JoEllen Weaver's research while affiliated with University of Pennsylvania and other places

Publications (23)

Article
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Background Glaucoma is a leading cause of worldwide irreversible blindness. Considerable uncertainty remains regarding the association between a variety of phenotypes and the genetic risk of glaucoma, as well as the impact they exert on the glaucoma development. Methods We investigated the associations of genetic liability for primary open angle g...
Article
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The objective of this study is to define CT imaging derived phenotypes for patients with hepatic steatosis, a common metabolic liver condition, and determine its association with patient data from a medical biobank. There is a need to further characterize hepatic steatosis in lean patients, as its epidemiology may differ from that in overweight pat...
Article
Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) infection of vaccinated individuals is increasingly common but rarely results in severe disease, likely due to the enhanced potency and accelerated kinetics of memory immune responses. However, there have been few opportunities to rigorously study early recall responses during human viral...
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Though diet quality is widely recognized as linked to risk of chronic disease, health systems have been challenged to find a user-friendly, efficient way to obtain information about diet. The Penn Healthy Diet (PHD) survey was designed to fill this void. The purposes of this pilot project were to assess the patient experience with the PHD, to valid...
Preprint
Full-text available
SARS-CoV-2 infection of vaccinated individuals is increasingly common but rarely results in severe disease, likely due to the enhanced potency and accelerated kinetics of memory immune responses. However, there have been few opportunities to rigorously study early recall responses during human viral infection. To better understand human immune memo...
Article
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The Penn Medicine BioBank (PMBB) is an electronic health record (EHR)-linked biobank at the University of Pennsylvania (Penn Medicine). A large variety of health-related information, ranging from diagnosis codes to laboratory measurements, imaging data and lifestyle information, is integrated with genomic and biomarker data in the PMBB to facilitat...
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It is important to determine if severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) infections and SARS-CoV-2 mRNA vaccinations elicit different types of antibodies. Here, we characterize the magnitude and specificity of SARS-CoV-2 spike-reactive antibodies from 10 acutely infected health care workers with no prior SARS-CoV-2 exposure hist...
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Although several therapeutics are used to treat COVID-19 patients, there is still no definitive metabolic marker to evaluate disease severity and recovery or a quantitative test to end quarantine. Because SARS-CoV-2 infects human cells via the ACE2 receptor and COVID-19 is associated with Renin-Angiotensin-system dysregulation, we evaluated soluble...
Preprint
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Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) mRNA vaccines elicit higher levels of antibodies compared to natural SARS-CoV-2 infections in most individuals; however, the specificities of antibodies elicited by vaccination versus infection remain incompletely understood. Here, we characterized the magnitude and specificity of SARS-Co...
Article
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Background Identification of germline mutations in DNA repair genes has significant implications for the personalized treatment of individuals with prostate cancer (PrCa). Objective To determine DNA repair genes associated with localized PrCa in a diverse academic biobank and to determine genetic testing burden. Design, setting, and participants...
Article
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Some studies suggest that recent common coronavirus (CCV) infections are associated with reduced COVID-19 severity upon SARS-CoV-2 infection. We completed serological assays using samples collected from health care workers to identify antibody types associated with SARS-CoV-2 protection and COVID-19 symptom duration. Rare SARS-CoV-2 cross-reactive...
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PURPOSE Multiple studies have demonstrated the negative impact of cancer care delays during the COVID-19 pandemic, and transmission mitigation techniques are imperative for continued cancer care delivery. We aimed to gauge the effectiveness of these measures at the University of Pennsylvania. METHODS We conducted a longitudinal study of SARS-CoV-2...
Preprint
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Recent common coronavirus (CCV) infections are associated with reduced COVID-19 severity upon SARS-CoV-2 infection, however the immunological mechanisms involved are unknown. We completed serological assays using samples collected from health care workers to identify antibody types associated with SARS-CoV-2 protection and COVID-19 severity. Rare S...
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Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) has rapidly spread within the human population. Although SARS-CoV-2 is a novel coronavirus, most humans had been previously exposed to other antigenically distinct common seasonal human coronaviruses (hCoVs) before the COVID-19 pandemic. Here, we quantified levels of SARS-CoV-2-reactive a...
Preprint
Full-text available
Multiple studies have demonstrated the negative impact of cancer care delays during the COVID-19 pandemic, and transmission mitigation techniques are imperative for continued cancer care delivery. To gauge the effectiveness of these measures at the University of Pennsylvania, we conducted a longitudinal study of SARS-CoV-2 antibody seropositivity a...
Article
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The clinical impact of rare loss-of-function variants has yet to be determined for most genes. Integration of DNA sequencing data with electronic health records (EHRs) could enhance our understanding of the contribution of rare genetic variation to human disease¹. By leveraging 10,900 whole-exome sequences linked to EHR data in the Penn Medicine Bi...
Preprint
Full-text available
Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) has rapidly spread within the human population. Although SARS-CoV-2 is a novel coronavirus, most humans had been previously exposed to other antigenically distinct common seasonal human coronaviruses (hCoVs) before the COVID-19 pandemic. Here, we quantified levels of SARS-CoV-2-reactive a...
Article
Full-text available
Limited data are available for pregnant women affected by SARS-CoV-2. Serological tests are critically important for determining SARS-CoV-2 exposures within both individuals and populations. We validated a SARS-CoV-2 spike receptor binding domain serological test using 834 pre-pandemic samples and 31 samples from COVID-19 recovered donors. We then...
Preprint
Full-text available
Limited data are available for pregnant women affected by SARS-CoV-2. Serological tests are critically important to determine exposure and immunity to SARS-CoV-2 within both individuals and populations. We completed SARS-CoV-2 serological testing of 1,293 parturient women at two centers in Philadelphia from April 4 to June 3, 2020. We tested 834 pr...
Article
1576 Background: Approximately 5% of localized PCa and 12% of metastatic PCa are associated with germline mutations in DNA repair genes. The National Comprehensive Cancer Network (NCCN) issued genetic testing guidelines to identify PCa patients (pts) likely to harbor a germline DNA repair mutation. The overall burden of this guideline-based, resour...
Preprint
Full-text available
SARS-CoV-2 has led to a pandemic of respiratory and multisystem disease, named COVID-19.1 Limited data are available for pregnant women affected by COVID-19.2 Serological tests, particularly those that provide quantitative information, are critically important to determine exposure and immunity to SARS-CoV-2 within both individuals and populations....

Citations

... Furthermore, we found T cell levels to be the single most predictive factor. Notably, it is the anamnestic T cell response that is the earliest during a breakthrough infection 30 . Moreover, the nAbs produced after booster vaccination are well below those in children with VVI(S) hybrid immunity, which is the only group with antibody titers above the threshold associated with protection from symptomatic infection. ...
... As specifically concerns the former aspect, despite the very low number of subjects included in this pilot study, we showed that the SARS-CoV-2 IFN-γ response is characterized by a very short lag time of around 1-2 days, and gradually increases up to 4-5 days after administration, after which period begins to decline and stabilizes at around 2-3 folds higher values compared to baseline. These results are basically aligned with those preliminarily presented by Painter et al. [7], who showed that spike-specific CD4+ and CD8+ T cells could be robustly activated by SARS-CoV-2 infection early during the first week, with activation seen between 3 and 5 days from symptom onset in most individuals, then peaking at around day 7. Moreover, our findings also provide preliminary biologic evidence to support the clinical observation that COVID-19 vaccines administered within a few days after SARS-CoV-2 exposure may be effective in halving the risk of developing severe COVID-19 illness [8], whereby we showed that vaccine efficacy in boosting T cell response begins to manifest very early (i.e., within few days) after administration. ...
... The UKB is composed of >500,000 participating individuals aged 37-73 years at the time of recruitment, who underwent various questionnaires, physical measurements, biological sampling (blood and urine), and genome sequencing across 22 assessment centers in the UK 30 . A subset of participants were invited to complete an additional examination that included magnetic resonance imaging of the heart 10 .The PMBB is composed of 174,712 consenting patients of the Penn Medicine health network, with a subset of 44,000 participants with available genotyping data 11 . Additionally, all participants medical records including imaging results are de-identified and linked to their identifier. ...
... Previous studies have reported, that HCoV-induced memory B cell responses might inhibit the response to novel SARS-CoV-2 antigens or epitopes after vaccination or infection (45,46). To test for this so-called imprinting or original antigenic sin effect, we correlated the pre-existing antibody-and Bmem levels against HCoV S1 with the magnitude of the vaccination-induced antibody response to SARS-CoV-2 antigens. ...
... This correlation of ACE2 antibodies with disease severity is consistent with previous studies, but this is the first study demonstrating increased ACE2 antibody levels in IgG, IgA, and IgM based on disease severity 11,13,15,16 . Indeed, SARS-CoV-2 infection has been associated with increased ACE2 shedding from cell membranes, but there are conflicting studies on the impact of soluble ACE2 on enzymatic function 11,[36][37][38] . Apart from its role as the SAR-CoV-2 receptor, membranebound ACE2 typically regulates blood pressure, wound healing, and inflammation via the renin-angiotensin system [6][7][8] . ...
... Genomic instability is one of the hallmarks of cancer and is commonly caused by defective DNA damage repair pathways, including mutations in homologous recombination repair (HRR) genes such as BReast CAncer gene 1/gene 2 (BRCA1/2) [5]. The prevalence of germline and somatic HRR mutations reaches 12% and 20-25%, respectively, in patients with metastatic castration-resistant prostate cancer (mCRPC) [6], exceeding their frequency in localized PCa of 3.5% and 8%, respectively [7,8]. The most frequently mutated HRR gene in mCRPC is BRCA2 (44%), followed by ATM, CHEK2, and BRCA1, which account for 13%, 12%, and 7% of HRR mutations in patients with mCRPC, respectively [9]. ...
... Several studies have observed immunomodulation caused by HCoV antibodies on SARS-CoV-2: As an example, a strong back-boosting effect was reported to conserved but not variable regions of the HCoV-OC43 and HCoV-HKU1 betacoronaviruses spike protein in hospitalized COVID-19 patients [85]. However, it remains largely unclear in which ways circulating HCoV antibodies affect the SARS-CoV-2 immune response [85][86][87]. Several other studies have indicated that B cell [88] and T-cell responses mounted against a lifetime of exposures to HCoVs can cross-react with SARS-CoV-2 [70,89], yet there is no known cross-protective effect for B cells [85,90] and the protective role of the Tcell response remains unclear. ...
... Specifically, cross-reactive CD4 + T cells have been associated with enhanced immune responses against SARS-CoV-2 infection and vaccination 36,37 and the development of severe COVID-19 38 . In contrast, pre-existing cross-reactive CD8 + T cells have been associated with asymptomatic SARS-CoV-2 infection 39 and reduced COVID-19 severity and shorter disease duration [40][41][42] . There is precedent for pre-existing immunity leading to disparate effects on disease outcomes. ...
... Among studies that have been reported to date for patients with solid tumors, patients with genitourinary cancers constituted only 8%-17% of the sample assessed. [11][12][13]29 In the current study of primarily patients with prostate and RCC, the treatments rendered were representative of the respective disease types-patients with prostate cancer most frequently received endocrine therapy, while patients with RCC most frequently received either targeted therapy or immunotherapy. Prostate cancer has been purported to have a complex interplay with SARS-CoV-2, with expression of the angiotensin-converting enzyme (ACE-2) receptor in prostate epithelial cells. ...
... Previous exposure to such 'older' coronaviruses most likely fosters some level of cross immunity against SARS-CoV-2 and its different variants. 45,46 Fourth, a previous infection with SARS-CoV-2 creates a certain degree of immunity against reinfection. This immunity can result both from symptomatic as well as from asymptomatic infections, the latter possibly characterised by a higher degree of immunity, notably because the virus is polyclonal and not limited to the highly mutating spike protein, and because it fosters stronger mucosal and T-cell responses. ...