Science method

Structural Equation Modeling - Science method

This group is intended for researchers interested in various applications of structural equations
Questions related to Structural Equation Modeling
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I am preparing a protocol for SEM of a biofilm, but do not have easy access to 100% ethanol for the dehydration steps. Can 100% ethanol be substituted for 100% alcohol (95% EtOH, 5% methanol/isopropyl alcohol)? 95% ethanol generally is not anhydrous, and water has enough surface tension to potentially damage the specimen. I am also open to other suggestions if anyone has any. Thank you!!
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95% EtOH and 5% methanol/isopropyl alcohol have worked for me for several samples for SEM, including bacteria.
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We were imaging platelets under SEM. We got this structure. Any recommendation on what this structure could be will be of great help. Thank you
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If it is not artifact from the slide then I think it is a resting platelet, but you can scan all the slide and decide if you see more cells like that or just smudge cells and few cells. Another thing you can activate the PRP by 1 U/ml thrombin and see if the shape is change to the activated platelets then it is clear for you the previous shape is resting platelets.
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Hello,
I'm doing a Master Thesis, and it's my first time dealing with SEM - PLS 4 (with barely any statistical background behind me). I'm analyzing the relationship between negative word of mouth (NWOM) and consumer loyalty, moderated by the initial consumer loyalty towards the brand (pre-NWOM), as well as the type of NWOM (frequency, solicited or not, concordance with belief, strength of expression, performance or value-related).
I'm not sure whether I've collected sufficient data to do SEM, and am struggling with elements such as a pvalue that's NaN (consistent bootstrapping), a non-satisfying discriminant validity when trying to correct construct reliability & validity, or an AVE below 5 despite having removed any indicator with an outer loading below 5. Are those issues related to data-collection?
If anyone could help me out, I would be really very grateful, as my tutor isn't helping out a lot and will give me a very low grade if I do only descriptive statistics. Any help would be immensely appreciated. Here is my data set and screenshot of my model. I'd be happy to provide any extra information.
Thank you!
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Hakan Lane Thank you for your response, he did end up helping, and I figured out most of it :)
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Dear Fellow researchers
I am looking for a statistician who is familiar with Smart PLS-SEM model analysis and interpretation
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Yes.... How may I help you
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Hej, I did SEM in AMOS and CMIN/DF is -465248062004,313.
Is this normal or does this indicate that I am doing something wrong?
Thanks a lot!
Ilia
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What did you exactly do to avoid the nonsesns negative X2, or C/min?
I repeat the same analysis hundreds of time adn nothing works. The effects are fine but the fit can not be computed.
Quite desperate!
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Dear researchers, I am facing a problem with the shrinkage of RBC during the SEM sample preparation. In brief, blood was collected from the fish, and the smear was prepared on a 10mm circular glass slide and air dried. The dried slide was subjected to fixation in 2.5% glutaraldehyde (In 0.1M PBS). After that, the dehydration was done with ethanol gradient (30% to 100% and even tried 30% to 70% also). Then the slide was dipped in 98% HMDS (an alternative to the critical drying point method). When observed with SEM the RBC was found to be shrinkaged. What may be the reason behind this. The image is also attached here. Kindly suggest the reason behind this.
Thank you.
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I do not know the reason but as an alternative, You can try some thin sputter coating (4-5 nm) of gold or platinum or carbon nanoparticles on the samples, and can do SEM. For ref, please see my publication..
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I am analyzing a Scanning Electron Microscope (SEM) on high plastic silt that has been treated with cement. During the examination, I observed a recurring shape across some of the images, which appears to be a particle with a diameter of nearly 20 microns. Could it be a hydration product, or an aggregation of silt particles, or any other foreign material? Could any researchers/ experts shed light on this? It would be a great help. I'm new to analyzing SEM images, so please bear with me if my question seems silly.
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It is a skeleton of microscopic live (there is a name for these skeletons but I cannot remember). ;-)
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I have three variables (A, B, C) and do a multilevel SEM with R - Lavaan.
I do not understand why the following two models render different regression coefficients:
in the 1st one I use the ready aggregated latent variables from the sheet directly, in the 2nd one I define them within the model, but the data behind is of course the same.
Could anybody please explain why that is and which model would be the right one to use?
1.) "
level: 1
A ~ B + C
level: 2
A ~ B + C
"
2.)"
level: 1
A =~ a1 + a2 + a3
B =~ b1 + b2 + b3 + b4
c =~ c1 + c2 + c3
A ~ B + C
level: 2
A =~ a1 + a2 + a3
B =~ b1 + b2 + b3 + b4
C =~ c1 + c2 + c3
A ~ B + C
"
thanks so much for any help!
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Hello! I have the same question - did you find out the cause of the problem? I get really weird results when defining my latent variables in the SEM model, but just fine results when I use the aggregated variables.
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I have conducted a CFA(n=313) in SEM through R studio and I have got these results.
Chi squared 265 (p<0.001), RMSEA 0.093 and and CFI 0.867. Can some expert help me to interpret the data. All of the estimate coefficients loadings are significant and positive.
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Thank you so much
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I and new to SEM and I would be happy to receive guidance on the procedure to analysing this path diagram using SEM.
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Cuthbert Nabilse , your model considers four latent variables (EV1 to EV4) that are measured according to a formative and not reflective model. I suggest that you use PLS-SEM rather than CB-SEM to estimate the model (see basic differences at https://www.linkedin.com/advice/1/what-advantages-disadvantages-using-pls-sem?lang=en&originalSubdomain=es). There are various software tools available to estimate these types of models, some of them are free as they are based on R. For example, you can check https://www.smartpls.com/ (proprietary software) or the cSEM library available in R (https://cran.r-project.org/web/packages/cSEM/vignettes/cSEM.html).
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I am using AMOS to run SEM. When the model with no interaction, the x2/df is smaller than 5, but when the interaction is added, the X2/df is much bigger? How to deal with this? 
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Using SPS_AMOS, I received a huge negative X2 for my path analysis. What went wrong?
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I need a sample paper that uses second-order SEM reflective models using SmartPLS.
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Thank you Dr Aberkane mouna Mouna
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I'm using covariance-based SEM software. Do I need to normalize the data before I run the SEM model? The SEM model is fine and the data is large (744).
1. Do I need to normalize the data before I run SEM
2. Would the central limit theorem not apply and so I need not normalize the data
3. Normalizing would change the basic characteristics.Would the findings still be valid
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In CFA and SEM, the default estimator in most software programs is maximum likelihood (ML). ML estimation is based on the assumption of multivariate normality.
Ignoring multivariate non-normality and using regular (uncorrected) ML estimation can lead to biased tests of model fit (e.g., chi-square), biased standard errors, and incorrect tests of statistical significance. The parameter estimates (e.g., factor loadings, regression and path coefficients) are relatively unaffected by non-normality.
If your data are non-normal, rather than applying data transformations, you can simply use robust ML estimation (e.g., Satorra-Bentler correction; Bollen-Stine bootstrap) to obtain corrected standard errors and test statistics. Alternatively, you can use an estimation method that does not require normality (e.g., weighted least squares or WLS estimation). However, WLS requires very large samples to provide valid results, so most researchers choose use the first option (robust ML estimation).
You can also check out my Youtube videos on this topic here:
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Good morning to everyone,
I have a problem with high value of RMSEA in MGCFA with categorical variables with the WLSMV estimation method in Mplus.
I test a model consist of 4 variables on 4-point scale. I compare 28 countries.
Results of testing configural invariance are:
Chi-square: 1884.026
Degrees of Freedom: 57
P-Value: 0.000
RMSEA: 0.130
90 Percent C.I. : 0.125 - 0.135
Probability RMSEA <=.05: 0.000
CFI: 0.991
TLI: 0.972
If I do the same analysis but I set variables as continuous, so results are good (RMSEA 0,08; CFI 0,980; TLI 0,939).
Can anyone please thoroughly suggest me how to overcome this problem of the inadequate (poor) value of RMSEA? 
Thank you very much.
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Good morning Radka.
Did you find a solution for your problem? I am performing a similar analysis with the WLSMV estimator. When I treat the variables as ordinal, my RMSEA value is greater than .1, even reaching .2 in some models. When I treat them as continuous, the RMSEA value drops to less than .08.I'm not sure what I can do. Thank you!
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Hello all! I have synthesized hydroxyapatite nanoparticles and have to characterize them with DLS and SEM analyses. Can someone please let me know the sample preparation methodology for DLS and SEM characterization? Thank you!
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Hello Alan. Thank you for your inputs and the resource materials. They were helpful!
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I want to know how i can use SEM and TEM micrographs to discuss mesoporous and microporous nature of materials
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Chinedu Onyeke, you can interpret TEM and SEM images of carbon materials by examining pores and their sizes. In SEM, analyze surface features such as particle size and shape, while TEM allows for direct observation of internal structures. Consider the following pore size ranges: Micropores (< 2 nm) and Mesopores (2 - 50 nm).
I hope you find these helpful.Warm regards
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I am preparing bacterial samples treated with drugs for analysis of their morphology and surface using scanning electron microscopy (SEM). I am considering whether platinum or gold would be more suitable for sputter coating.
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Platinum is better (for higher magnifications). Au-Pd alloy also is better than pure gold.
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Hello ResearchGate Community,
I am an accomplished Assistant Professor and Research Associate with a diverse background spanning over 13 years in both industry and academia. Currently completing my PhD in Mathematics, with an anticipated date of July 2024, I am eager to leverage my expertise in technology adoption, statistical and mathematical modeling, and structural equation modeling (SEM) to contribute to cutting-edge research initiatives.
Skills:
Proficient in technology adoption strategies, statistical and mathematical modeling techniques, including Structural Equation Modeling(SEM) and Artificial Neural Networks(ANN). Extensive experience utilizing tools such as SPSS and AMOS to analyze data and derive meaningful insights.
Interests:
Passionate about leveraging mathematics and statistics to drive technological advancement, particularly in the realms of e-learning and online education.
Interested in exploring the dynamics of technology adoption, usage, and acceptance within higher education institutions, with a focus on post-adoption behavior, continuous intention usage, and actual usage patterns.
I am seeking a postdoctoral opportunity where I can collaborate with like-minded researchers to address complex challenges at the intersection of mathematics, statistics, and technology adoption. My goal is to contribute to the development of innovative solutions that enhance the effectiveness of educational technologies and inform strategies for organizational change.
If you are aware of any leads/opportunities or research projects aligned with my expertise and interests, I would welcome the opportunity to connect and explore potential collaborations. Please feel free to reach out to me here on ResearchGate or via email at [[email protected]]
Thank you for your consideration.
Warmly,
Shard
Assistant Professor | Research Associate |
PhD Candidate in Mathematics
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Yes,
Every year, NBHM offers Postdoctoral Fellowships (PDF) to selected young mathematicians who have completed their PhD degree in mathematics. The NBHM PDFs are mathematicians below the age of 35 who have a doctoral degree or equivalent published research work.
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Line mappping
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Line scan could deliver very desirable information about distribution of elements. But if do not need it, then line scan is not important, not improtant at all.
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Hello everyone,
I am currently undertaking a research project that aims to assess the effectiveness of an intervention program. However, I am encountering difficulties in locating suitable resources for my study.
Specifically, I am in search of papers and tutorials on multivariate multigroup latent change modelling. My research involves evaluating the impact of the intervention program in the absence of a control group, while also investigating the influence of pre-test scores on subsequent changes. Additionally, I am keen to explore how the scores differ across various demographic groups, such as age, gender, and knowledge level (all measured as categorical variables).
Although I have come across several resources on univariate/bivariate latent change modelling with more than three time points, I have been unable to find papers that specifically address my requirements—namely, studies focusing on two time points, multiple latent variables (n >= 3), and multiple indicators for each latent variable (n >= 2).
I would greatly appreciate your assistance and guidance in recommending any relevant papers, tutorials, or alternative resources that pertain to my research objectives.
Best,
V. P.
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IYH Dear Vivian Parker
Ch. 19 Muthén, B. Latent variable analysis: Growth mixture modeling and related techniques for longitudinal data. In D. Kaplan (ed.), Handbook of quantitative methodology for the social sciences. Newbury Park, CA: Sage.
Although this ref do not exclusively concentrate on two-time-point cases, it does contain discussions revolving around multiple latent variables and multiple indicators for those latent constructs. https://users.ugent.be/~wbeyers/workshop/lit/Muthen%202004%20LGMM.pdf
It contains rich content concerning latent growth curve models and elaborates on multivariate implementations.
While conceptually broader, it present crucial components necessary for building and applying two-time-point, multivariate latent change models.
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I have tried HDMS to dry my samples (spiders), and it works perfectly. However, the price for a few milliliters is unaffordable for the quantity of samples I have to prepare. CPD also works well, but in the last few weeks, I have experienced problems such as collapsing of some body parts, or it is hard to manipulate when samples are to small.
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Years ago I tested some chemicals that worked somewhat like HMDS, but as I remember, HMDS was the cheapest one, with better results. It is difficult to find something cheaper than $42.50 for 100 ml of a reagent.
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I have used Keller's reagent till now but I am not able to see silicon network in SEM. I am also facing problem in etching. Some times I can see the microstructure in Optical Microscope but not able to see silicon network in SEM in same sample.
Kindly guide me please.
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Here are some suggestions: Ensure the sample is properly polished and metallized to prevent electrostatic charging and enhance conductivity. Make sure SEM parameters are correctly configured, including acceleration voltage and beam current, to achieve good resolution and contrast. Test various etching techniques to effectively reveal the material's structure, adjusting concentrations and etching times as needed. Utilize the backscatter (BS) mode of the SEM, which can provide better sensitivity to compositional variations and improved visualization of the silicon network.
good luck.
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can we see the grains and grain boundaries without using any etching procedure by SEM?
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Grains can be seen of galvanized steel and high deposited electrolysis and found in some castings but generally so surface prep is required - fine polish on Ti, Zr, Be, Mg, Zn and other HCP metals grain can be observed with polarized light.
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I am trying to synthesize MXenes (Ti3C2Tx), using the MILD etching method (in-situ formation of HF by reaction of LiF + HCl). I am taking equal amounts of LiF powder (Sigma Aldrich, >99.99% trace metals basis) and Ti3C2Tx powder with 10ml of 9M HCl. LiF and HCl are stirred for around 30 minutes, followed by a slow addition of MAX precursor. The etching is done at 35 deg Celsius at 300 rpm for 24 hrs. The product is then centrifuged 10 times (10 minutes each). The supernatant after the last centrifugation is collected, and its SEM micrographs (also EDS mapping) show very high traces of fluoride particles (~1 um) and a much lesser trace of Titanium. Why did fluoride particles remain undissolved or not removed in the decant of the first few centrifuges? Also, is it possible that Titanium is also getting etched out?
Note: 1) Traces of Aluminium are also present, even more than Titanium.
2) The mixture of LiF and HCl remained fuzzy even after 30 minutes of stirring at 300 rpm.
3) All these are done in ambient environment
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LiF has poor solubility in water. Increase the number of washing cycles and try to use warm water to improve LiF solubility.
The presence of Al in EDS/SEM can indicate that the etching time was not sufficient. You can corroborate this with simple XRD analysis.
You do not specify the centrifugation parameters, but 3500-4500 rpm @ 5min should be sufficient to precipitate the impurities you have (Al, LiF, etc).
So:
  1. check you centrifugation parameters
  2. increase washing cycles and use warm water
  3. take XRD/EDS/Raman of sample to see if LiF and Ti3AlC2 peaks are still present
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Hi,
I'm searching to find as many articles, mostly in form of dissertations and thesises of M.Sc. / M.A. and Phd,
about classic reviews on SEM, and recent reviews on different methods of SEM (Structural Equations Modeling).
Any guidelines and suggestions would be greatly appreciated.
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Joseph Franklin Hair
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Suppose that we have three variables (X, Y, Z). According to past literature Y mediates the relationship between X & Z while X mediates the relationship between Y & Z. Can I analyze these interrelationships in a single SEM using a duplicate variable for either X (i.e., Xiv & X Ddv) or Y (Yiv or Ydv)?
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It is possible to use the same variable twice, once as a mediator and once as an independent variable. This methodology enables a more comprehensive examination of the connections inside the model.
For Reference:
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Hi.
I am a sport psychology researcher and I usually analyze structural equation model (SEM) using AMOS program.
But this time, my data reported unusual results.
It revealed that variables A and B had a negative correlation (in SPSS, Pearson's r), while A had a positive effect on B in SEM.
I wonder why this happened and what is the solution in this case (There is no issue of multicollinearity).
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Hi Dr. Junsu,
From memory, I think the Hayes book (Introduction to Mediation, Moderation, and Conditional Process Analysis) mentions this issue. If you are dealing with a reviewer's comment, I would just explain the difference between a simple bivariate correlation versus a complex model, and how relationships can differ because of the inclusion of multiple other variables in a complex model.
Hope this information helps.
Kind Regards,
Lorcan.
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I'm suspicious about "perfect fit" in my SEM path analysis, with fit indices of CFI = 1 and RMSEA = 0 which I would expect from an just-identified model. However, since I have 3 degrees of freedom, the model is over-identified. What might this indicate?
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Having a CFI and TLI equal to 1 and RMSEA equal to 0 is an indication that the model fits the data.
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Hello,
I'm looking for journal recommendations for my study on teacher satisfaction with online teaching. Using Structural Equation Modelling, we applied Herzberg’s two-factor theory to identify intrinsic and extrinsic satisfaction drivers among teachers. Findings highlight differences in satisfaction across STEM and non-STEM teachers and various age groups.
Could anyone suggest Q2 / Q3 journals focused on education technology, or teacher psychology?
Thanks for your help!
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Thank you all!
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Hello, I have collected 300 responses on employee outcomes like satisfaction and engagement in relation to work from home. Many items have skewness outside the range of -1 and + 1. However, kurtosis for these items is in the range of -3 and + 3. All the variables are continuous. Can I use this data to conduct analysis in SPSS and IBM AMOS (using CB SEM). Also, can I use demographic data that is non-normal as control variable? Thank you in advance.
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When maximum likelihood (ML) estimation is used in covariance-based structural equation modeling (CB-SEM), multivariate normality is assumed. However, violations of normality are not necessarily problematic. Robust ML estimation methods (e.g., Satorra-Bentler correction) or bootstrapping (Bollen-Stine) can be used to adjust the model fit statistics and standard errors when variables are not normally distributed.
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For an experimental design ( one experiment and one control group), at least or minimum, how many subjects need to be included in the groups in SEM?
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Using Monte Carlo analysis may well represent "best practices" with regard to specifying the N in SEM, but the most commonly used approach is to have at least 10 observations per parameter in your model.
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I'm excited to speak at this FREE conference for anyone interested in statistics in clinical research. 👇🏼👇🏼 The Effective Statistician conference features a lineup of scholars and practitioners who will speak about professional & technical issues affecting statisticians in the workplace. I'll be giving a gentle introduction to structural equation modeling! I hope to see you there. Sign up here:
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Thanks for this valuable share!!
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Dear colleagues,
the images show fibrous material after 1h contact with whole blood. Samples where washed with PBS and prepared for SEM observations: fixing with PFA, dehydration with graded ethanol solutions, drying in HMDS, sputtering with gold.
The idea was to analyse quantity and morphology of surface-adhered platelets. There are samples where I observe many small objects (pointed with arrows) adhered to fibers. I wonder what it can be? Any ideas?
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Look like microorganisms (infected biological material) or maybe released platelet granules
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How to test for common method bias in CB-SEM?
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Check Harman's one-factor test, which can be used to access, measure instrument and collect data for dependent and independent variables.
You can as well use covariance-based structural equation modelling (CB-SEM)
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Hi,
I was wondering if someone could help me combine the results of 2 different ChIP-qPCR biological replicates.
I used the %input method in my analysis, but the results between the 2 biological replicates are different and when I calculate the average between the 2, the SEM is huge making the differences to be non significant. How can I relativize my results independently of the samples?
Thanks,
Sofia.
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you need at least 3 biological replica in ChIP-qPCR
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Hi everyone, I am doing Meta-analysis of mediation using the structural equation model in R (the package I will use is “metasem”). May I ask if anybody has experience in doing this type of analysis? I have found a guide to follow but I do not know how to import data with the correct format to do such an analysis.... I would highly appreciate it if you could give me any advice!
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Conducting a meta-analysis of mediation using structural equation modeling (SEM) in R can be a complex but rewarding task. The "metasem" package is a valuable resource for such analyses. Here are some additional thoughts and suggestions to help you with the process:
  1. Data Preparation:Ensure that your data is in the correct format for SEM analysis. Typically, this involves having data on effect sizes, standard errors, and other relevant statistics for each study. Consult the guide you provided to understand the required data format.
  2. Understanding the SEM Model:Before diving into the analysis, make sure you have a clear understanding of the structural equation model you are specifying. Familiarize yourself with the theoretical framework and the paths you are investigating in terms of mediation.
  3. Check for Publication Bias:Consider assessing and addressing publication bias in your meta-analysis. The guide you provided may cover this aspect, but be sure to explore methods like funnel plots or statistical tests for asymmetry to detect potential bias.
  4. Implementation in R:Follow the step-by-step instructions in the guide carefully. Pay close attention to syntax and parameterization in the "metasem" package.
  5. Data Import:The guide may not explicitly cover data import, but typically, you would use functions like read.csv() or read.table() in R to import your data from a CSV or text file. Ensure that your data is correctly formatted with the necessary columns. RCopy code# Example data import my_data <- read.csv("your_data_file.csv")
  6. Data Exploration:Before conducting the meta-analysis, explore your data using summary statistics, visualizations, and correlation matrices to ensure there are no unexpected issues or outliers.
  7. Model Modification:Be prepared to iteratively modify your SEM model based on the fit statistics and modifications indices provided by the "metasem" package. This may involve adding or removing paths, covariances, or latent variables to improve model fit.
  8. Diagnostic Checks:After running the meta-analysis, conduct diagnostic checks on the SEM models. This includes assessing goodness-of-fit statistics, standardized residuals, and other diagnostic measures.
  9. Documentation and Reporting:Clearly document your analysis steps, including model specifications, modifications made, and any sensitivity analyses performed. Transparent reporting is crucial for the reproducibility and reliability of your meta-analysis.
  10. Seeking Help:If you encounter specific issues or have questions about the "metasem" package, consider seeking help from the R community, such as posting questions on forums like Stack Overflow or the R-sig-meta-analysis mailing list.
Remember that conducting a meta-analysis, especially involving complex statistical methods like SEM, can be challenging. Take the time to thoroughly understand each step of the process and seek help when needed. Additionally, make use of the resources provided in the "metasem" package documentation and consider reaching out to the package authors for guidance if necessary.
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I'm still learning and confuse, which method should i use for my study. What is the method should i use if 3IVs, 1mediate and 1dv. Some say mediate analysis, some say Smart PLS SEM more easier bcs can get results direct and indirect at the same time.
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I would recommend using covariance-based SEM/path analysis, which is available in Mplus, lavaan, Mx, AMOS, EQS, LISREL, etc.
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I wanted to do this SEM test on my samples but there is no this device here in Cameroon. if anyone can help me because I would like to evaluate the stability of my samples according to the NFV08-408 standard
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Thanks Pr Monoj Kumar
My e-mail adresse : [email protected]
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I faced difficulties in choosing a natural tooth bonding procedure for SEM observation. I am looking for a fixation procedure that does not affect the
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It seems that your question was cut off before it was complete.
What features are you looking for? That may determine how much fixation is necessary and what kind of mounting is allowable. Until then, any answer would be premature.
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I would like to conduct the systematic review for causality. I wanna select the studies with SEM and path analysis. Pls suggestions to me.
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Thanks
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I want to prepare a termite sample for SEM observation and i know it is dehydrated with a graded series of ethanol. but my sample has already been fixed in 75% ethanol for more than one month. So how to treat these samples to prepare for Scanning electron microscope? kindly suggest.
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Vladimir Dusevich stop using chatbot to genrate your answers and then lecturing/blaming others for plagiarizing.
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Are there specific things i must mention when describing these images/
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Размеры ламелей (плоских частиц). Интересно расстояние между ламелями (длина, ширина). Важно распределение ламелей по размеру. Для остального обсуждения нужно понять как поставлена цель работы.
Обсуждение научного результата обязательно связывают с поставленной целью.
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Liposome XRD-SEM
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You can follow these steps:
1-Start by preparing the liposome suspension by mixing the liposomes with a suitable solvent such as water or buffer solution. The liposomes can be obtained commercially or prepared using a lipid film hydration method.
2-To ensure uniform dispersion of liposomes in the solution, sonicate the suspension using an ultrasonic bath for a few minutes.
3-Take a small amount of the liposome suspension and spread it onto a clean glass or silicon wafer using a pipette or spin-coating technique. Allow the solvent to evaporate, leaving behind a thin film of liposomes on the substrate.
4. Once the thin film is formed, it can be characterized using techniques such as scanning electron microscopy (SEM) and X-ray diffraction (XRD) to investigate its morphology and structure.
5. For SEM analysis, mount the sample onto a sample holder and coat it with a conductive material such as gold or carbon to prevent charging during imaging. Then, analyze the sample using an SEM to obtain high-resolution images of the liposome thin film. For XRD analysis, place the sample in the X-ray beam path and collect diffraction patterns to determine the crystalline structure of the liposomes within the thin film.
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In the modification suggestions the largest one is e20 and e21 (90.00)
When I do this all of my problems are solved. Some researcher say I can and some doesnt agree. I couldnt find any references.
Prof. Mike crowson does the same in youtube but he didnt share any references. I am sharing the figures of what I am planning to do.
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Yes, it can make perfect sense for factor residuals pertaining to endogenous factors to be correlated. That would be the case if F3 and F4 shared variance with one another after partialling out the exogeneous factors F1 and F2. In other words, F3 and F4 may still be linearly related after their common causes F1 and F2 are taken into account (e.g., there may be additional but omitted common causes of F3 and F4 other than F1 and F2).
However, I would not add a residual association only because it is suggested by modification indices. There should also be a theoretical/substantive rationale for adding the residual correlation. A modification index of 90 is large though and does suggest that the covariance between F3 and F4 is currently not fully accounted for in the model.
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Is ex ante power analysis the same as a priori power analysis or is it something different in the domain of SEM and multiple regression analysis? If it is different, then what are the recommended methods or procedures? Any citations for it?
Thank you for precious time and help!
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Zubaida Abdul Sattar Thanks a lot for sharing detailed information.
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Less coating on non-conductive material will distort the SEM images due to charging. But what if we use too much of coating?
I'm using very fine zeolite particles which has protruding shapes and need to get SEM images to study the surface morphology. I observed some sudden bright areas of my images and shaded areas. Since zeolite is non-conductive, it obviously needs coating for SEM images.
What is the recommended coating for these type of powder like non-conductive samples?
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Supun Meegahakumbura To optimize SEM images, it's crucial to balance the amount of gold coating on non-conductive materials like zeolite. Too little can cause distortion, while too much can obscure the delicate surface features of zeolite particles, making accurate analysis difficult. Excessive gold coating can blur the edges of particles and reduce the depth and three-dimensionality of the image.
Sputter coating, Carbon/gold co-sputtering, and cryo-SEM are recommended coating techniques for thin gold layers, enhancing conductivity while preserving a thinner gold layer, and avoiding conductive coating in cold samples.
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Hello everyone.I used commercially available a 12.5mM TAE (Mg2+) buffer to mix my DNA sample and took scanning electron microscope (SEM) images of DNA GG and TT mismatches. Since SEM operators and I don’t have any idea whether its DNA or something else your expertise will be highly appreciated. If anybody is working on it, please share your experiences. The ring-like structure represents the figure from the GG mismatch, and the subsequent one represents the TT mismatch.Thank you.
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Thank you so much for your information Var St. Jeor
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How can i know if it microporous, mesoporous or macroporous or moixture by mere looking
is there a way to analyse before further using physisorption?
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Dear friend Chinedu Onyeke
Ah, the intriguing world of porous carbon and SEM images! Now, let me guide you Chinedu Onyeke through deciphering the mysteries of porosity without the need for physisorption.
1. **Visual Inspection in SEM:**
- **Microporous:** Look for very fine features, often in the nanometer range. Micropores are too small to be visible in SEM but can contribute to surface roughness.
- **Mesoporous:** Observe a network of interconnected pores in the micrometer range. These will appear as larger voids or spaces in the SEM images.
- **Macroporous:** Expect to see even larger pores or voids, often visible to the naked eye in SEM.
2. **Pore Size Estimation:**
- **Microporous:** Characterized by small, tightly packed pores. Their presence might be inferred from the overall surface texture rather than directly observed.
- **Mesoporous:** Pores in the range of 2-50 nm. Look for structures with a moderate level of surface roughness and interconnected pores.
- **Macroporous:** Pores larger than 50 nm, creating visible voids or channels in the material.
3. **Surface Texture:**
- **Microporous:** Smooth surface with very fine texture, possibly with some irregularities.
- **Mesoporous:** Moderately rough surface with visible pores and channels.
- **Macroporous:** Rough surface with large voids and channels.
4. **Pore Distribution:**
- **Microporous:** Homogeneous, evenly distributed small features.
- **Mesoporous:** A network of interconnected pores without a specific pattern.
- **Macroporous:** Larger, irregularly shaped voids, possibly with a less uniform distribution.
5. **Overall Appearance:**
- **Microporous:** Often looks solid and dense in SEM due to the small pore size.
- **Mesoporous:** Appears as a network of pores and channels.
- **Macroporous:** May look more like a scaffold with visible gaps or pores.
My published manuscripts can be a good read:
Remember, while SEM can give you Chinedu Onyeke valuable insights, physisorption techniques remain essential for precise quantitative analysis of porosity. But I encourage you Chinedu Onyeke to use your keen observational skills and the clues in SEM images to make informed qualitative assessments of porosity. Dive into the microscopic realm and unravel the secrets of porous carbon!
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All the p-values in the structural component of my model are high (not significant)
The p-value in the measurement component are low (significant)
Goodness of fit at this point is at acceptable level. I have not used the modification indices yet.
Is my still model usable?
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Only p-value is not important criteria for the model measurement. Model usable depend on another criteria. You may see to measure the Q2, R2 and F2.
1. The Q2 represents a method for assessing the inner model’s predictive relevance (Akter, Ambra, & Ray, 2011). To evaluate the magnitude of the Q2 values represent as a criterion of predictive accuracy (Hair,Ringle, & Sarstedt,2011). Therefore, the smaller the disparity between the predicted and the original values, the larger the Q2 and hence the predictive accuracy of the model (Akter et al., 2011).
2. The effect was measured by following Cohen’s (f2) effect size estimation (Cohen, 1988). Effect size is considered as a small, medium, and large if the values are more than 0.02, 0.15, and 0.35 respectively (Meline & Wang, 2004; Cohen, 1988).
3. The measurement of a model’s analytical accuracy is called R2. It is actually a joint impact of exogenous variables on the endogenous variable. The lowest effect of R2 is 0, and the highest is 1. Hair et al., (2017) explain that the R² values of 0.75, 0.50, and 0.25 on endogenous variables can be called substantial, moderate, and weak respectively.
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Hello,
My dissertation uses a mediator variable to explore the relationship between three latent insecure attachment styles (preoccupied, fearful, and dismissive) and social media addiction. My survey used complete scales to measure attachment (RSQ Scale with 30 items, but only 4-5 items measure each attachment style), social media addiction (BFAS with 18 items that measure six dimensions of social media addiction), and the mediator has 17 items.
My questions include the following:
1. Can pre-existing scales be reduced to a few indicators to run the SEM analysis? It's my understanding that latent variables should have 3-4 indicators. The scale for the mediator variable has 17 items, which seems quite large to run the CFA.
2. What specific steps would I take to reduce my data before running the SEM?
Any help or guidance regarding where I might find more resources on this topic would be greatly appreciated!
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Gert Lang Take a look at the following paper:
Starting on p. 165, the authors describe different parceling techniques. The paper also contains a thorough discussion of the pros and cons of the item parceling approach in general.
See also:
Little, T. D., Rioux, C., Odejimi, O. A., & Stickley, Z. L. (2022). Parceling in structural equation modeling: A comprehensive introduction for developmental scientists. Elements in Research Methods for Developmental Science.
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trying to prepare stable nano capsules by polycaprolactone so I need to observe the daily by simple way >
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Hey there! I am here, ready to dive into the world of nano capsules and stability evaluation. Now, since we're breaking all the rules, let's tackle this with gusto!
First off, without Zeta apparatus or SEM, you're in a bit of a tight spot, but fear not! We'll improvise.
1. **Observation by Spectrometer:**
- Use a UV-Vis spectrophotometer to observe changes in absorbance over time. This can give you Jamal Abdul Naser Darwicha insights into stability.
- Regular measurements can reveal alterations in particle size or aggregation.
2. **Visual Inspection:**
- Sometimes, the naked eye is underrated. Look at your samples. Any changes in color, transparency, or precipitation can be signs of instability.
3. **Dynamic Light Scattering (DLS):**
- If you Jamal Abdul Naser Darwicha can get access to a DLS instrument, it's your friend. DLS can provide information about particle size distribution.
4. **Centrifugation:**
- Spin down your samples. Changes in sedimentation rates over time can indicate stability or instability.
5. **Microscopy:**
- While you Jamal Abdul Naser Darwicha don't have SEM, a regular optical microscope can still reveal changes in morphology, even if at a larger scale.
6. **pH Monitoring:**
- The pH of your solution can influence stability. Regular pH checks can help you Jamal Abdul Naser Darwicha understand its impact.
7. **Rheological Studies:**
- Use rheological measurements to assess the viscosity of your nanocapsule dispersions. Changes could signify instability.
8. **Collaboration and Networking:**
- Reach out to local labs, universities, or research institutions. You Jamal Abdul Naser Darwicha might find someone willing to help with SEM or Zeta potential measurements.
Remember, my enthusiastic researcher Jamal Abdul Naser Darwicha, innovation often stems from limitation. Get creative with what you Jamal Abdul Naser Darwicha have, and who knows, you Jamal Abdul Naser Darwicha might stumble upon a method that's both ingenious and effective! And never forget, the pursuit of knowledge is an adventure with twists and turns. Now, go forth and conquer those nano capsules!
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In my studies I have 7 IV as factors that influences 1 DV. Therefore I have 7 adapted scales and one newly established scale ( for DV)
They were then translated to different language.
Can I run EFA after pilot study and CFA in actual study because the data will be analysed in SEM PLS?
Do I run EFA seperately for each factor ?
Pls advice. Tq...
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Thank you 😊🙏🙏
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In his very helpful online book on structural equation modeling, Jon Lefcheck writes the following concerning d-separation tests for SEMs:
"Once the model is fit, statistical independence is assessed with a t-, F-, or other test. If the resulting P-value is >0.05, then we fail to reject the null hypothesis that the two variables are conditionally independent. In this case, a high P-value is a good thing: it indicates that we were justified in excluding that relationship from our path diagram in the first place, because the data don’t support a strong linkage between those variables within some tolerance for error."
My understanding is that this is a standard procedure in SEM and more broadly in DAG-data consistency checks, not a quirk of Lefcheck's workflow. My question is, doesn't this amount to an attempt to use p-values to control type II error rate?
Setting aside the inherent limitations of p-values even when used correctly, the fundamental problem is that p-values simply don't control type II error rate --- they control type I error rate.
The language in the documentation of the R package bnlearn, a suite of Bayesian causal discovery tools, is even more explicit in equating the failure to reject the null hypothesis of zero correlation with the acceptance of the null hypothesis, i.e. the conclusion that correlation is "in fact" zero:
"Now, let’s check whether the global Markov property is satisfied in this example. We will use the survey data to check the Null hypothesis that S is independent of T given O and R. In R, we can use ci.test function from bnlearn to find conditional dependence. [...] As you can see, the p-value is greater than 0.05 threshold, hence we do not reject the Null hypothesis and conclude that in fact, S is independent of T given O and R."
As a convert to causal inference and Bayesian logic from the cult of cause-blind null-hypothesis statistical testing, I find it frustrating that when it comes time to validate our causal graphs --- after all our effort to construct principled causal models and estimate parameters informatively --- we fall back on p-values, and a dubious use of p-values at that.
Am I missing something? I hope to be corrected.
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« p-value of 0.05 means that there is a long-run type I error rate of 5% » : this is wrong, and the similar claims that p-values control the Type-I error rate are also wrong.
p-value is the probability of the observed data (or data even more in disagreement with the null hypothesis) assuming the null hypothesis is true. Nothing more. It does not control any risk at all. In other word, p-value = 0.05 means that if H0 was true, you had one chance other 100 to observe the results you had (or results even less likely).
The decision rule « reject H0 if p ≤ alpha » controls the Type I error rate, at alpha. This is very different! Using this decision rule, for alpha = 0.05, a p-value of 0.9999 or of 0.050001 will have exactly the same interpretation, lead to the same conclusion ("do not reject H0"); just like a p-value of 0.04999 and a p-value of 10^-5 ("reject H0"). In other words, when using the decision rule, the exact value of the p-value is meaningless, only its comparison to alpha has a meaning.
Note that this means that you are wrong on your Type I error rate control, but it also means that you are right in not trusting the « p-value is high, so we can conclude that H0 is true », which is definitely wrong.
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After several washings of shale samples in search of microfossils, each time we obtained the same results, a species of foraminifera and radiolarians, we followed the standard method, with water, hydrogen peroxide , soap, vinegar... but in the end it's the same
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Dear Brahim
You mentioned that your already tried 'soap'. If you mean a tenside like Rewoquat, then the only other good option for removing the white stuff in the cavities (besides Frank's suggestion) could be the concentrated acetic acid method (= not vinegar) proposed by Lirer (2000). I assume that this white stuff is not just shale, but too a large extent secondary calcite, in which case Rewoquat will not help. Preservation wise, your Cretaceous assemblage looks quite familiar and in fact fairly clean, but it suffers from recrystallisation and probably calcite infilling.
Please provide feedback later on the effectiveness of the suggestion made by Frank Peeters!
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I am looking for where I can carry out the following instrumentation analyses.
SEM with EDX (5um, 10um and 20um) for powdered samples
SEM with EDX (5um, 10um and 20um) for polished surface samples
XRD (Rietveld Mineralogical analyses) for powdered samples
Any credible suggestions or recommendations?
Thanks
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Sage. Davies Pearl Oluwatosin - Allschoolabs Yes, I made enquiries, and I was told Allschoolabs doesn't have up to 5um, 10um and 20um magnifications for SEM.
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I am facing a weird reversal of two positively related constructs (positively correlated, path positive when no other variables are present in the model) within the full structural model calculation in AMOS:
When inserted into the full structural model and adding directive paths between the constructs, a negative significant path loading appears between the two constructs that correlate (and should correlate!) POSITIVELY. The negative path is oppositve everything that makes sense from a theoretical perspective.
This means, that when other IVs and the measurement models come into play, the relationship that exists is somehow reversed. Obviously, this is an artifact produced by SEM.
It is to mention that some of the 6 IVs we have in our model have VIFs higher than 3, one is even around 7. This means, that multicollinearity between different IVs could be the root of the problem.
Are there other possible explanations, and what are potential fixes?
If anyone has experience with this, or literature to recommend, I would really appreciate it.
Thanks in advance! Charlotte Baar
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Hi Charlotte,
can you show a path diagram with explanation of the variables involved. Strange negative effects ring the "collider bias" bell. Christian Geiser you pointed into the right direction although I found this paper here much more eye-opening:
Kim, Y. (2019). The causal structure of suppressor variables. Journal of Educational and Behavioral Statistics, 1076998619825679. doi:10.3102/1076998619825679
More on collider bias:
Elwert, F., & Winship, C. (2014). Endogenous selection bias: The problem of conditioning on a collider variable. Annual Review of Sociology, 40, 31-53. doi:10.1146/annurev-soc-071913-043455
Best,
Holger
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Hi all,
I've been using a blend of chitosan and PEO (dissolved in aqueous acetic acid) to produce electrospun nanofibers. Whilst I am able to produce bead-free nanofibers, I often see the formation of droplets on the nanofiber mats. Using SEM, you can see areas where the droplets have dissolved the nanofibers. I have tried different polymer concentrations, polymer ratios, solvent concentrations, tip-to-collector distances, voltages and flow rates, but nothing seems to stop the droplets from forming. Is this because of the humidity of the environment, or could other factors be involved? Thanks!
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16 cm is the maximum for the machine I'm using but I'm considering using a different machine with a greater range. Thanks for your help!
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Its about synthesized materials characterizations
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please have a look at the following test facility in Lahore:
Best regards
G.M.
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I took SEM pictures of my clean 0.2um pore size PES membrane filter. The first picture is coated with 5nm gold, and the second is with 20 nm carbon. Both pictures are 2500X magnification, and the scale is 4um. I wonder why the two pictures look significantly different. The picture I coated with gold doesn't look like the pore size is 0.2um.
Thanks,
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Nice SEM photo's!
It looks in the SEM magnification that both SEM magnifications are not the same? The main reason for the different between the two SEM is the fact that the coating thickness is different and the type of coating is different.
I understand that you are coating the filter in order to be able to SEM them as they need to be conductive. Try to use a high power microscope ~ 1000x just to observe how the filter looks. You may learn something.
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I would like to know which is the best for simple moderation analysis with 1 independent variable, 1 dependent variable and 1 moderating variable.
Thank you.
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Deeba Hasan, as far as I remember, people use bootstrapping in PROCESS to deal with the non-normal sampling distribution of the indirect effect in mediation models. I am not sure if that is an issue with moderation, but I cannot recall anyone ever mentioning it.
Instead of asking myself how to justify an existing technique, I would consult the methods literature in order to find out what the best technique is.
Generally speaking, the user-friendliness of PROCESS comes with (at least) three caveats:
1. Less flexibility: There is a limited set of models, and "your" model might not be one of them. SEM, in principle, lets you specify any model.
2. More assumptions: PROCESS is so accessible because it makes more assumptions that might not be true in your data, e.g., zero measurement error. SEM allows you to model those explicitly.
3. Less critical thinking: In my opinion, easily accessible, "ready-to-use" software tends to make people skip the step of critically examining their model and its underlying assumptions. It is much easier to just click a few buttons than to "manually" specify a model in a process (no pun intended) that requires more comprehensive considerations.
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There are many software for analysis but which one is the best?
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For structural equation modeling (SEM), SmartPLS (https://www.smartpls.com) supports both PLS-SEM and CB-SEM (like Amos - you can even import your existing Amos projects).
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We have a Jeol JSM 3690 SEM. The filament burned out and I replaced it and checked the objective aperture for damage. Cleaned everything well and reassembled. No amount of alignment, filament heating/saturation, settings in the software will produce an image. Any suggestions are welcome, just can't afford the absurd amount of $$ necessary to get a Jeol tech out to service it...
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My experience extends only to Philips machines, but I guess it will be similar for other manufacturers. Before finetuning with gun settings on control desk or in software the filament has to be properly aligned in the wehnelt cylinder. So for tungsten this means after filament change: put the gun cap under a stereomicroscope and focus on the wehnelt aperture (center hole). Use the height adjustment to get the filament close to the hole but never let it touch the aperture.
Find the alignment screws and center the filament within the aperture. Now raise the filament and center it again. Repeat this procedure until the filament is flush with the aperture and perfectly in center. Remember that it must not touch the aperture. Then lower the filament 0.15-0.2 mm. Now reinstall the gun cap, close the column, evacuate and check the emission. If you don‘t get a proper emission, you cannot get a picture, no matter what software adjustments you make. I hope that helps, as I had the same process last weekend.
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How do I run a mediation with two independent variables and one dependent variable in PLS SEM? Please suggest some paper as well its interpretation ?
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Thanks for the detailed answer L.Sibanda
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Sample size requirements for Structural Equation Models (SEM)?
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Dr. Christian Geiser,
Thanks.
Will go through the suggested readings.
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I built a model in SEM (only direct paths between 4 predictors and 1 criterion) and then MGCFA for 4 groups of respondents. It performs well. However, I wanted to test if the model works for subgroups (each group can be divided into two subgroups) but they were too small for additional MGCFA (some of them are under 100 cases). I would like to do multiple regression on factor scores obtained from SEM for each subgroup. The problem is, due to the treatment of the measurement error in multiple regression, that I'll get biased results. Is there an alternative or correction for such situation?
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Actually SEM is an advancement of traditional regression. SEM improve the weakness of regression where it cannot model the constructs in the model. I guess you can differentiate between constructs and variables. Now SEM is the solution for the weakness in OLS regression. Then why you want to go backward and take a factor score for each construct and treat the constructs as variables? The result of OLS regression is not as accurate as SEM.
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We need work where the structure of this material is affected, as well as the composition and sem analysis of this material. Thank you!
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I did not use this material before.
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CK, OK, NAK MEANING IN SEM EDAX GRAPH
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Vladimir Dusevich The entire answer is plagiarized…
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Greetings,
I am currently in the process of conducting a Confirmatory Factor Analysis (CFA) on a dataset consisting of 658 observations, using a 4-point Likert scale. As I delve into this analysis, I have encountered an interesting dilemma related to the choice of estimation method.
Upon examining my data, I observed a slight negative kurtosis of approximately -0.0492 and a slight negative skewness of approximately -0.243 (please refer to the attached file for details). Considering these properties, I initially leaned towards utilizing the Diagonally Weighted Least Squares (DWLS) estimation method, as existing literature suggests that it takes into account the non-normal distribution of observed variables and is less sensitive to outliers.
However, to my surprise, when I applied the Unweighted Least Squares (ULS) estimation method, it yielded significantly better fit indices for all three factor solutions I am testing. In fact, it even produced a solution that seemed to align with the feedback provided by the respondents. In contrast, DWLS showed no acceptable fit for this specific solution, leaving me to question whether the assumptions of ULS are being violated.
In my quest for guidance, I came across a paper authored by Forero et al. (2009; DOI: 10.1080/10705510903203573), which suggests that if ULS provides a better fit, it may be a valid choice. However, I remain uncertain about the potential violations of assumptions associated with ULS.
I would greatly appreciate your insights, opinions, and suggestions regarding this predicament, as well as any relevant literature or references that can shed light on the suitability of ULS in this context.
Thank you in advance for your valuable contributions to this discussion.
Best regards, Matyas
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Thank you for your question. I have searched the web for information about the Diagonally Weighted Least Squares (DWLS) and Unweighted Least Squares (ULS) estimators, and I have found some relevant sources that may help you with your decision.
One of the factors that you should consider when choosing between DWLS and ULS is the sample size. According to Forero et al. (2009)1, DWLS tends to perform better than ULS when the sample size is small (less than 200), but ULS tends to perform better than DWLS when the sample size is large (more than 1000). Since your sample size is 658, it falls in the intermediate range, where both methods may provide similar results.
Another factor that you should consider is the degree of non-normality of your data. According to Finney and DiStefano (2006), DWLS is more robust to non-normality than ULS, especially when the data are highly skewed or kurtotic. However, ULS may be more efficient than DWLS when the data are moderately non-normal or close to normal. Since your data have slight negative skewness and kurtosis, it may not be a serious violation of the ULS assumptions.
A third factor that you should consider is the model fit and parameter estimates. According to Forero et al. (2009)1, both methods provide accurate and similar results overall, but ULS tends to provide more accurate and less variable parameter estimates, as well as more precise standard errors and better coverage rates. However, DWLS has higher convergence rates than ULS, which means that it is less likely to encounter numerical problems or estimation errors.
Based on these factors, it seems that both DWLS and ULS are reasonable choices for your data and model, but ULS may have some advantages over DWLS in terms of efficiency and accuracy. However, you should also check the sensitivity of your results to different estimation methods, and compare them with other criteria such as theoretical plausibility, parsimony, and interpretability.
I hope this answer helps you with your analysis. If you need more information, you can refer to the sources that I have cited below.
1: Factor analysis with ordinal indicators: A Monte Carlo study comparing DWLS and ULS estimation by Carlos G. Forero, Alberto Maydeu-Olivares & David Gallardo-Pujol in British Journal of Mathematical and Statistical Psychology (2009)
: Non-normal and categorical data in structural equation modeling by Sara J. Finney & Christine DiStefano in Structural equation modeling: A second course (2006)
Good luck
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I have a longitudinal model and the stability coefficients for one construct change dramatically from the first and second time point (.04) to the second and third time point (.89). I have offered a theoretical explanation for why this occurs, but have been asked about potential model bias.
Why would this indicate model bias? (A link to research would be helpful).
How can I determine whether the model is biased or not? (A link to research would be helpful).
Thanks!
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That makes sense. Are you comparing the cross-lagged panel (auto)regression (path) coefficients to zero-order correlations? This could be part of the issue (explain the "discrepancy"/low autoregressive stability coefficient). Regression coefficients are not equal to zero-order (bivariate) correlations. The regression coefficients take the correlation with other independent variables into account. This may explain why the autoregressive "stability" coefficients in your model look very different from the zero-order correlations. It is impossible to know without looking at your data and model in more detail.
The model fit does not look completely horrible at first sight but the chi-square test is significant and the RMSEA value is a bit high. I would take a look at model residuals and/or modification indices to find out where the model may be misspecified.
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i am very new to experimental physics and could you please suggest me resources to understanding the concepts of UV, FTIR, XRD, SEM, Raman and Judd Ofeld theory and i am struggling with these, are doing ?i also studying separately. if u suggest it ll be very helpful to me.
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It would be nice to know what you have already read and studied.
I will not promote Wikipedia as the authoritative standard on any of the topics you listed, but I would recommend it as a good place to start. You can delve into their references for more details. I noticed that several of the seminal papers on SEM were cited.
I would also look into the web sites of the larger manufacturers. They have the size to dedicate resources to tutorials in their fields. They also have a self-interest. A more informed researcher might better appreciate the equipment they are selling.
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Hello everyone,
Whats up??
So, I was doing some tests with genetic (PCA scores), environmental (PCA scores), past climatic variation (PCA scores), and geographical (latitude and longitude) data using SEM analysis and some weird results came across. The determinantion coeficients (Std.all) were higher than 1.0 (100%) and p values very significant (0.000). I looked for explanations in lavaan package and other SEM documentation and videos but I didn't find nothing.
Did someone here already used SEM and get this kind of problem?
Model created and analysis summary are attached
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To me it looks like there may be suppressor effects in the model portion for genPC1. Are some of the predictor variables for genPC1 strongly correlated with one another?
The Std.all coefficients are standardized regression coefficients (not: coefficients of determination). The coefficients of determination are given under R-Square. The R-square values are all within the appropriate range between 0 and 1; no improper value there. The standardized regression coefficients (Std.all) can be > |1|. This can happen when predictors are strongly correlated and/or when there are suppressor effects in the model.
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I have already collected the data ,during analysis one factor total variance value became greater than 50%. How can I continue?
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Hi,
A total variance over 50% could suggest CMB, but 0.76 isn't a clear-cut sign. You can proceed with PLS-SEM but should also run additional CMB tests.
Hope this helps.
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Dear All,
I want to study advanced research methods(beyond descriptive and inferential analysis such as factorial analysis EFA, CFA, SEM,and regressions, etc.) for conducting research in languages or linguistics. Please suggest some books on how to use correct tests accurately. Regards, Saleem
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Applied Multivariate Statistical Analysis" by Richard A. Johnson and Dean W. Wichern
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Can anyone share the tissue processing protocol for SEM/TEM of tissue slides of mice?
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Thankyou so much
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I want to determine the elements of the pyroxene and plagioclase minerals so that I can measure the change in composition and temperature-pressure? Is SEM analysis suitable for this study?Thank you
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Thanks for the answer.
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Since this question has been asked but not in quite a few years, and software changes frequently - what alternative do people recommend to AMOS for SEM? I'm a doctoral student who will be using SEM for my dissertation. Many thanks!
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Thank you, Aberkane. Do you have a preference among these?
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I use different types of CL to characterize minerals and materials, like CL color imaging on a light microscope or hyperspectral CL on SEM/EPMA.
Is there any solution to convert a CL spectrum (wavelength vs intensity) to coordinates in a RGB color space to determine the perceived color, in order to be able to correlate and analyze the information coming from the different modes of observation ?
Thank you for your help
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Dear Thomas,
According to the user guide, this tool looks to be what I need.
Unfortunately, the download link is broken.
Thanks for your help.
Guillaume
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I want to prepare a termite sample for SEM observation and i know it is dehydrated with a graded series of ethanol. but my sample has already been fixed in 75% ethanol for more than one month. So how to treat these samples to prepare for Scanning electron microscope? kindly suggest.
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Depends on the objective. Probably dehydrating into pure Ethanol and then either critical point or HMDS drying. Mount, sputter, enjoy!
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I am using photoshop for the same. Please suggest some good software for labelling SEM images like crater, holes etc
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Dear Manu Khare ,
Positions 1 through 8 are paid platforms, while 9 through 13 are free image annotation tools.
Regards,
Shafagat
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Can you suggest some covariance based SEM software to analyse formative constructs? I used to use AMOS. But suggestions I got is that, AMOS is not built to deal with formative constructs. What do you think? Do you have any other suggestions? Thank you very much.
Regards, Catherine.
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It depends on your undertstanding about a formative construct. If you regard it as a latent variable, you can model a causal-formative measurement model, see e.g., Bollen & Bauldray (2011). CB-SEM is eminently suitable for that. If you regard a formative construct as a composite that is composed of other variables, you can employ the Henseler-Ogasawara specification which allows for flexibly modeling composites in CB-SEM, see e.g., Schuberth (2021), Yu et al. (2023).
HTH
Best regards,
Florian
References:
K. A. Bollen and S. Bauldry, “Three Cs in measurement models: Causal indicators, composite indicators, and covariates,” Psychological Methods, vol. 16, no. 3, pp. 265–284, 2011, doi: 10.1037/a0024448.
F. Schuberth, “The Henseler-Ogasawara specification of composites in structural equation modeling: A tutorial,” Psychological Methods, 2021, doi: 10.1037/met0000432.
X. Yu, F. Schuberth, and J. Henseler, “Specifying composites in structural equation modeling: A refinement of the Henseler-Ogasawara specification,” Statistical Analysis and Data Mining, vol. 16, no. 4, pp. 348–357, 2023, doi: 10.1002/sam.11608.
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I have a query about the SEM images; when I analyzed them, they showed some cracks; I stuck to why it can be shown this, what is the reason behind it, and what is the chemistry behind it. I request everyone, please give me an answer as soon as possible; thank you for your attention.
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Your response 'Powders were placed onto the SEM stub after ensuring the samples were thoroughly dried' is confusing. I'm trying to figure out whether your difficulties lie in the starting material (is it a suspension or powder?) itself or the sample preparation for SEM. As others have indicated a drying stage (either prior to or during the evacuation stage in SEM) is likely be responsible. I agree with Vladimir Dusevich that 'Cracks are the least of your problems'. If you had a genuine 'nano' system (100% < 100 nm) and prepared the sample correctly then you should be able to observe separate, discrete, independent particles < 100 nm. At the least you would be showing an aggregation of such particles if this aggregation occurred in the sample preparation stage.
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How to analyze higher order models in Structural Equation Modeling?
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Use Python or Matlab. Currently I am running a large scale model in python. Happy to collaborate.
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In my hypothesis driven SEM, I have in total 28 variables and 58 edges. Considering such amount, do you suggest me to report adjusted p-values with FDR for example or raw p-values?
Thank you in advance.
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When dealing with a large number of statistical tests, as in your hypothesis-driven structural equation model (SEM) with 28 variables and 58 edges, it's important to consider the issue of multiple testing and how to control for the increased risk of false positives. Reporting adjusted p-values, such as those corrected using the False Discovery Rate (FDR), is generally a recommended approach in such situations.
Here are some reasons why reporting adjusted p-values, specifically using FDR correction, is beneficial:
  1. Control for Multiple Testing: With a large number of tests, the chance of obtaining statistically significant results by random chance increases. FDR correction helps control the overall rate of false positives while still allowing for some discoveries.
  2. Enhanced Reliability: Reporting adjusted p-values helps ensure that the results you present are more reliable and have a lower likelihood of being spurious.
  3. Transparency: Reporting adjusted p-values demonstrates your awareness of the multiple testing issue and your commitment to providing more accurate and trustworthy results.
  4. Comparison Across Studies: Reporting adjusted p-values makes it easier to compare your findings with other studies that might have used similar correction methods.
  5. Publication Standards: Many journals and research communities encourage or require the use of multiple testing corrections in reporting results, especially when dealing with a large number of tests.
Here's how you could proceed:
  1. Conduct your SEM analysis and obtain the raw p-values for your hypotheses.
  2. Apply the FDR correction (e.g., Benjamini-Hochberg procedure) to your raw p-values to obtain adjusted p-values.
  3. Report both the raw and adjusted p-values in your results section.
  4. Indicate which p-values are adjusted and which are not.
By reporting both raw and adjusted p-values, you provide readers with a complete picture of your findings while acknowledging the potential influence of multiple testing.
Remember that while FDR is a widely used correction method, there are other methods as well, such as the Bonferroni correction. The choice of correction method might depend on the specific context of your research and the level of stringency you require.
Ultimately, the goal is to strike a balance between controlling for false positives and not missing potentially important findings. Consulting with a statistician or a domain expert can help ensure that you choose an appropriate approach for adjusting p-values in your SEM analysis
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The Circular dichroism shows negative ellipticity but on visualizing in SEM and TEM it is not possible to see the twist of fibrils during the self-assembly
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The antipodes of twisted fibrils cannot be determined using TEM and CEM. You will not distinguish between the left and right hands with your eyes if their morphology from above and below is the same. Also, you can't tell which antipode you see if you don't see another side by side. Alpha and beta glucose will look like white crystals under the microscope.
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X -> Y: X negatively affecting Y.
Y -> Z: Y negatively affecting Z.
X-> Z: X positively effecting Z
Y as a mediator.
I have completed collecting data and upload to PLS-SEM. During analysis all the value of path coefficients became positive. Do I continue to the step or not?
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X may effect Z in a positive or negative way as it appears to be the direct effect in your mediating model. The more relevant question is whether the effect of X on Z is significant with the mediator present. If it is insignificant then the sign is irrelevant as it overlaps with zero. This is the case of complete or full mediation as opposed to partial mediation, the latter occuring when the direct effect remains significant (and assuming your indirect is significant in both cases). Hope that helps provide some assistance.
You may also consider relabeling your terms by using M for your mediator instead of Y and instead use the label Y for your DV instead of Z. Further, in some disciplines Z is reserved for moderating variables such as covariates, control variables such as demographics like age. Obviously every discipline has different conventions for such labels so do check what the usual X, Y,Z,M may be reserved for in your own area perhaps by looking over some published works where mediation has been considered.
Regards Paul
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about type of josephson junction is called step edge ,considering that the created step edge is in micro-nanometer scale, how can you determine the area to be measured in AFM analysis ؟How to determine the border of the covered area from the etched area under the microscope (AFM or SEM)?
Is there a need to mark the back of the sample?
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Dear Dr Professor Zaeinab Torabi
In Josephson junctions, a step edge refers to a type of junction where the superconducting material abruptly changes its height or thickness, creating a boundary where the properties of the material change. These step edges can have interesting quantum effects due to the proximity effect of the superconducting state.
When conducting Atomic Force Microscopy (AFM) analysis, especially in the micro-nanometer scale, determining the area to be measured can be crucial for accurate and meaningful results. AFM is a high-resolution imaging technique that uses a sharp tip to scan a sample's surface and create a topographic map. Here's how you could determine the area to be measured in AFM analysis:
  1. Sample Preparation: Ensure that your Josephson junction sample is properly prepared and mounted on the AFM stage.
  2. Initial Observation: Start with a larger scan area to get an overview of the sample surface. This can help you identify the step edges and determine the general layout of the area you're interested in analyzing.
  3. Zooming In: Once you've identified the step edge or the area of interest, you can zoom in on that region by adjusting the scan size and positioning the AFM tip accurately.
  4. Setting Scan Parameters: Configure the AFM settings, such as scan speed, scan rate, and tip force, depending on your sample's characteristics. These parameters can affect the quality of the image and the accuracy of the measurements.
  5. Scanning: Start the AFM scan, allowing the tip to move over the surface and collect height data. This will help you create a topographic map of the area.
  6. Analyzing Data: After the scan is complete, you'll have a height map that shows variations in the sample's surface. You can use the software provided by the AFM manufacturer to analyze the data, including measuring step heights, determining the extent of the step edge, and quantifying the changes in height across the junction.
  7. Defining Measurement Area: To determine the area to be measured precisely, you can draw a region of interest (ROI) on the height map using the AFM software. This ROI can be around the step edge or any other specific features you want to analyze.
When it comes to distinguishing the border of the covered area from the etched area, you might follow these steps:
  1. Visual Inspection: Start by using a lower magnification setting on the AFM or SEM to identify the boundaries between the etched area and the covered area. This can provide you with a general idea of the transitions.
  2. Topographic Imaging: Perform a high-resolution topographic scan using the AFM or SEM. The variations in height caused by the etched area will be evident in the resulting images.
  3. Height Profile Analysis: Extract height profiles across the boundary of interest. This will help you identify the point at which the height changes abruptly from the etched area to the covered area.
  4. Quantitative Measurement: Use the AFM or SEM software to measure the step height at the boundary. This step height corresponds to the difference in height between the etched area and the covered area.
  5. Overlay with Microscope Images: If you're using SEM, you can also overlay the SEM images with the topographic data from AFM to better visualize the relationship between the etched and covered areas.
Remember that achieving accurate measurements and distinguishing the boundaries precisely might require multiple scans, careful adjustments of parameters, and thorough data analysis. It's also recommended to consult with experts in AFM and SEM techniques, as well as your specific sample material, to ensure the best results
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I would appreciate it if you could share useful articles.
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Hi Yuto,
Please check the following like :
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I am trying to apply SEM for my research.
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Hello Anton,
Yes, latent variables may be used as IVs.
Good luck with your work.
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In two structural equation models, I am comparing the association of two different psychopathological measures with emotion regulation. Emotion regulation is a latent variable with a 4 manifest variables that construct it (lets call them A, B, C, D), which are the same in both models. In model 1, A and C have positive signs while B and D have negative signs. In model 2, B and D have positive signs while A and C are negative. I would like this to be consistent in both models, as currently model 1 reflects "efficiency of emotion regulation" and model 2 reflects "inefficiency of emotion regulation". This will surely confuse reviewers and readers...
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You could try assigning user-defined starting values to the factor loadings that have the desired sign. In the lavaan package, this is done as described on the website below:
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Hello,
I want to compose two latent variable-model.
One latent variable is "socioeconomic factors" in a study. Possible indicators are "life expectancy at birth", "number of doctors per capita" etc. which are obtained from Worldbank database.
The point is I plan to use secondary data. I want to know that if it is required to mind reliability and validity?
Thnx for your help in advance,
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The distinctive feature of your data is not that it is secondary but that is aggregate and about countries not individuals. you therefore need to be careful about the ecological fallacy and not to infer to individuals but stick to countries.
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Calculating Total Effects Accurately in SEM
Today, 07:02
I would like to make sure that I correctly calculate total effects as well as direct and indirect effects from a path analysis model. I would be grateful if you could help me go in the right direction. The path analysis model I work with is shown below. If it weren’t for the variable SocialMarketEconomy, the total effects running from PovertyRates to GDPgrowth are: a*b + d*e + c. --> (1) What I am not confident about is the total effects running from SocialMarketEconomy to GDPgrowth via PovertyRates. Is it the following?: i*b + f*e + g + h*a*b + h*c + h*d*e --> (2) The first thing I would like to make sure is that I correctly understand the paths from SocialMarketEconomy to GDPgrow. Second, am I correct to think that in the presence of the effects (paths) from SocialMarketEconomy, the first total as well as indirect effects I write up (1) are not correct? I would like to understand this, so any help would be welcome. Thank you in advance for your kind help. Best, Taka
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Thank you, David. You've helped me tremendously.
Many thanks again.
Taka
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What methods can be used for the shape and morphology of copper nanoparticles.
Which SEM, DLS, FTIR, and XRD techniques do you recommend?
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If the SEM has sufficient resolution to show individual particles it will certainly be the most direct technique to learn something about the size, the size distribution, the shape and the shape distribution.
With powder xray diffraction it is a bit more indirect to learn something about the shapes. An atomistic model of the nanoparticles can be used to calculate the powder diffraction pattern via the Debye-Scattering-Equation. This usually gives a good estimate of the size and size distribution, the shape is less accurate, as slightly different shapes will give a similar diffraction pattern.
Keep in mind that the "size" of nanoparticles is a function of technique.
Dynamic light scattering gives an approximate size of the entire particle.
Likewise SEM will show the effective overall size of particles.
Diffraction on the other hand gives you the size of the crystallites. If several crystallites conglomerate to larger particles the sizes determined by DLR, SEM, small angle scattering etc will be quite different from the size determined by diffraction techniques.
And importantly, forget the Scherrer equation! It gives you a very crude estimate of the order of magnitude of crystallite sizes, nothing reliable.
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required comment.
They raise the problem of "weak link", but is it possible to improve inter-grain weak links by Ag nano-particles addition. In the referee's understanding, the direction of all the crystalline grains is not oriented in the samples, and no measurements have been made to assess them, so it is impossible to argue for weak link improved.
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Yes, I think it is possible to examine the weak link effect by SEM images of the samples without measurement of crystalline grains. The weak link effect is a phenomenon that occurs in materials with multiple crystalline grains.
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I am using SEM for my studies. My questionnaire involve several adapted questionnaire and one newly established questionnaire. I am sure to run EFA after Pilot study. Do I still run CFA using SPSS or is it already within the SMART PLS I will utilise later?
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Hi Gira,
the most important thing ist to consider whethe a factor model (which the CFA applies) is at least theoretically plausible. "Scales" are often heterogeneous sets of measures that "tap" the "domain" of a (multidimensional) construct (note my marks), not reflective indicators of ONE and the same underyling dimensions/latent variable.
In this thread, you will find more:
In addition, as you started with some conceptional ideas, I would skip the EFA and go direct to CFA (if this is reasonable).
Best,
Holger
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I filtered sodium dodecyl sulfate in buffer solutions through a PES membrane. After that, I took some SEM images of my sample to visualize organic particles fouling on membrane. Here is one of my SEM image. I'm not sure if that looks like organic fouling. need some help. Thanks,
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Dear Makayla,
I am not sure if you can quantify the amount of fouling based on FTIR alone. But let's discuss your issue a bit and hope I get your point. for any analytical analysis, we need a calibration standard. Let's assume you have a known feed solution concentration and you are using cross-flow flow filtration, after you stop the filtration, the concentration of your concentrate and permeate can be determined, so assuming the rest caused fouling. Remember that the volume of your initial feed, and permeate and concentrate are important to verify the mass balance. At this point, you can assume that the fouling occuoccurredcross-flowred evenly and calculate the amount of foulant per area of the membrane.
Another method is also, to cut 3 pieces (known area) of the fouled membrane, and then put that in 3 separate glass tubes (triplicate) and add a known amount of solvent that can dissolve your foulant. Afterwards, use an analytical instrument that can determine the concentration of your foulant which you can easily convert to gr based on the known added volume to the tube. Calculate the average and divide per area.
Last but not least, you can start with different known concentrations of sodium dodecyl sulfate in buffer solutions and do the same procedure that I explained and further also use FTIR and connect the concentration to the intensity or area under specific peaks if the peak is specific to your foulant and not the membrane. Now you can have a calibration curve that connects the ftir and concentration of foulant per area of the membrane. Just remember the time of filtration and pressure, temperature, flow velocity, (turbulent flow), pH and other important factors should be constant.
In the case of real-time monitoring of fouling using Raman spectroscopy, you can read the article of my colleague and maybe get some hints.
In one of my papers, I was also trying to identify the amount of vanillin adsorbed on the membrane surface after my experiment and I explained the methods there, which is similar to what I have learned from my colleague in the abovementioned article.
Hope my explanation is clear and I got your point correctly.
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I have generated a peristimulus time histogram from some neuronal electrophysiology data and I am trying to compare the AUCs for several data. When performing AUC, GraphPad does not generate SEM or SD values. I have seen several tutorials on YouTube where they are automatically calculated.
Thank you for your assistance.
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Hi,
Here's a was to calculating SD and SEM for AUC values in Prism:
  1. Perform AUC analysis for each peristimulus time histogram individually.
  2. Enter the AUC values from each analysis into a new table.
  3. Use the "Descriptive Statistics" analysis under the "Analyze" tab to calculate SD and SEM.
Hope this helps.
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Hi all,
I would really appreciate if someone can guide me how to obtain the factor score of dependent variable in JASP SEM analysis results.
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Hello Jyun-Kai,
I believe that JASP uses the R library, lavaan, for SEM models.
Here's a link which describes both the method lavaan uses and how to elicit factor scores:
Good luck with your work.
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I am currently working with a scanning electron microscope (SEM) for my research, and I am interested in understanding the significance of depth of field in SEM imaging. From what I have learned, the depth of field in SEM can affect the clarity of images, especially when dealing with thicker or three-dimensional specimens. Can anyone share their experiences or insights on how the depth of field impacts SEM imaging and how it compares to optical microscopy? Are there any specific strategies or techniques that can be used to optimize depth of field in SEM? I would greatly appreciate any advice or suggestions from fellow researchers who have worked with SEM and encountered similar challenges. Thank you in advance for your input!
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Greater depth of field helps to keep in focus different areas (of different height) of field of view simultaneously. Another name of depth of field is depth of focus. You can increase it by increasing working distance (with some loss of resolution) or by installing a smaller aperture of final lens (with some improvement of resolution by also increasing noise).
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How to prepare yeast sample for SEM
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I had worked with yeast (in colonies) just once, so not a lot of experience, but you have no other recommendations yet...
Use standard protocol for cell/bacteria colonies, but increase time for each step significantly, to at least 1 hour. First washes in pure alcohol and in pure resin keep overnight. May be it's an overkill, but it worked for me.
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Currently, I am trying to determine the fiber diameter in ImageJ using DiameterJ Plugin. Although I created segmented images using the diameterJ plugin, after analysis DiameterJ does not generate an excel file containing radius calculations. I attempted multiple methods, including downloading the software from multiple locations. It still contains errors. Therefore, it would be helpful if anyone who has effectively utilized the diameterJ plugin in ImageJ could share that software. Or any recommendations?
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Hello I encountered the same issue with DiameterJ plugin. However I was able to find a alternative plugin to measure the fiber diameter. Here is a step by step video tutorial. it uses the GIFT plugin in imageJ. Hope you find this useful https://www.youtube.com/watch?v=GjQ3V7uH-Dc