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Plants - Science topic

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Questions related to Plants
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Hello, we're working on SOD levels in pine trees and the protocol for SOD extraction doesn't work? Maybe someone has any protocols meant for trees (conifers) or any helpful suggestions?
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Hi Doroteja Vaitiekunaite , could you share this protocol with me? Thank you
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Hello,
do you think that full spectrum LEDs are less useful than red and blue light for growing green, leafy plants (e.g. lettuce, spiderwort, cress etc.)? I have read many articles on this and know the theory. In practice, however, I see many greenhouses, especially in vertical farming, in which full-spectrum LEDs (cool white) are used. So who is right?
Thank you!
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In limited experiments, I have found that mosses photosynthesize using red/blue/green light and full spectrum LED light. It depends on the state of the moss being analyzed. I know that mosses are not commercial crops and I have only worked on small scale, however, there does not seem to be a best light that is the same for everything.
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Yellowish flowers, round green fruit
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It also depends on if you are studying auxin transport/uptake. Some auxin analogs can cross the membrane without reliance on a transport protein. Cost and stability are of course factors too.
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Dear all
need help to identify the plant
thanks
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I think this plant is Piper sylvaticum Roxb. of Piperaceae family.
Thanks!
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Dear All
Please help me to identify the plant/
Thanks in advance 
Rishad
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The above plant is Aporosa wallichii Hook.f. of Phyllanthaceae family.
Thanks!
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I found this lonely flower in almost all the site where I found the red clover. Is it the partner of the red clover or something like that cause i saw it every time? I didn´t find information but I think it is a Taraxacum officinale? If someone has information, let me know.
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Hypochaeris radicata L. is correct.
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In your opinion, can vertical farming become the agriculture of the future in sustainable, green, smart, food self-sufficient cities?
In your opinion, in the context of the ongoing process of global warming, is vertical farming becoming an excellent alternative or complement to traditional agriculture?
With a rapidly growing global population, concerns and questions about the ability to feed the ever-increasing number of people living on planet Earth have been around for many years, but still remain. With a growing population, the scale of civilisation's processing of environmental matter, the scale of industrialisation, the consumption of renewable and increasingly also non-renewable raw materials, the increasing scale of waste generation, environmental pollution, greenhouse gas emissions, etc., the possibilities of feeding the world's population in the future will diminish rather than increase. In addition, the negative effects of the development of civilisation, including above all the accelerating process of global warming, may develop at an even faster rate. Therefore, it is necessary to urgently shift the development of civilisation towards sustainability, to significantly increase the scale of implementation of sustainable development goals, to carry out a green transformation of the economy, including a green transformation of agriculture, and to create new forms of sustainable organic farming, which will be more resistant to negative biotic and abiotic external factors, including, above all, limited resources of agricultural land and the successively increasing negative impact of the progressing process of global warming, including increasingly frequent periods of drought, soil barrenness, plagues of pests and various diseases affecting agricultural crops, etc., which will have a negative impact on the development of civilisation.
Therefore, combining the seemingly contradictory goals of increasing the production of food for people with a reduction in the agricultural areas on which agriculture is practised according to the traditional production formula, stopping deforestation turned into aforestation, increasing the production of crops for human rather than livestock consumption, significantly reducing greenhouse gas emissions, increasing the scale of pro-environmental agriculture, etc., it is precisely the development of vertical farming that can help in this process of green transformation of agriculture.
Vertical farming, also referred to by such terms as vertical farming, vertical farms, consists of growing crops in a vertical formula, in which individual plants are placed one above the other on multi-level platforms. This results in a more efficient use of space, practically multiplying the cultivation area. In addition, vertical cultivation can be established and cultivated anywhere, even in the centre of a large city. Vertical cultivation can be established both in specially designed halls and by adapting existing buildings. Crops such as lettuce, strawberries, herbs and mushrooms, for example, are grown in vertical racks, towers with troughs or purpose-built systems with continuous irrigation and additional artificial lighting.
In view of the above, vertical farming is becoming an excellent alternative to traditional agriculture. The vertical positioning of plants allows a very good use of space, as a result of which significant yields can be obtained from a small area. Vertical farming uses up to 10 times less water compared to traditional agriculture. In addition, vertical farming does not use pesticides and other chemical plant protection products, as the plants are grown in closed, air-conditioned rooms with artificial lighting.
These can even be created in multi-storey buildings in cities or in halls located on the outskirts of cities. This also saves on transport and increases the food self-sufficiency of cities. The problem of droughts occurring more and more frequently in areas of fields cultivated under traditional agriculture does not apply to vertical farming. Therefore, vertical agriculture can be an excellent complement and can also partially replace traditional agriculture in the context of the progressive process of global warming. Therefore, in the context of a progressive global warming process, vertical farming can be an excellent complement to traditionally practised sustainable organic farming. In addition, vertical farming, due to the absence of pesticides and other chemical plant protection products, can also be carried out according to the basic principles that apply to organic farming.
In view of the above, I address the following question to the esteemed community of scientists and researchers:
In your opinion, can vertical farming become the agriculture of the future in sustainable, green, smart, food self-sufficient cities?
In your opinion, in the context of the ongoing process of global warming, is vertical farming becoming an excellent alternative or complement to traditional agriculture?
Is vertical farming becoming an excellent alternative or complement to traditional agriculture?
And what is your opinion on this?
What is your opinion on this subject?
Please respond,
I invite you all to discuss,
Thank you very much,
Hoping to hear your opinions, to know your personal opinion, to have an honest approach to discussing scientific issues and not ChatGPT-generated ready-made answers, I deliberately used the phrase "in your opinion" in the question.
The above text is entirely my own work written by me on the basis of my research.
I have not used other sources or automatic text generation systems such as ChatGPT in writing this text.
Copyright by Dariusz Prokopowicz
Best wishes,
Dariusz Prokopowicz
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In my opinion, vericulture can be an excellent alternative or complement to traditional agriculture if it is carried out in sustainable urban areas that strive to be self-sufficient in many respects, including food, and try to function as much as possible in accordance with sustainable development goals.
What do you think about this topic?
Please answer,
I invite everyone to join the discussion,
Thank you very much,
Best regards,
Dariusz Prokopowicz
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this plat was found in palm orchards with aromatic odeur
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It is Ambrosia maritima L. of Asteraceae family.
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Leaves of several plant species lost chlorophyll after infestation by Spanish slugs (Arion vulgaris). Is it specific slug toxin or some specific virus vectored by the slug?
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Prinka Goyal Thank you, in my case there are two possible variants: 1) some toxin of these slugs, well-known for their poisonous features (actually they prefer to feed on poisonous plants too). Plant chloroplasts are known targets for natural toxins (Alternaria, etc.); 2) some pathogens (probably viruses, slugs are well-known vectors of viruses). But, I cannot find any references for such effect.
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Dear researchgate members,
I recently made two attempts to grow the aquarium plant Cryptocoryne wendtii emersed, i.e., outside of water. Unfortunately, both attempts failed, and I am unsure of what went wrong.
In the first attempt, I heated soil in the oven and shaped it into a cube. I then placed the aquarium plant into this cube. In the second attempt, I used rock wool instead. In both cases, I lightly moistened the soil and rock wool with aquarium water. Subsequently, I placed them in plastic bags and provided CO2 by exhaling into the bags through a straw. The bags were sealed with rubber bands and positioned under an LED strip light. The distance between the light and the plants was approximately 10 cm, ensuring that the light intensity was not harmful.
After one week, I exchanged the air inside the bags and provided more CO2 by breathing into them again. Unfortunately, after two weeks, I couldn't observe any positive results. Almost all the plants in both the soil and rock wool died. There was no growth observed, neither in the plants themselves nor in the roots.
I am very confused and frustrated, as I don't understand where the mistake lies. Do you have any ideas or advice on what I might have done wrong? Are there specific conditions that I should consider to achieve successful emersed cultivation of Cryptocoryne wendtii?
I would greatly appreciate your help and support! Thank you!
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Andreas K. I think the issue might be with the plant nutrition as the rock wool is a blank medium for the nutrients, and for the soil, the source might be an important factor to consider. In our lab, we plant the normal plants in the autoclaved compost and sometimes provide nutrition by NPK spray. Please check the roots of the plants for any fungus as it could also be an important factor. In that case, you should try using a broad-range fungicide. Please share your results; it would be very interesting.
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I am curious about the technology behind plant identifier apps. How are they coded? Is there already an app that can differentiate all the species in one frame? For example, it can id each species in a bouquet of flowers?
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Plant identifier apps typically use a combination of computer vision and machine learning techniques to identify plant species. The coding involves creating a database of plant images with associated labels, training a deep learning model using this data to recognize different plant features and patterns, and then implementing algorithms to process input images and compare them with the trained model to make predictions about the species. While there are advanced plant identifier apps available that can identify a wide range of species from a single image, accurately differentiating multiple species within a bouquet of flowers in a single frame may still be challenging due to overlapping plant parts and variations in lighting and angles. However, ongoing advancements in computer vision and machine learning continue to improve the capabilities of these apps.
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Hello everyone,
I am sorry in advance for my english, it is not my mother tongue.
I am a student who's currently working on a protoplast regeneration project. Unfortunately there's a problem with the medium I'm using.
I am trying to develop a protocol for protoplast regeneration from a plant (can't say which one). I've started since 4 weeks and last week was the first time of trying a new medium.
I used the next supplements:
- MS medium with Modified vitamins (100%-50%)
- 1% Sucrose
- 9% Mannitol
And after autoclaving this I added:
- 10mg/L Zeatin
- 10mg/L 2,4D- or 50mg/L NAA
I used different concentrations of MS medium with modified vitamins.
I had 9 different media:
MS 100% with standard sugar (as stated above) (with zeatin & NAA) (did not crystalize, but had crystals in medium)
MS 75% with standard sugar (as stated above) (with zeatin & NAA) (crystalized)
MS 50% with standard sugar (as stated above) (with zeatin & NAA) (crystalized)
MS 100% with standard sugar (as stated above) (with zeatin & 2,4D-) (did not crystalize, but had crystals in medium)
MS 75% with standard sugar (as stated above) (with zeatin & 2,4D-) (crystalized)
MS 50% with standard sugar (as stated above) (with zeatin & 2,4D-) (crystalized)
MS 100% with standard sugar (as stated above) (with zeatin & 2,4D- and active charcoal (0,02%)) (did not crystalize, also no crystals in medium)
MS 75% with standard sugar (as stated above) (with zeatin & 2,4D- and active charcoal (0,02%)) (did not crystalize, also no crystals in medium)
MS 50% with standard sugar (as stated above) (with zeatin & 2,4D- and active charcoal (0,02%)) (did not crystalize, also no crystals in medium)
I used 300 ul protoplast suspension with 2,5ml medium.
I will try to use 5 ml next time but I don't know where the crystalisation is coming from. Does anyone have an idea?
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Hey Eva are these images taken after isolation or after you plated them? The crystallization is due to mannitol and also sucrose. But you are adding 9% mannitol and also sucrose so it may lead to more crystallization. But mannitol can be reduced to 8%. Anyways I have also started this work 4 weeks before all the best .
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If I have a certain compound and I want to see, how is it metabolised in a plant, what are my options?
Are there other options besides radiolabelled compounds? Are there commercial options to purchase radiolabelled compounds? Would you know about somebody, who would be willing to prepare radiolabelled compounds?
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Hello Tomáš,
You may buy it online. You may make an inquiry at Alfa Chemistry, they offer kinds of good-quality chemicals.
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This is one of our works based on analysing the viability of ammonia recovery and removal from manures extracted from dairy farm. These kinds of approaches could be sustainable solutions for mitigating air pollution as well as could be utilised into sustainable energy productions.
What are some of the alternative measures could be used to recover ammonia from the animal manures those are practiced around world in domestic and industrial phases?
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Ammonia (NH₃) is generated because of nitrogen in the feces and urine of pigs and cattle and the uric acid of poultry manure. Ammonia forms from the biological and chemical breakdown of manure protein, uric acid, and urea during manure storage and decomposition. Ammonia Recovery is an award-winning, low-cost, environmentally responsible method of recovering nitrogen, in the form of ammonia, from various dilute waste streams and converting it into concentrated ammonium sulfate. The most effective method for reducing ammonia emissions from manure application sites is to incorporate that manure into soil as quickly as possible. This drastically reduces volatilization losses resulting from exposure to air. Treating common ammonia odors in the home landscape may be done by the addition of carbon or simply applying liberal amounts of water to leach the soil and a lime treatment to increase the soil pH. Excessive ammonia discharged to receiving waters can cause serious ecological problems, such as eutrophication resulting in the depletion of dissolved oxygen, and excessive algal growth. Substantial concentrations of ammonia in wastewater can also cause toxicity to fish and wildlife.
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Can anyone identifiy this plant? It's a Tilia europaea L.?
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It seems to me that this observation was made somewhere near the place where the herbarium specimen was collected: https://www.inaturalist.org/observations/131203905
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In Bangladesh, we want to use liquid form of cow-dung as a fertilizer, which is found from bio-gas plant as a byproduct. But by testing, we find that it has excess of chromium which is very harmful to human health. So we need to remove it. So, how can we do this?
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Interesting Question?
Animal wastes are much better adsorbents in comparison with activated carbon adsorbents with respect to being cost-effective and their zero regeneration process factors. The efficiency of utilized cow-dung based adsorbents for the sequestration of a wide spectrum of pollutants from aqueous media. Cow dung ash is used to remove the chromium. The collected chromium contaminated waste water from the industry will have only a particular Cr+ concentration and pH value, an aqueous solution has been prepared with unique concentration and with different pH values and activated ash is added separately to the aqueous solution with different dosages and varying contact periods. Then it has been noted that the Cow dung ash has effectively removed the chromium content. However, it can be deduced that cow dung-based adsorbent has exhibited good potential as an adsorbent for the mitigation of pollutants from water.
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When I feed a particular substance to pea plant, I see conversion to unknown compound.
I don't know, what is the product, I don't know (obviously), what is the reaction and I do not know required conditions (like cofactor(s) etc.).
How would you proceed to identify the responsible enzyme/gene?
I intend to identify the product, as that is the easiest thing to do right now, I guess. But I'm afraid that won't help me much, as I won't be able to specify the conditions.
Because any in vitro measurement/detection is ruled out because of the lack of knowledge about the reaction conditions, it seems to me like the only option is to go in planta. What I could come up with is either random mutagenesis or finding two genotypes with different activities and then trying to cross them.
However, for that I would need to have either reliable sensor to monitor amount of my compound in planta, or feed it to the plant and then isolate and measure on HPLC/MS (not very high-throughput).
I was also thinking about utilizing cDNA library, but so far, I did not come up with simple way to do so.
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It would be a whole project, but you could try to fractionate a plant extract containing the activity, using the formation of the unknown substance from the substrate as the assay. Since you don't know what cofactors are involved, you could provide a protein-free extract of the plant (passed through an ultrafiltration membrane) as the source of any unknown low-molecular-weight cofactors. Protein fractions from various purification steps would be tested, and the best ones subjected to additional fractionation, until you had an enriched fraction that could be sent for protein identification by a mass spec lab to narrow down the list of possible enzymes.
Of course, this "grind-and-find" approach might fail if you can't supply the necessary conditions, such as an anerobic environment, or if a necessary enzyme is membrane-bound, or if there are multiple enzymes required for the conversion.
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Hi, I have problem to sterilize freshwater plants (Anubias, Bucephalandra). I used chlorine salts and ethanol. I got contaminations. I think AgNO3 could works. Do you have any other protocols for sterilization?
Thanks for all responses.
Bohuš
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As you are trying to sterilise(surface) plants growing in water, maybe try in a smaller "pond" to grow them in water added chlorine
Solution for sterilisation. And also try to have shoots growing above the water level.
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Hi,
I am working on real-time monitoring of plant moisture content and adjusting (optimizing) the irrigation in hydroponic farms with the help of spectroscopy in order to avoid water stress.
For the reference moisture content of plant/leaf, is there any standard method that I could follow? If yes, what is the number or name of the method?
I looked into the literature and I ended up with two methods that were mostly used by the other but I couldn't find the motivation for choosing one over the other.
1) Collecting leaves, and oven drying for several hours (different papers suggested different hours but mostly 48-72h), at 105-degree celsius (while some papers used lower temperature)
Mc = ((Wc - Wd)/Wc )*100
where Mc indicates the percentage of moisture, while Wc and Wd represent the initial weight and the final constant weight of leaves, respectively.
2) Collecting leaves, and hydrating them to get turgid weight. Oven dry at 80-degree C for 24h
RWC (%) = [(W-DW) / (TW-DW)] x 100,
Where W is fresh weight, TW is turgid weight and DW is the dry weight.
Thank you in advance for your help.
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Moisture meter tests: This uses a specialized device called a moisture meter to determine the (%MC ) percentage moisture content of the material.
The pin meters use electrical resistance to measure the presence of water.
The less resistance there is to the electrical current, the more moisture there is in the plant matter.
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Good day,
i have a general question about tissue culture.
I have found the following recipe for Epipremnum Aureum "Marble Queen":
Leaf Explant: MS Medium + 4.54 µM TDZ + 1.07 µM NAA (Thidiazuron in Micropropagation of Aroid Plants by Chen and Wei (2018), p. 105, DOI: 10.1007/978-981-10-8004-3_4)
Specifically, I have the following questions.
1) Do i only need to autoclave the agar with distilled water (I use a pressure cooker for this) and when the agar has cooled down a bit just add the MS, TDZ and NAA and mix it or do i need to autoclave the MS as well?
2) Will the TDZ dissolve in the agar water at all and how hot can the agar water be to add the MS, TDZ and NAA?
3) Is it even necessary to autoclave the water incl. agar (in the pressure cooker) if I clean all the jars with NaClO (sodium hypochlorite)?
Thank you in advance!
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In general, all things associated with tissue culture need to be properly sterilized. For me, I autoclave the complete media (MS, hormones(I use 2.4-D, NAA, BAP, Kinetin), and agar) along with the culture vessel (petri dish or test tube). But it is better to filter sterilize (.2 micron) the hormones and vitamins (of the media) and add them to MS media (agar mixed) when the temperature drops to about 50 degrees celcius.
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It is not the role being played by this service area of the service and valorization of the future agronomic engineer. It is worth taking a look.
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From the perspective of Plant Population Ecology, what are the causes of drug-resistant plants and how to effectively manage drug-resistant plant species.
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If you meant the herbicide-resistant weeds, there is plenty of literature, just google the question
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We can measure exchangeable K, Ca using flame photometer. Is it possible to analyse these ion using spectral analysis
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You can measure the exchangeable cations using Ammonium Molebdate solution under spectroscopy.
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Latest CEPCI index I could get is 2015, anyone knows how and where to acqueri the information on 2016 CEPCI value?
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What is the cost index of 2022?
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I would say most invasive alien plants are synanthropic species in that they were introduced intentionally for horticulture or other cultivation purposes, or they were unintentionally introduced but are 'weeds' that thrive in disturbed areas and associated with cultivation at some point. I'm struggling to think of good examples of non-synanthropic invasive plants, but I can think of animal examples.
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Many of here offered examples are wrong. Synantropic means introduced, acclimatized and naturalized for alochtonous species, and widespread on secondary habitats for autochtonous species.
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Among the cultivated primroses, I observed a plant with 5 stigmas and styles. I could not find a report on this. Does anyone know the reason for this feature? Is there a report on this?
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It seems normal and okay to me :)
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I am not ruling out that answers are already in some published papers.
Could you please give more references?
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With the data of each variables, PCA can give good results
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Hello all, I measured XRD in sieved dried surface soil samples but one sample has broad hump around 20 degrees. What do you think about that? Is dried plants shows this kind of pattern? Because after the drying, sample looks like including plenty of dried little particles of plant maybe is that a reason of that pattern?
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This pattern is due to organic constituents in specimen.
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How to compare images from thermal sensors with different sensitivity and thermal accuracy specifications? What is the significant impact of these specifications in interpreting plant images?
Mario
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Thanks for such an exciting topic. In my case, I usually use Matlab to do this.
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Hi, I want to know which method is most accurate in providing estimates of chlorophyll content.
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It's biochemical assay
SPAD values are not that reliable over biochem assay.
SPAD values may vary according to time of observation. For example if you take observation at 9am and 11am, based upon the solar radiation it may vary.
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Taxonomy (a branch of biology), for example, is a basic science discipline that primarily deals with the identification, classification, and nomenclature of plants. It also contributes to biodiversity and conservation. However, it has been largely overlooked in recent times due to the fact that it has been unable to grow broader impacts or, maybe, due to other emerging applied fields. This question is being posed to discuss the broader impacts of basic sciences in general, and taxonomy in particular.
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Basic science are the backbone of all advance research and technology..it will give you a proper insight for the innovative technology.for example if take aquaculture unless and until you are not able to identify the species your future research will be vain.so all basic science should be studied and then future research and enterpinersh I can be developed.
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Hi
I’m looking for free online conferences on plant science / food and nutrition / agriculture / horticulture etc.
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Check OMICS International
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Hi,
I’m a PhD student. I’m looking for a short term scholarship for PhD students.
The aim of it is to prepare a common publication (selenium, zinc, bioactive compounds in plants).
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i am in innovation commercialisation and would like to get funding for the project, not a PHD studentship
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Dear Researchers,
Please share methodologies to quantify the hypothesis that the "reduced evaporation" and "increased transpiration" from tree cover area (forested region) results in increased water conservation.
Thank you!
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Also check please the following useful link: https://pub.epsilon.slu.se/13553/1/bargues_tobella_a_160808.pdf
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we are working on plant remains from a neolithic site and we are wondering if there is a good and helpful Atlas to compare and identify the plant remains, such as seeds, forks, spikelets, etc. our work is just to prepare a primary report to work with a professional Archaeobotanist.
thank you.
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Degsew Mekonnen thanks my friend. I have his books. any other suggestions?
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Suppose we have the data for the number of flowers, fruits, branches, leaves (R1=3; R2=3; R3=4; Mean 3.33).
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Yes, it makes sense, but you need to specify that it is the mean (i.e. the average) and it is useful to give some indication of its accuracy such as the standard deviation or a confidence limit. However, do not give too many decimal places - 2 decimal places might indicate that your measurement has an accuracy of 1 in 100, three decimal place an accuracy of 1 in 1000, and so on. Hence, beware that you are not participating in 'pseudo-accuracy'.
If you feel that an integer number is what you want, there are two other measures of the centre of a distribution that might appeal to you. One is the mode, i.e. the most frequently occurring number. The other is the median, i.e. the central observation when they are ranked from , say, smallest to largest.
As an example, if your counts are 3 3 3 4 3 3 2 4 3 3 4 2, then the sample size is 12. the sum is 37 and the mean (average) is 3.1 (well 37/12 is 3.083333333, but being aware of pseudo-accuracy 3.1 is best). As the data contain 7 '3s', 3 '4s' and 2 '2s', the most frequent observation is 3, which is the mode. The median is the mid-point in the series 2 2 3 3 3 3 - 3 3 3 4 4 4, and hence is also 3. So you can say:
Mean = 3.1 (perhaps also quoting the standard error, etc.)
Mode = 3
Median = 3
Choose whichever you feel is appropriate - they are all statistically accurate statements about your data.
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I need to know the name of this plant. I appreciate the help.
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Pleroma urvilleanum (=Tibouchina urvilleana) is correct identification. https://powo.science.kew.org/taxon/urn:lsid:ipni.org:names:77206410-1
Thanks!
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I expend almost 2 months trying to find the name of this tree, if you know it I will appreciate the help.
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Pittosporum undulatum Vent. is correct identification. This Australian plant species was widely introduced in the late 1800s as an ornamental tree to different parts of the world including South America.
Thanks!
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Hi
Would you please tell me what plant it is?
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I think this plant is Dracocephalum moldavica L.
Thanks!
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Hello,
I work for an organization that tests various products on plants: substrate, natural fertilizer, biostimulant, etc.
With each new project, we ask ourselves which plant are we going to use, what parameter are we going to measure, is it relevant or not for this plant, for these products, etc.
So, I was wondering if there is a guide to research plants and their optimal use?
For example:
-Test: fertilizer for fruit plants.
-Plants: tomatoes and cucumber.
-Measure: number of flowers (p.x how to do it) and weigh the fruits after x days.
Thank you
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guidelines for experimental practice in organic greenhouse horticulture. by Koller et al. 2016
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Hello everyone,
We are planning to study how plant growth promoting bacteria are affecting various plants (eg. wheat, barley, etc.). We would like to coat the seeds with bacteria. We prefer film coating. I can't find any proportions of seed, inoculum, carrier materials and sticking agents.
Could you please share the recipe you are using for your research? We prefer using cellulose or lime as a carrier material.
Thank you in advance.
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Hello to everyone! I am trying to multiplicate a specific variety of Kiwi with tissue culture. I managed to multiplicate some. Some of them came from callus and some were produced directly from the starting material. What I would like to ask is, do the plants that come from callus differ genetically from the mother plant?
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The cytogenetic and genetic stability of the regenerated plants is one of the key prerequisites for efficient clonal propagation. Plants regenerated from relatively undifferentiated callus cultures possess a vast array of genetic changes. Such variations can result in useful agricultural and horticultural products. But sometimes, the variations in traits other than those of interest may be undesirable. Anyhow after regenerating plantlets, you can go for genetic fidelity assessment to understand the level of genetic variation.
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Hi
I'm researching about porphyrin syntheizing pathways protein and genes...
I need to check heme oxydase activity so need to extract biliverdin IXa(BV), the product of heme oxidation, from plants.
I'll procedure HPLC analyzing but only found extract BV from E. coli, salmon and egg shall not a plants leaf tissue.
So, is there anybody solate biliverdin IXα from plants for HPLC analyze?
Thanks for reading.
Always be happy.
감사합니다.
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Is it appropriate to name organisms after people? Names convey messages and reflect attitudes! Is it ethically appropriate to dedicate a plant or animal to a person for whatever reasons? Sandra Knapp, Maria S. Vorontsova, and Nicholas J. Turland refer to this as "symbolic ownership" in "A Comment on Gillman & Wright (2020)" in Taxon https://doi.org/10.1002/tax.12411
BIOPAT e.V., for example, offers to name new species at wish for a donation of at least 2600 Euros (who do these organisms 'belong to'?). One can dedicate a scholarly work, as a book or journal article, to a person – but a living organism? Wouldn't it be preferable to adhere to the common practice of allocating descriptive names and to ban anthropocentric patronymic names and 'graveyard taxonomy' from biological nomenclature via the 'Code'!
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With your proposal you raise three issues:
  1. Switching to “indigenous” names in scientific nomenclature (your reference to Knapp’s paper).
  2. Abandoning the habit of creating scientific names after people.
  3. Abandoning an alleged “antropocentrism” in naming species.
1) As regards the first issue, we should always bear in mind why the Linnean system gained its key role in science: avoiding the Babel of local (= indigenous) names and establishing an universal naming system to vehiculate names within the scientific community. What Linnaeus did in his system was abandoning a plethora of local (=indigenous) names. Linnaeus’ Systema Naturae was mostly dealing with European species and as such he wiped thousands of European “indigenous” names off. In Europe the same species has often a different name not only depending on the country but often depending on the town/village or the valley or the small island (and this is normally true also elsewhere in the world). Nobody in Europe complains that local (=indigenous) names have been “shadowed” by scientific names. People are free to use local/indigenous names in their daily life but when switching to science they know that there is another language to follow, ie., scientific nomenclature. I don’t see any reason why this should not work outside Europe. Are “indigenous” people of Africa, Oceania, etc. different from us?
2) as regards the second issue: I don’t see anything bad about naming species after people. It’s an habit as old as scientific nomenclature and I don’t see any valid reason to abandon it. We still have millions of species to be named and relying exclusively on morphology for chosing their names would greatly limit our imagination and envetually would make remembering names more difficult. I suppose that you are aware that in zoological and botanical literature there is a fluorishing publishing of books on the etymology of zoological and botanical names and having patronymic is often felt much more entertaining than having only boring morphological names. The claim that some recipients of names were bad guys (of course, based on your own values) and that therefore we must “punish” them by eliminating those names is nonsensical. The past is the past and we cannot change history. Furthermore it would be utterly presumptuous to think that our values are the truth and that therefore we are entitled to judge other people and their political, religious or cultural habits and beliefs.
3) As regards your claim that naming species based on our cultural view is “antropocentric”, this is another extremely questionable point. Honestly: do we have any other point of view which is not ours (and therefore antropocentric)? The answer is obviusly not. We are the only intelligent organisms on this planet and we are the only ones who have created a complex language, which requires to have names for every animal and plant. Are animals and plants intelligent enough to appreciate or dislike names? Obviously not.
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I'm doing a research project where we are testing different methods of fluorescent live/dead stains and we need to kill some strawberry and potato roots so we can stain them. The only method we know will work well is boiling them in 70-80 degree water, have any other ideas?
thanks!
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Starting to boil in a waterbath or autoclaving are two options for heat treatment. This is the section of the operation that requires the most improvement. Only 15 minutes of autoclaving (without preceding KOH immersion) is required for greenhouse-grown plant roots that are ~4 weeks old. Adventitious roots that are 1 centimeter in size and ~3 months old must be soaked overnight and autoclaved for 60 minutes. Multiple soakings and more than one hour in the autoclave may be required for some tissues. The time it takes to boil something is usually longer than the time it takes to autoclave it.
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Demographers estimate that by 2050, the number of people on Earth will reach 10 billion. With such a number of people, the agricultural economy, logistics of food supplies and people's eating habits will have to change. It is likely that economics will force these processes, which will result in the transition of the majority of humanity to nutrition mainly based on vegetable and vegetarian diets. Meat production is many times more expensive than the production of cereals, fruits and vegetables. In addition, according to scientific research and the theory of futurologists, the production of traditional meat, e.g. pork and beef, may be replaced by the production of protein from insect breeding. Research shows that there are more proteins in the bodies of insects than in traditional meat dishes. In addition, the logistics of food supplies, agri-food products will have to improve. Systems for matching agricultural and reptile production to the current needs of the industry and the nutritional needs of people will be improved so as to reduce the scale of food wastage. The biggest threat to the implementation of this plan may be unexpected atmospheric phenomena, natural disasters, droughts, hurricanes, tropical heat in the areas in which agricultural crops have been cultivated so far. In addition, industrial exploitation of arable land and climate change causes soil depletion and the disintegration of areas suitable for agricultural production. Therefore, it will be necessary to continue the technological progress in the production of crops, in biotechnology, in the creation of new plant varieties resistant to pests and adverse climatic changes.
Please, answer, comments. I invite you to the discussion.
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With rising income food consumption patterns also change. Calorie intakes of poor and rich people are surprisingly similar, but rich people consume more protein. This adds about a further 1 percent growth to food demand which means that the world will need to produce approximately two percent more food annually if today’s poor become rich. The growth of supply needed for the future about 2 percent annually has to come mainly from available farmland to avoid an overly negative impact on fragile ecosystems. This requires finance, investments, innovation, and knowledge to improve the yields at existing farmlands. The yield gap between what’s needed and what’s being produced is still very high. On the other hand, reducing food waste can have a significant impact on the availability of food. Reducing food waste can improve the efficiency of food value chains and help to distribute food more evenly to those in need.
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Hi everyone,
are there methods for the RNA extraction from mosses spores?
Could a method used for RNA extraction from pollen be suitable for mosses spores?
Thanks
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Dear Piergiorgio,
thank you for sharing this very interesting technical question with the RG community. We work in the area of synthetic inorganic chemistry, so that I'm absolutely no expert in this area. However, I made the experience that it often pays off to directly search the "Publications" section of RG for potentially useful literature references. For example, the following detailed protocol is freely available as public full text on RG:
Isolation of DNA, RNA, and Protein from the Moss Physcomitrella patens Gametophytes
Good luck with your work and best wishes, Frank Edelmann
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This plant grow in wild habitat and flowers in July and August.
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Parthenium hysterophorus
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How do we grow plants in marginal environments without encouraging invasiveness?
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If your talking about cultivated plants ,each interact directly with other species that may include pest ,and weeds and even pathogens . Some interactions can be good and others not so good. If you are Introduction of certain plants to areas that are non-indigenous could have bad side effects ( Pueraria montana Kuduz ) brought into the southeastern United States as early as 1940, was good idea then for erosion control but has become and invasive that is hard to control in many areas. Much study is required with NO Short Cuts in yuor control area. You can be successful , if you take your time and survey your study area first.
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The yield of plants is found to be increased with the conservation of perennial to annual plants what are the processes, advantages, and disadvantages?
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Firstly, it is next to impossible to make perennial plants behave like annual plants.....secondly , if at all you try , it won't be a sustainable exercise. Bonsai you can try....like perennial ornamental plants into annual plants...But , i doubt for fruit crops...
Good question, out of box thinking....
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I am researching UKF, and I would like to know where can I find performance measures of this. The system is a Chemical Process Plant.
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Maybe you can consider the recursive least squares algorithm (RLS). RLS is the recursive application of the well-known least squares (LS) regression algorithm, so that each new data point is taken in account to modify (correct) a previous estimate of the parameters from some linear (or linearized) correlation thought to model the observed system. The method allows for the dynamical application of LS to time series acquired in real-time. As with LS, there may be several correlation equations with the corresponding set of dependent (observed) variables. For the recursive least squares algorithm with forgetting factor (RLS-FF), adquired data is weighted according to its age, with increased weight given to the most recent data.
Years ago, while investigating adaptive control and energetic optimization of aerobic fermenters, I have applied the RLS-FF algorithm to estimate the parameters from the KLa correlation, used to predict the O2 gas-liquid mass-transfer, hence giving increased weight to most recent data. Estimates were improved by imposing sinusoidal disturbance to air flow and agitation speed (manipulated variables). Simulations assessed the effect of numerically generated white Gaussian noise (2-sigma truncated) and of first order delay. This investigation was reported at (MSc Thesis):
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What are the precautionary measure that we can adopt to prevent the sprouting while drying the plant sample for herbarium?
Please suggest
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Microwave (or an oven) will act fine, killing the tissue. But change paper frequently after applying it, especially with succulents.
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So I understand that essential oils are formed by steam distillation, and contain volatile, usually aromatic, compounds.
Extracts are formed by immersion of plant matter in a solvent, and are usually reported to contain compounds such as polyphenols, anthraquinones, flavonoids and the like.
Practically every report I have read does not mention whether obtained extracts contain the volatile compounds found in essential oils though. Will there be volatile essential oil compounds in extracts, or can they ONLY be taken out of plant matter by steam distillation?
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essential oil and volatiles are similar, but not the same! Plants, extracts (except Citrus sp peel oil) by definition DO NOT contain essential oils but volatiles! this is totaly technical description. only distillations are accepted for the production of essential oils.. Also CO2 extracts are NOT essential oils even they may contain volatile compounds!!!!
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I know, the question is a bit simplistic. It is also not only about the plants, but more about the photosynthetic organisms ... However, in this time of global biodiversity crisis, we are constantly confronted with prioritizing. Recently I read somewhere that in the Arctic, the photosynthetic algae should be taken care of and not the polar bears. Also in temperate regions, where the habitats are under enormous pressure, shouldn't we pay the greatest attention to the producers/plants? On the local level (local administration, journalists) I am constantly confronted with the question: who do we save first? With this somewhat provocative question, I simply wanted to know/hear what researchers from various fields will say about it (or against it).
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No, all life is essential.
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Hello, everyone!
I need to evaluate the increase/decrease of seeds' viability with tetrazolium test, if these seeds were previously exposed to nanoparticles. The species of my study is Capsicum annuum. Please, if you would be so kind, send me scientific articles that support your answer. Thanks a lot!
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Tetrazolium test very specifically mentions about the seed viability indications. depending upon the seed selected, your lab environment and tetrazolium test applied, you may like to develop your own protocol for your specific research
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Are pathogenesis-related proteins and antimicrobial peptides encoded by plant resistance genes (R genes)?
I'm unsure if the genes for these proteins/peptides are types of R genes?
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My research includes monitoring canopy temperature over time with a thermal FLIR camera. I am looking for a code/program that will help me analyze the videos easily and automatically. For my analysis, I am looking for a code that can separate plants and background and that distinguish between the different plants. I then need the average temperature from each plant in every frame.
The file we get from the thermal imaging is a 'seq' file.
I attached a RGB picture of a tray in my experiment.
Thank you in advance for your help.
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Thanks to everyone for the answer! You were a great help
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How does MAPK signalling work in plants in response to pathogen infection?
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This topic is well explored and there is a huge literature resource and review articles available. You just need to find and focus on reading and understanding it.
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This is a climbing shrub grown in houses for the fragrant flowers in Salem, South India. I request the expert members for the species id of this Jasminum.
Thank you.
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It looks close to Jasminum azoricum L. of family Oleaceae.
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As the land availability for conventional farming is decreasing, what percentage of worldwide farming is being done through soilless route (including hydroponics, aeroponics, aquaponics)?
Any literature highlighting the same will be helpful please.
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Thank you for sharing this question
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I am attaching the photos of a Rubiaceae member for identification which I have taken from Oddanchatram, Dindigul district of Tamil Nadu, India.
I request the specialists to identify the plant.
Thank you.
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It looks close to Oldenlandia corymbosa L.
Thanks!
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I have some plant samples and I want to check the antiviral activity and Antibacterial Activity. and I want to check it by using bioinformatics.
So I need Suggestions regarding which bioinformatics parameter or software is available that I can use for check by antiviral and Antibacterial activity.
#bioinformatics #antiviral #antibacterial #plants
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Hi
Your request is very general.
You need to have information about the compounds of the plants you want and find the antiviral or antimicrobial effects of those compounds.
For example, plant AMPs. Some of these AMPs are shared among eukaryotes (eg, defensins and cyclotides), others are plant specific (eg, snakins), while some are specific to certain plant families (such as heveins). You can use https://dbaasp.org website to predict the antimicrobial properties of peptides. This site is also a database of AMPs where you can see the antimicrobial properties of the AMP you are looking for.
Or other compounds in plants that have either been approved for antiviral and antimicrobial properties, or you can use docking tools to predict the interaction of these compounds with microbes or viruses(For example, a flavonoid compound with the corona virus s protein).
good luck
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How many new plant species have been discovered in Hoang Lien Son range since 2000?
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We have not known number of plant species in Hoang Lien Son. We should conduct a survey project.
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Dear all taxonomists
Do you think that the problem which we had with Zootaxa in this year is an accidental or we should expect similar problems in the future? Not only for Zootaxa but also with other taxonomic journals. Do you think that we can do something with it? Any strategy or ideas? Do we have this problem only in zoology or also in botany?
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I don't understand this and similar discussions. There are hundreds of quality journals that publish alpha taxonomy articles in many fields. Why all attention is focused on Zootaxa?
I never publush my research in paid journals because this is a cheating business. However, this does not apply to journals of scientific societies, where member contributions are required.
Here is just a brief list of free quality international peer-reviewed journals (referring in Scopus and Web of Science core collection) that publish articles on animal alpha taxonomy (many of them are with open access; also many journals publish alpha-taxonomy on fossil records):
Zoology/Entomology:
1. Zoosystema (Scopus, WoS core collection) - chargeless
2. Acta zoologica academiae scientiarum hungaricae (Scopus, WoS core collection) - chargeless, open access
3. European journal of taxonomy (Scopus, WoS core collection) - chargeless, open access
4. Zoosystematica Rossica (Scopus) - chargeless, open access
5. Zoologicheskii zhurnal (Scopus, WoS core collection) - chargeless, open access
6. Zoology in the Middle East (Scopus, WoS core collection) - chargeless
7. Invertebrate zoology (Scopus) - chargeless, open access
8. Acta Zoologica Bulgarica (Scopus, WoS core collection) - chargeless, open access
9. Ecologica Montenegrina (Scopus) - chargeless
10. Annales zoologici (Scopus, WoS core collection) - chargeless
11. Arthropod sytematics and phylogeny (Scopus, WoS core collection) chargeless, open access
12. Zoologischer anzeiger (Scopus, WoS core collection) - chargeless
13. Turkish Journal of Zoology (Scopus, WoS core collection) - chargeless, open access
14. Arthropoda selecta (Scopus) - chargeless, open access
Entomology:
15. Annales de la Société entomologique de France, N.S. (Scopus, WoS core collection) - chargeless
16. Insect systematic & evolution (Scopus, WoS core collection) - chargeless
17. Far Eastern Entomologist (Scopus) - chargless
18. Entomological Review (Scopus) - chargless
19. Fragmenta entomologica (Scopus) - chargless
20. Caucasian Entomological Bulletin (Scopus) - chargeless, open access
21. Russian Entomological Journal (Scopus) - chargeless, open access
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Do you use image analysis to make measurements in your experiments?
Would a monitoring camera help prevent failed experiments?
Do you need lots of pictures to document experiment progress?
My hope with this discussion is to identify problems that I could solve. I am developing camera hardware and software tools and want to make them as useful as possible to researchers.
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Taking pictures of samples is crucial to my research
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Please help me to identify this fern species. Thank you in advance.
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It is very difficult to identify a plant without reproductive structures.
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In your opinion, what plant breeding plant can be important and useful in the future?
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Have a look at our publication on edible plants, where we recommend a number of promising plant species to improve people's diet and livelihoods:
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I have seen farmers are using Bentazol for broadleaved weed control on soya bean fields. Soya bean byitself is also a broad leaved plant. I want to know more about this.
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I dont any idea, i just follow this question apparently.
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The Capparis scabrida species, Family of the (Capparaceae), is known as dog sapote, it is one of the species with the greatest adaptability to desert ecosystems, it belongs to the flora of the dry forests of Northern Peru, and Central and South from Ecuador, between 0-2,500 m of altitude. It is a species that never loses its leaves, always turn green during its life cycle and it does not have seasonal precipitation, it has to wait for the rain every year. My question is why it forms many rings of growth if it does not present seasonal precipitation and never loses its leaves. That is an image of a cross section so you can see the great presence of growth rings, It was collected in the South Region of Ecuador (Loja-Catamayo,Ecuador 2020).
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Los anillos son los tejidos vasculares del arbol (xilema y floema) atraves los cuales (xilema) sube el agua desde el terreno hacia las hojas, y el floema que desde las hojas distribuye a todos los organos del arbol la glucosa que es el producto de la fotosintesis. Entonces yo diria que si Capparis scabrida nuca pierde sus hojas la fotosintesis continua y por eso se necesita agua que probablemente se almacena en las raices del arbol para subir a las hojas en un flujo continuo. La misma agua contribuye al desarrollo del tronco y a la formaccion de un nuevo anillo de tejido vascular, por cada temporada.
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When a population is small, the effect of genetic drift increases, leading to less allele fixation and/or random fixation. This, in essence, contributes to increased homozygosity, which affects species fitness negatively. Plant production can be affected by less efficient selection, which in small populations causes the accumulation of deleterious mutations. Since indivividuals are more likely to be linked to small groups, they are more likely to be inbred. Due to mutation accumulation, decreased genetic diversity, and increased inbreeding, a reduction in fitness may occur in small plant populations. The evolutionary ability and the capacity of a species to adapt to a changing environment, such as climate change, are diminished over time. Global warming, can lead to population fragmentation especially when coupled with mountains, reducing movement from one habitat to another
In forest areas, fragmantion can be claculated geographically and annual changes can be extracted. the situatin is differint in Scattered distribution of small herbs grow in mountain ecosystem, it is so difficult the calculate the fragmentation trend geographically (it’s not savanna or high covered forest that can calculate the yearly geographical changes), is there any method to calculate the fragmentation changes in population of such small herbs geographically?
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Mountain ecosystems are geographically very unique and the changes in plant populations of such ecosystems are need to be carefully monitored. In the scenario of climate change and global warming, genetic diversity is much essential to adapt the plant populations to the changing conditions.Remote sensing ( aerial photography)is one of the useful method to assess the fragmentation of plant population in mountain ecosystems.
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Fluctuations in population numbers, abundance, or density from one time step to the next are the norm. Population cycles make up a special type of population fluctuation, and the growth curves in population cycles are marked by distinct amplitudes and periods that set them apart from other population fluctuations. In the animal kingdom, it may be explained that this fluctuation is the result of a change in the food chain and the density of consumers' arrangement, which over the years entails increases and decreases in the size of the population. But the situation is different in the plant kingdom: the plant may be lost and disappear for a long time in one region, and then it will return strongly and disappear in another region and so on. Some may explain this by the presence of seeds in the soil, which allow the plant to return from the dark. The reason for its disappearance may be natural as a result of climate change or the destruction of environments and others. Generally, this fluctuation is normal, but when is the matter dangerous, worrying and warranting intervention? How can we expect that the plant will return after its disappearance in a region?
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I strongly agree with you that tracking the population size at close intervals and for a long period of time may give an indication of the condition expected in the future. Acctually I find this is very difficult, especially in endemic species of little geographic range, which have small numbers of mature individuals.
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In the process of preparing scions for grafting, it is seldom a practice to trim the leaves on the scion while still on the mother plant. The implication of this is that after few days, the petiole snaps off easily, after which it can be severed for onward grafting to an understock. What could be physiologically responsible for this phenomenon in plants? Thank you.
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Timothy Adeyemi The whole process is known as pre-conditioning. By doing it, the phenol content decreases in the scion and more food material is stored for the sprouting bud to increase the success rate of grafting.
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Do you think the plant can communicate with each other, what is the level of feeling in plants?
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The study reveals that plants communicate to each other through their roots.
Thanks!
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Psychological processes as: perception, memory, learning, emotion or motivation?
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Indeed, there is enough data that indicates that the roots have a structure that could be assimilated -mutatis mutandi- to what would be a brain ... this is even more explicit in forests or similar where all of them interact for, p. For example, warn of possible dangers in order to ensure that the entire forest can adaptively "defend" itself.
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I am young, and during my undergraduate degree I belonged to a research group in which I am not now.
I graduated, and now im pursuing a master's degree.
For different reasons my master's degree is in an area that helps me to work.
However, I have always liked biodiversity, working on it and for it.
Can you be a researcher and get recognition from the outside?
Without being affiliated with any institution or laboratory.
How can i do it?
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Patricio Pellet, Thanks for your good question! I did it with odd jobs, being a boat carpenter & painter, dishwasher for a year in large resort hotel, long stretches of unemployment with and without benefits, 4 years as a technical librarian, and decades of living with what has been essentially the complete support of a loving wife. Only now, through this RG platform, am I finally gaining some recognition for my work. I still have problems trying to publish. But at least I continue to pursue independent satisfaction of my curiosity. ;-)
With all best wishes for your continuing successes; respectfully;
RAW DATA & Explanations .csv.pdf:
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I need to know, if the temperature around 60°C-70°C can efficiently kill the enzymes that involve in non-structural carbohydrate cleavage.
In one experiment we´ve boiled root samples in 50% ethanol for at least 15 min at 80°C and we´re sure that the enzymes were killed as we compared the results with liquid nitrogen and subsequent lyophilization procedure and it was comparable. We´ve also tried a procedure where it was only put into 50% ethanol in ambient temperature without boiling and only the total sum of carbohydrates was comparable with that of liquid nitrogen treatment and the ratio of free sugars to polysaccharides was different, so it implies that the enzymes were not killed immediately.
What will happen if we boil it in 50% ethanol, but the temperature is lower – 60/70°C? Is the standard 80°C :
1) the lowest possible for the enzyme denaturing?
2) kind of „excessive“ just to be sure that the enzymes are killed and also the best for the extraction of carbohydrates (the highest yield)?
Does ethanol by itself stop the enzymes?
I´ve searched in the literature and for the temperature 60-70°C, I´ve found only air-drying treatments which are not efficient for the enzyme stopping. And in case of putting the samples into liquid solutes, I´ve found temperatures >80°C. Most of the studies used pure water or 80% ethanol instead of 50 % as a medium.
I´ve found 1 paper where they discuss the lethal temperature for woody tissue in case of fire and it was 60°C. But they mentioned that the mitochondries are killed, I´m not sure if also the carbohydrate splitting enzymes are stopped (fructanases, sucrase, amylase, α-galactosidase etc.). When I searched for the information about individual enzymes in vivo, I found only treatments with t>80°C. And in case of commercial enzymes I found that these enzymes work the best around 40-60°C and then the activity decreases (which does not mean that they´re killed, I assume) and that they become unstable. But most of these commercial enzymes were of microbial or fungal origin.
Does anybody have an idea? Or is it necessary to try it experimentally...
Thank you!
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Chinaza Godswill Awuchi Thank you for the links, but they don´t really respond to my questions, one is a review and the second uses 75°C air drying instead od boiling in a solute. I´ll search more. Best regards. Zuzana
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Ozodbek Abduraimov
, Thanks dear Ozodbek,
The blow research article has been conducted from this work, and another paper under editing.
"A novel horizontal subsurface flow constructed wetland planted with Typha angustifolia for treatment of polluted water".
Thanks again
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Hi everyone,
I search a database or a review listing the capacity of vascular plants to storage carbon, nitrogen or other important chemical elements.
I work actually on a mountain area (Swiss Alps - Vaud Alps) but if you have european data (only riparian and terrestrial plants) I'm interested too.
Thanks for your time and your help.
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Hi!
Finally I find 'TRY Plant Trait Database '
I don't know if all species are register but it's really complete!
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Hello,
I have a dataset derived from a multi-species experiment that I carried out.
I have 30 different plant species from several families and 3 geographical groups. I applied 6 different treatments to 5 replicates from each species.
For the analysis I was thinking of a GLMM with germination % as response and group and treatment as predictors. However, I'd like to take into account the phylogeny of the species as a random factor.
I managed to create a phylogenetic tree (and vcv matrix) using the R package V.PhyloMaker, but now I can't seem to find a way to implement it in a GLMM. I'm aware of the package pez, but it doesn't really work for me as i don't have community composition data. Another solution seems the MCMCglmm package, but I'm not familiar with bayesian statistics.ù
Any suggestions would be highly appreciated!!
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Hi, try binaryPGLMM or MCMCglmm as you mentioned.
binaryPGLMM :
Perhaps this will help you for the MCMCglmm package:
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In an experiment I found that the fresh weight of the root was less than that of the stem, however when I found the dry weight, the weight of the stem was less than that of the root. Why are these differences?
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Dear Santiago,
the disproportions between fresh and dry root: shoot biomass could be caused by a "stress response" to some abiotic factor. In the case of green pepper, I would probably estimate it in terms of light factor (or temperature). The above-ground part of the young plants stretches abnormally (higher fresh weight) when there is a lack of light. This is one possible explanation...
Best regards,
BS
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How can we homemade measure the pH from a soil sample? I have two soil samples and I'm looking forward to knowing how can I measure the pH without technologies.
"pH is determined by measuring the hydrogen ion activity in an aqueous solution. A glass electrode, calibrated against a pH standard is used to do this. A sub-sample of soil is mixed with water or CaCl2 at a ratio of 1 part soil to 5 parts liquid and the pH of the suspension is measured after 1 hour shaking".
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@ Halley, you may very well measure your soil pH at home using pH strip by following the procedure: Dig for a Sample, Place 1 to 3 Teaspoons of Soil in a Clean Glass, Pour in Distilled Water, Agitate the Soil Vigorously by Stirring or Swirling, Pour Soil Sample Through a Coffee Filter and Into Another Clean Glass, Dip the pH Test Strip into the Liquid, Note the pH from colour change. You may also use pH tester if you have. Accuracy will depend on the range they cover, the number of colored spots, and the general quality of the product. Because the important pH range for soil is between 5.0 and 8.0, test strips covering this range are better than ones covering a wider range. A product with a range of 0.0 to 14.0 is quite useless for soil.
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To all, how do we harvest hairs for transcriptome? For large root hairs, I presume, just put in liquid nitrogen and then inside a falcon tube shake it well to dislodge the frozen root hair? But what when we work with coleorhiza hairs on seeds? Any suggestions???
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Do you want to do experiment by using liquid nitrogen ?
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" Pitfall trapping is the standard method for collecting ground-dwelling arthropods and soil fauna in studies of ecological and agricultural entomology " ( Ruiz-Lupión et al. 2019).
In my current research assistant position I am working on analysis of macro-fauna in forests. We use pitfall traps to assess the abundance of macro-fauna in a given area. I'm curious to learn more about other methods used for this sort of analysis.
  • What methods for pitfall trapping have you used, if any?
  • What were the advantages/disadvantages and what would you have changed about the method you used.
Our methods are as follows:
  1. Briefly, we plant a plastic cup in the ground with a cover on top (to make sure mammals or larger animals do not enter the trap but only macrofauna can enter)
  2. we leave the cup for several weeks
  3. The macrofauna fall into the cup and are preserved by antifreeze, which are then taken into lab for identification and abundance counts
  4. By measuring the area of the cup's top, and how many bugs have fell into said area, we can then gain a better understanding of the abundance of macrofauna in the area
In a study reviewing pitfall traps, Ruiz-Lupión et al. (2019) states the factors which should be considered by ecologists using pitfall traps. They state, "the capture rate of arthropods in pitfall traps is proportional to their activity, and the number of individuals that each trap catches may or may not reflect their true abundance, and instead just their activity. Thus, the rate of capture is proportional to the joint effects of abundance and activity, something that has very often been overlooked by ecologists for a long time... [Nonetheless,] activity estimates from pitfall trap catches can still be biased because of multiple factors such as the surrounding habitat structure or the environmental conditions such as temperature and water availability. Additional factors could be the vertical distribution of the soil and leaf litter layers, as well as the attraction or repulsion of preservative fluids, detergents, or baits, the effects of which vary according to the taxon, sex, season, and environment. Specifically, if a trap retains excessive amounts of water, it could act as an attractor for the fauna, especially during drought periods, therefore biasing the estimates of activity. "
References:
Dolores Ruiz-Lupión (2019). New Litter Trap Devices Outperform Pitfall Traps for Studying Arthropod Activity. Insects 2019, 10(5), 147; https://doi.org/10.3390/insects10050147
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This is on RG now. Fitzgerald L.A. 2012. Finding And Capturing Reptiles. Pp.77-88. In R.W. McDiarmid, M. S. Foster, C. Guyer, J. W. Gibbons, and N. Chernoff (eds.), Measuring and Monitoring Biological Diversity: Standard Methods for Reptiles. University of California Press, Berkeley, California.
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I need to find databases for phytochemicals (plants' secondary metabolites) other than Dr. Duke's Phytochemical database and Golm Metabolome Database. Any other suggestions?
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I think that any phytochemical database my not satisfy the aim of such a collection of information but can give some insights about such phytoconstituents. This is because of the variation in the ecological and seasonal conditions which eventually lead to a significant difference in the quality and quantity of these chemicals.
All the best
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I have desined a linear controller in frequency domain,C(s).As my plant is in time domain,I need to transform C(s) into C(t) by inverse Laplace transform.
According to the diagram given below,in frequency domain,the relationship between error(e) and input(u) can be represented by u(s)=C(s)e(s).My question is that,after transformation,does the eqation,u(t)=C(t)e(t),exist?If not,how to express input(u) by C(t)?
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You would look at the closed loop impulse response. And if you have many inputs, you would look at the impulse response due to each input.
This can be done easiest by sampling the frequency response in the frequency domain and using the inverse DFT. If you sample to an end frequency FE, then the sample rate of the impulse response generated would be 2*FE.
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Hello,
I'm planning to conduct a multi-species experiment to measure different plants' response to grazing. However, I've read that clipping is not a reliable way to simulate the grazing act, so I was wondering if anyone could share their ideas on how to circumvent this issue. I would use real animals but working with many plant species I couldn't guarantee an equal level of grazing for each. Some papers suggest clipping of the neighbour plants to simulate grazing but I'm not convinced. Any idea is much appreciated!
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I agree with James Des Lauriers
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Is this Vitis vinifera CV Shiraz (Syrah) plant affected by frost damage? Sorry for the wrong orientation of the picture!
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What were the temperatures when you seen this damage on this variety. Regards
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Dear all,
This specimen have been found in an abandoned field margin in the Black Sea region of Turkey.
I would appreciate for any a suggestion,
Best...
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Morina persica L.
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This plant species was observed growing on basal zone of a wall of Varanasi city in Uttar Pradesh state of India.
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It is not Ficus religiosa.
Thanks!
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What percentage of plants are native species & what percentage are semi-mature tree?
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Agree with Victor ...
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Kindly list out the plants, or any research article
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Resveratrol is a natural polyphenol found in more than 70 species of plants such as grapes (Vitis vinifera), cranberry (Vaccinium macrocarpon), mulberry (Morus alba), pistachio (Pistacia vera) and peanut (Arachis hypogaea).
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 I have collected this plant from Anathagiri hills near Aruku valley of East Ghats of India.
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Thank you Dr Tiwari for your kind inputs.
Regards...
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Hello,
I'm growing different accessions of Arabidopsis thaliana and so far we have been harvesting them by pouring the media over a simple sieve, then putting them on paper towels for a minute to try to remove excess media. However, too much still remains and the samples become total rocks in the freezer and it makes metabolite (MeOH) extraction really difficult.
Is it okay to use soft vacuum filtration for a few seconds to harvest the seedlings? Which type of membranes can I use with 0.5 MS (pH 5.7) media? Our department generally stocks PES.
Or maybe I should do the extractions right away?
Thanks,
Casey
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Thank you all for the helpful answers!
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Dears,
Do you know where it is possible to find reliable datasets on crop pest occurrences reporting also the exact coordinates? I have tried to download the CABI pest distribution data. However this reports only the coordinates related to the centroid of the region where the pest is present.
Many thanks for your kind support.
Best regards,
Giorgio
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Dear colleagues,
Many thanks for your kind support.
I will go through the papers and links you have provided.
Best regards,
Giorgio
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Does anyone know in which species the grass allergen Phl p5 occurs? It was originally isolated from the grass species Phleum pratense so it must at least occur in that species. It stand to reason that it might also occur in other species of the genus Phleum. A few papers states that it is universal in many grasses, but with poor documentation.
Can anyone provide conclusive evidence and/or references in which the authors state in which species (or cultivars) the allergen occurs and/or have been isolated from? I welcome answers from all researchers along with special interest from expert knowledge primarily from plant ecology, aerobiology, immunology and other health professionals.
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Often due to phenolic content in the plant, the DNA pellet which is extracted turns brown in colour. how to prevent the browning.
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Did you find a solution?