn before embarking on starting a new project.
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Greetings,
for my systematic review I have 23 research articles 21 of which I got from PubMed, CINAHL, OVID and WOS. I got 2 articles from British library, the explore further option and these articles are cited as peer-reviewed.
can I put British Library as a database in my Prisma Flow diagram. Or do I indicate that two articles were gotten from british library in my methodology? your answers are highly appreciated.
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Go ahead ! Oluchukwu Okoye
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I'm wondering if there is any difference between a meta-analysis in medical sciences and economic sciences. In addition, If you have any guidelines or research about how to conduct a meta-analysis in economic sciences, let me know, please.
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You are welcome Maryam Abedi !
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We were planning about meta analysis and when doing literature review, we came across this condition:
  • Articles were accessing a certain parameter. But there is one article which is using 2 different approach, lets say approach 1 and approach 2 for measuring the single parameter
  • But in other articles, they are measuring the parameter through a single approach which is different than those approach 1 and 2. Thus units of measurement are different as well.
In such condition, from what I have known, we have to use Standardized mean Difference as units are different. But real problem is in that first article with 2 different approach. How to decide which approach out of two, should I use?
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I'm sorry I don't know the answer. Somewhere I have a book by Paul Glasziou on systematic reviews in healthcare, but I'm not just sure where my book is at present. When we had people stay at Xmas, stuff got thrown into garbage bags and put into the spare room, so I'm not sure which garbage bag it is in. Do you want me to look for it?
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In some meta-analysis, the authors manually added some reference, but why were these studies not included in their initial database search.
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I think that this has to deal with "grey" litterature. Some references are missed becaused either their keywords do not fit with the research strategy (lack of sensitivity of the search) or some journals that are not archived in the databases that were assessed. This is why other possibility to look for possible new study to include can be performed using either the method you mention or also asking key researcher on a particular area to look for this type of information.
however, does all these supplementary efforts make a difference ? I think it is question dependent as well as depending on the way traditional bibliographic database assessment is performed.
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Hi everyone, do you know any formulae to calculate the combined SD while knowing the M and SD of each group from the same population in the meta-analysis?
For example, in our meta-analysis, one study reported the Mean and SD for each facets of the Self-compassion scale in participants without reporting the overall score. Our study only wanted to investigate the overall score. We could calculate the Mean score easily by combining the mean score of both groups since they are the same population. However, we could not calculate the SD.
I know that the Cochrane Handbook of Systematic Reviews of Interventions offered formulae for Combining groups but it seems that this formulae can only used for group with different population.
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  • Thank you Hossam Tharwat Ali and James Leigh . I actually tried the Cochrane formulae for a made up sample that I created with similar condition to the study. However, the result that I calculate normally was slightly different than the one I calculated using Cochrane formula. Is this because the formula always provide a slight error?
  • Perhaps the following paper would illustrate my question more clearly. This paper mentioned exactly what I wanted to do at page 380. Specifically, it said that "Where a study provided multiple data for a personality dimension, we used the mean effect size for the meta-analysis." However, I could not find the formulae that the paper use to calculate the mean effect size. Similar papers also reported using a mean or average effect size without provide any formula.https://doi.org/10.1016/j.cpr.2014.05.002
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J is a bias correction factor that used to remove the small-sample-size bias of the standardized differences of means.
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Yes, the metafor package in R can calculate Hedges’ d with or without J. The escalc function in the metafor package allows you to calculate various effect sizes, including Hedges’ d. By default, the function calculates Hedges’ d with small sample size correction (J), but you can also specify the argument small=FALSE to calculate Hedges’ d without the correction.
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Do you know if I am able to conduct a comparison meta-analysis with correlation coefficient and sample size?
And if yes, Would you be able to recommend any software?
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Hello Wim Kaijser. First, yes, feel free to contact me privately. But bear in mind that Karl Wuensch and I worked on that article 10 years ago, and I'm sure I don't remember all of the details. But maybe Karl does. ;-)
Second, Equation 10 in our article is for comparing two independent correlations--e.g., comparing the rXY values for two independent groups of observations. But Williams' (1959) test, shown in Equation 17, is for comparing r12 with r13 in the same sample. These correlations are not independent of each other--they are two non-independent correlations with one variable (X1) in common. So Equation 10 is not appropriate. Furthermore, the SE depends on the value of r23. I confess that I have thus far only glanced quickly at your simulation results, but I did not notice how (or if) the value of r23 was taken into account.
Cheers,
Bruce
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I am working on a meta-analysis where i have extracted the data directly from KM curves via web plot digitizer to calculate HRs for the studies that reported only KM Curves. One of the study has three curves and web plot digitizer would give me a total of three groups. I was wondering if it is appropriate to combine the data for two of those groups and calculate an overall HR for a meta-analysis? Keeping in view that it is a time-event data and there's censoring too. I tried using the method elaborated by Cochrane but it gave me a really wide confidence Interval.
Anyone having any lead of how to deal with this?
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In my experience, estimated data (e.g.: data retrieved from KM) will usually give you a "really wide" confidence interval as you say. Personally, I would have computed all three groups as three individual studies for the meta-analysis (in addition to other studies).
Cheers!
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Can someone suggest me the best method for meta-analysis of proportions where there is a high heterogeneity. I am using random effects model to estimate the pooled proportion. I have done the pooled proportion and subgroup analysis with both logistic regression and dersimonian Laird method. Both yielded a varying result. Which one should I take into consideration?
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Neither is ideal. See this paper:
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I am planning on conducting a systematic review, which will focus on the impact randomised lifestyle interventions (RCTs) on intergenerational health.
Initially, I considered the ROBINS-I tool, which is often used for non-randomised cohort follow-up studies, but the non-randomised element does not align with the randomised nature of RCTs. My next thought was the RoB 2 tool, but it seems more geared towards evaluating the outcome of the trial (e.g. weight loss during trial) rather than the longer-term effects on the cohort.
I have looked online and have not found a specific tool tailored to assessing risk of bias in long-term follow-up cohort studies from RCTs. As it stands, I'm leaning towards the ROBINS-I tool, but any expertise would be appreciated.
Thanks.
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Hi Sam, I would advise you get advice from a statistician. But, my hunch is that if the sub-group is representative of the overall cohort, not "cherry-picked" and their characteristics and experiences/exposures are relevant to the study question, AND analysis and conclusions refer to the 100 and not the 500, it's not missing data per se. Would welcome comments from others having stuck my neck out!
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I am trying to meta-analyze studies that report Overall Survival (OS) with studies that report only the Hazard Ratio for OS. How can I interconvert both variables to a comparable unit to execute the meta-analysis?
Thanks in advance!
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Hello, Desai! Thank you so much for your availability.
I am trying to meta-analyze one outcome. Consider it to be survival in patients exposed to condition X.
2 studies report the Overall Survival for the patients exposed to condition X. 2 other studies report only the Hazard Ratio of the Overall Survival for the patients exposed to the same condition X.
I was looking and it seems I need to convert the HRs into a format that can be integrated with the studies reporting OS directly. Some places report it as the Survival Ratio, which would be SR=e(ln(HR)∗C) (where C is the average time (in years) that patients were followed up).
I still want to know if this is the proper way to do it!
Thank you once again!
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The paper (therapy/intervention study) includes an assessment of quality and risk of bias, however does not using a GRADE approach? Would this be considered a weakness?
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Ideally, it should be included but I haven't seen a journal request specifically that it should be included like QA and registration in PROSPERO.
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I just want to know if someone can provide me an example input data for microbial association network analysis using SPIEC- EASI. Also, if possible, an R script how to do this network analysis will be very helpful. Thank you very much in advance.
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Using SPIEC-EASI for microbiome study, an input dataset in the form of an abundance table or a count matrix is needed. This matrix represents the abundance levels of different microbial taxa across multiple samples. Each row corresponds to a specific microbial taxon, and each column represents a sample.
Here's an example of how the input data format may look like:
```
Taxon Sample1 Sample2 Sample3 Sample4
Taxon1 10 5 0 3
Taxon2 2 8 7 1
Taxon3 0 4 6 2
```
In this example, there are three microbial taxa (Taxon1, Taxon2, and Taxon3) and four samples (Sample1, Sample2, Sample3, and Sample4). The abundance values represent the number of reads or the relative abundance of each taxon in the respective samples.
=========
Certainly! Here's an example R script that demonstrates network analysis using SPIEC-EASI for a microbiome study:
```R
# Install necessary packages
install.packages("SPIEC-EASI")
install.packages("igraph")
# Load libraries
library(SPIEC-EASI)
library(igraph)
# Read the abundance table or count matrix
abundance_table <- read.csv("path/to/abundance_table.csv", header = TRUE, row.names = 1)
# Preprocess the abundance table
# You may need to perform data normalization, filtering, or transformation based on your specific requirements
# Run SPIEC-EASI to infer the network
network <- spiec.easi(abundance_table)
# Get the adjacency matrix from the network
adjacency_matrix <- network$network
# Convert the adjacency matrix to an igraph object
graph <- graph.adjacency(adjacency_matrix, mode = "undirected", weighted = TRUE)
# Visualize the network
plot(graph, edge.width = E(graph)$weight, edge.color = "gray", vertex.size = 10, vertex.label = NA)
# Perform additional network analysis or visualization as needed
# You can calculate network properties, identify clusters, or customize the network visualization
# Save the network as a graphml file
write.graph(graph, file = "path/to/network.graphml", format = "graphml")
```
Make sure to replace `"path/to/abundance_table.csv"` with the actual path to your abundance table or count matrix file. Additionally, you may need to customize the script based on your specific preprocessing steps and network analysis requirements.
Good luck
credit AI tools
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Update 1: I have received the official RevMan installer links via email, which are still up on Cochrane's website.
Update 2: The links referred to above no longer work, as Cochrane have taken down the files, so I have removed them to avoid confusion. Please see Ingrid Arevalo-Rodriguez's answer below for further details.
Do NOT contact me via ResearchGate or otherwise about RevMan install files. Use RevMan web.
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The files should open as normal on any computer. Try another browser, or download on another computer and transfer them over.